PDB: 224004 resultsInfo pagesStatus searchChemie searchBIRD

---

8WUS	SpCas9-MMLV RT-pegRNA-target DNA complex (termination) Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (40-MER), DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), ... Authors: Shuto, Y, Nakagawa, R, Hoki, M, Omura, S.N, Hirano, H, Itoh, Y, Nureki, O. Deposit date: 2023-10-21 Release date: 2024-06-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis for pegRNA-guided reverse transcription by a prime editor. Nature, 631, 2024
7NKG	Methyl-coenzyme M reductase from Methermicoccus shengliensis at 1.6-A resolution Descriptor: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ... Authors: Mueller, M, Wagner, T. Deposit date: 2021-02-18 Release date: 2021-05-19 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural Insights into the Methane-Generating Enzyme from a Methoxydotrophic Methanogen Reveal a Restrained Gallery of Post-Translational Modifications. Microorganisms, 9, 2021
8WUU	SpCas9-pegRNA-target DNA complex (pre-initiation) Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (34-MER), DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), ... Authors: Shuto, Y, Nakagawa, R, Hoki, M, Omura, S.N, Hirano, H, Itoh, Y, Nureki, O. Deposit date: 2023-10-21 Release date: 2024-06-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for pegRNA-guided reverse transcription by a prime editor. Nature, 631, 2024
8WI2	RD-hMRP5-inward open Descriptor: ATP-binding cassette sub-family C member 5, CYS-GLN-ASP-ALA-LEU-GLU-THR-ALA-ALA-ARG-ALA-GLU-GLY-LEU-SER-LEU-ASP-ALA-SER Authors: Liu, Z.M, Huang, Y. Deposit date: 2023-09-24 Release date: 2024-07-03 Method: ELECTRON MICROSCOPY (4.06 Å) Cite: Inhibition and transport mechanisms of the ABC transporter hMRP5. Nat Commun, 15, 2024
8XRT	The crystal structure of a GH3 enzyme CcBgl3B Descriptor: CALCIUM ION, GH3 enzyme CcBgl3B Authors: Su, J.Y. Deposit date: 2024-01-08 Release date: 2024-04-10 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A trapped covalent intermediate as a key catalytic element in the hydrolysis of a GH3 beta-glucosidase: An X-ray crystallographic and biochemical study. Int.J.Biol.Macromol., 265, 2024
8X5D	The cryo-EM structure of the Mycobacterium tuberculosis CRISPR-Csm complex Descriptor: CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm5, Csm2, ... Authors: Liu, M.X, Li, Z.K. Deposit date: 2023-11-17 Release date: 2024-03-06 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Type-III-A structure of mycobacteria CRISPR-Csm complexes involving atypical crRNAs. Int.J.Biol.Macromol., 260, 2024
9FZD	Structure of OmpA-long in complex with nanobody Nb39 Descriptor: Nanobody 39, Outer membrane protein A Authors: Ackle, F, Sorgenfrei, M, Seeger, M.A. Deposit date: 2024-07-05 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Rapid detection and capture of clinical Escherichia coli strains mediated by OmpA-targeting nanobodies To Be Published
8Z9Q	Cryo-EM structure of Thogoto virus polymerase in a replication reception conformation Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-D(*(ATP))-R(P*GP*CP*AP*AP*AP*AP*AP*CP*A)-3'), ... Authors: Xue, L, Chang, T, Li, Z, Zhao, H, Li, M, He, J, Chen, X, Xiong, X. Deposit date: 2024-04-23 Release date: 2024-05-29 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.33 Å) Cite: Cryo-EM structures of Thogoto virus polymerase reveal unique RNA transcription and replication mechanisms among orthomyxoviruses. Nat Commun, 15, 2024
8Z9R	Cryo-EM structure of Thogoto virus polymerase in a replication elongation-reception conformation Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-D(*(ATP))-R(P*GP*CP*AP*AP*AP*AP*AP*CP*A)-3'), ... Authors: Xue, L, Chang, T, Li, Z, Zhao, H, Li, M, He, J, Chen, X, Xiong, X. Deposit date: 2024-04-23 Release date: 2024-05-29 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Cryo-EM structures of Thogoto virus polymerase reveal unique RNA transcription and replication mechanisms among orthomyxoviruses. Nat Commun, 15, 2024
8YTO	Single-chain Fv antibody of E11 complex with NP-glycine Descriptor: 2-[2-(3-nitro-4-oxidanyl-phenyl)ethanoylamino]ethanoic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ... Authors: Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M. Deposit date: 2024-03-26 Release date: 2024-07-03 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.04 Å) Cite: Affinity-matured antibody with a disulfide bond in H-CDR3 loop. Arch.Biochem.Biophys., 758, 2024
8XP9	Crystal structure of d(ACGCCGT/ACGGCGT) Descriptor: DNA (5'-D(P*AP*CP*GP*CP*CP*GP*T)-3'), DNA (5'-D(P*AP*CP*GP*GP*CP*GP*T)-3') Authors: Hou, M.H, Lin, S.M, Lin, Y.J, Neidle, S. Deposit date: 2024-01-03 Release date: 2024-05-29 Last modified: 2024-08-14 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Structural basis of water-mediated cis Watson-Crick/Hoogsteen base-pair formation in non-CpG methylation. Nucleic Acids Res., 2024
8WUV	SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt) Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), DNA (50-MER), ... Authors: Shuto, Y, Nakagawa, R, Hoki, M, Omura, S.N, Hirano, H, Itoh, Y, Nureki, O. Deposit date: 2023-10-21 Release date: 2024-06-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis for pegRNA-guided reverse transcription by a prime editor. Nature, 631, 2024
9CK0	Cocrystal of PPARg LBD and NFKBIB / IKBB peptide with agonist GW1929 Descriptor: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, NF-kappa-B inhibitor beta, Peroxisome proliferator-activated receptor gamma Authors: Nemetchek, M.D, McClelland, L.J, Hughes, T.S. Deposit date: 2024-07-08 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Cocrystal of PPARg LBD with NFKBIB / IKBB peptide containing N-anchor motif LxxLL and agonist GW1929 To Be Published
8XOO	Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent Clp protease proteolytic subunit, ... Authors: Xu, X, Long, F. Deposit date: 2024-01-01 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (1.84 Å) Cite: Structural insights into the Clp protein degradation machinery. Mbio, 15, 2024
8YZ7	Crystal structure of DdrI, a CRP family protein from Deinococcus radiodurans Descriptor: POTASSIUM ION, Transcriptional regulator, FNR/CRP family Authors: Zhao, Y, Wang, Y. Deposit date: 2024-04-06 Release date: 2024-07-03 Last modified: 2024-07-31 Method: X-RAY DIFFRACTION (2 Å) Cite: cAMP-independent DNA binding of the CRP family protein DdrI from Deinococcus radiodurans . Mbio, 15, 2024
7N02	X-ray crystallographic structure model of Lactococcus lactis prolidase mutant D36S Descriptor: Aminopeptidase P family protein, MANGANESE (II) ION Authors: Xu, S, Grochulski, P, Tanaka, T. Deposit date: 2021-05-24 Release date: 2021-06-02 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystallographic structure of recombinant Lactococcus lactis prolidase to support proposed structure-function relationships. Biochim Biophys Acta Proteins Proteom, 1865, 2017
9FZC	Structure of OmpA-short in complex with nanobody Nb01 Descriptor: CALCIUM ION, N-OCTANE, Nanobody 01, ... Authors: Ackle, F, Sorgenfrei, M, Seeger, M.A. Deposit date: 2024-07-05 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Rapid detection and capture of clinical Escherichia coli strains mediated by OmpA-targeting nanobodies To Be Published
8VYL	The structure of Human Hemoglobin in Complex with Nanobody BtNbE11 Descriptor: ACETYL GROUP, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Grinter, R, Binks, S, Fox, D. Deposit date: 2024-02-08 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (2.02 Å) Cite: The structure of a haemoglobin-nanobody complex reveals human beta-subunit-specific interactions. Febs Lett., 2024
8VAE	Cryogenic electron microscopy structure of human serum albumin in complex with salicylic acid Descriptor: 2-HYDROXYBENZOIC ACID, Serum albumin Authors: Catalano, C, Lucier, K.W, To, D, Senko, S, Tran, N.L, Farwell, A.C, Silva, S.M, Dip, P.V, Poweleit, N, Scapin, G. Deposit date: 2023-12-11 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: The CryoEM structure of human serum albumin in complex with ligands. J.Struct.Biol., 216, 2024
8Z8J	Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 2 Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-R(*AP*GP*AP*GP*AP*AP*AP*UP*CP*AP*AP*GP*GP*CP*AP*GP*UP*U)-3'), ... Authors: Xue, L, Chang, T, Li, Z, Zhao, H, Li, M, He, J, Chen, X, Xiong, X. Deposit date: 2024-04-22 Release date: 2024-05-29 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: Cryo-EM structures of Thogoto virus polymerase reveal unique RNA transcription and replication mechanisms among orthomyxoviruses. Nat Commun, 15, 2024
9CA0	Human TOP3B-TDRD3 core complex in DNA pre-cleavage state Descriptor: DNA (5'-D(*AP*TP*T)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*AP*A)-3'), DNA topoisomerase 3-beta-1, ... Authors: Yang, X, Chen, X, Yang, W, Pommier, Y. Deposit date: 2024-06-16 Release date: 2024-07-17 Method: ELECTRON MICROSCOPY (3.48 Å) Cite: Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics To Be Published
8YTP	Single-chain Fv antibody of E11 complex with NP-glycine under reducing conditions Descriptor: 2-[2-(3-nitro-4-oxidanyl-phenyl)ethanoylamino]ethanoic acid, Single-chain Fv antibody of E11 Authors: Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M. Deposit date: 2024-03-26 Release date: 2024-07-03 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.36 Å) Cite: Affinity-matured antibody with a disulfide bond in H-CDR3 loop. Arch.Biochem.Biophys., 758, 2024
8WQL	In situ PBS-PSII supercomplex from cyanobacterial Spirulina platensis Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: You, X, Zhang, X, Xiao, Y.N, Sun, S, Sui, S.F. Deposit date: 2023-10-11 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of in situ PBS-PSII supercomplex at 3.5 Angstroms resolution. To Be Published
8VAF	Cryogenic electron microscopy structure of apo human serum albumin Descriptor: Serum albumin Authors: Catalano, C, Lucier, K.W, To, D, Senko, S, Tran, N.L, Farwell, A.C, Silva, S.M, Dip, P.V, Poweleit, N, Scapin, G. Deposit date: 2023-12-11 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: The CryoEM structure of human serum albumin in complex with ligands. J.Struct.Biol., 216, 2024
8XEA	XBB.1.5 spike protein in complex with BD55-1205 Descriptor: BD55-1205 heavy chain, BD55-1205 light chain, Spike glycoprotein Authors: Feng, L.L. Deposit date: 2023-12-11 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: XBB.1.5 spike protein in complex with BD55-1205 To Be Published

<724725726727728729730731732733734735736737738739>