PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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8TJG	Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+ Descriptor: DNA-(apurinic or apyrimidinic site) lyase, ZINC ION Authors: Warren, G, Shuman, S. Deposit date: 2023-07-21 Release date: 2024-03-06 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+ To Be Published
2MW8	Solution structure of SATB1 homeodomain Descriptor: DNA-binding protein SATB1 Authors: Yamasaki, K, Yamasaki, T. Deposit date: 2014-10-31 Release date: 2015-11-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of SATB1 homeodomain To be Published
5OD6	Crystal structure of Smad3-MH1 bound to the GGCGC site. Descriptor: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'), Mothers against decapentaplegic homolog 3, ZINC ION Authors: Kaczmarska, Z, Marquez, J.A, Macias, M.J. Deposit date: 2017-07-04 Release date: 2017-11-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors. Nat Commun, 8, 2017
6EKM	Crystal structure of mammalian Rev7 in complex with human Rev3 second binding site Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B Authors: Huber, F, Tropia, L, Emamzadah, S, Halazonetis, T. Deposit date: 2017-09-26 Release date: 2018-10-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.76 Å) Cite: Crystal structure of mammalian Rev7 in complex with human Rev3 To Be Published
6UML	Structural Basis for Thalidomide Teratogenicity Revealed by the Cereblon-DDB1-SALL4-Pomalidomide Complex Descriptor: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... Authors: Clayton, T.L, Matyskiela, M.E, Pagarigan, B.E, Tran, E.T, Chamberlain, P.P. Deposit date: 2019-10-09 Release date: 2020-04-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.58 Å) Cite: Crystal structure of the SALL4-pomalidomide-cereblon-DDB1 complex. Nat.Struct.Mol.Biol., 27, 2020
7S3C	Crystal structure of intact U2AF65 RRM-region bound to AdML-A5 oligonucleotide Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*AP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit Authors: Glasser, E, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
7S3A	Crystal structure of intact U2AF65 RRM-region bound to AdML-C5 oligonucleotide Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*CP*U)-D(P*(BRU))-R(P*CP*C)-3'), SODIUM ION, Splicing factor U2AF 65 kDa subunit Authors: Jenkins, J.L, Henderson, S, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.48 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
4KA4	Crystal structure of a proteolytically defined Zbeta domain of human DAI (ZBP1, DLM-1) Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), Z-DNA-binding protein 1 Authors: Athanasiadis, A, de Rosa, M, De Sanctis, D. Deposit date: 2013-04-22 Release date: 2013-05-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of a proteolytically defined Zbeta domain of human DAI (ZBP1, DLM-1) To be Published
2KV6	Tetrapeptide KWKK conjugated to oligonucleotide duplex by a trimethylene tether Descriptor: 5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3', KWKK Tetrapeptide Authors: Huang, H, Kozekov, I.D, Kozekova, A, Rizzo, C.J, McCullough, A, LLoyd, R.S, Stone, M.P. Deposit date: 2010-03-08 Release date: 2010-07-21 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Minor Groove Orientation of the KWKK Peptide Tethered via the N-Terminal Amine to the Acrolein-Derived 1,N(2)-gamma-Hydroxypropanodeoxyguanosine Lesion with a Trimethylene Linkage . Biochemistry, 49, 2010
7O1E	Crystal structure of PCNA from Chaetomium thermophilum Descriptor: Proliferating cell nuclear antigen Authors: Alphey, M.A, MacNeill, S, Yang, D. Deposit date: 2021-03-29 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
7O1F	PCNA from Chaetomium thermophilum in complex with PolD4 PIP peptide Descriptor: Peptide fragment from PolD4, Proliferating cell nuclear antigen, SODIUM ION Authors: Alphey, M.A, MacNeill, S, Yang, D. Deposit date: 2021-03-29 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
3JA8	Cryo-EM structure of the MCM2-7 double hexamer Descriptor: ADENOSINE-5'-DIPHOSPHATE, Minichromosome Maintenance 2, Minichromosome Maintenance 3, ... Authors: Li, N, Zhai, Y, Zhang, Y, Li, W, Yang, M, Lei, J, Tye, B.K, Gao, N. Deposit date: 2015-05-09 Release date: 2015-08-05 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structure of the eukaryotic MCM complex at 3.8 angstrom Nature, 524, 2015
2KLO	Structure of the Cdt1 C-terminal domain Descriptor: DNA replication factor Cdt1 Authors: Khayrutdinov, B.I, Bae, W.J, Yun, Y.M, Tsuyama, T, Kim, J.J, Hwang, E, Ryu, K.-S, Cheong, H.-K, Cheong, C, Karplus, P.A, Guntert, P, Tada, S, Jeon, Y.H, Cho, Y. Deposit date: 2009-07-06 Release date: 2009-10-13 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of the Cdt1 C-terminal domain: Conservation of the winged helix fold in replication licensing factors Protein Sci., 18, 2009
2CKC	Solution structures of the BRK domains of the human Chromo Helicase Domain 7 and 8, reveals structural similarity with GYF domain suggesting a role in protein interaction Descriptor: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7 Authors: Ab, E, de Jong, R.N, Diercks, T, Xiaoyun, J, Daniels, M, Kaptein, R, Folkers, G.E. Deposit date: 2006-04-14 Release date: 2007-05-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution Structures of the Brk Domains of the Human Chromo Helicase Domain 7 and 8, Reveals Structural Similarity with Gyf Domain Suggesting a Role in Protein Interaction To be Published
8TK7	Myxococcus xanthus EncA protein shell with compartmentalized SNAP-tag cargo protein Descriptor: Methylated-DNA--protein-cysteine methyltransferase, Type 1 encapsulin shell protein EncA Authors: Andreas, M.P, Kwon, S, Giessen, T.W. Deposit date: 2023-07-25 Release date: 2023-09-13 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (2.53 Å) Cite: Structure and heterogeneity of a highly cargo-loaded encapsulin shell. J.Struct.Biol., 215, 2023
8K87	Dimer structure of procaryotic Ago Descriptor: DNA (41-mer), MAGNESIUM ION, Piwi domain protein, ... Authors: Gao, X, Sun, D, Cui, S, Wang, Y. Deposit date: 2023-07-29 Release date: 2024-07-03 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural Basis of prokaryotic Argonaute System To Be Published
8EVG	162bp CX3CR1 nucleosome (further classified with better nucleosome end) Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Tengfei, L, Ruifang, G, Yawen, B. Deposit date: 2022-10-20 Release date: 2023-11-01 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Structural basis of cooperative targeting of the CX3CR1 nucleosome To Be Published
8TNP	Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40 Descriptor: DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, Protein cereblon, ... Authors: Roy Burman, S.S, Hunkeler, M, Fischer, E.S. Deposit date: 2023-08-02 Release date: 2024-03-13 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Continuous evolution of compact protein degradation tags regulated by selective molecular glues. Science, 383, 2024
5MKW	Crystal structure of the human ZRANB3 HNH domain Descriptor: DNA annealing helicase and endonuclease ZRANB3, GLYCEROL, ZINC ION Authors: Ariza, A. Deposit date: 2016-12-05 Release date: 2017-06-28 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insights into the function of ZRANB3 in replication stress response. Nat Commun, 8, 2017
6H0G	Structure of the DDB1-CRBN-pomalidomide complex bound to ZNF692(ZF4) Descriptor: DNA damage-binding protein 1,DNA damage-binding protein 1,DNA damage-binding protein 1,DDB1 (DNA damage binding protein 1),DNA damage-binding protein 1,DNA damage-binding protein 1,DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... Authors: Bunker, R.D, Petzold, G, Thoma, N.H. Deposit date: 2018-07-09 Release date: 2018-11-07 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (4.25 Å) Cite: Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN. Science, 362, 2018
5WCE	Caulobacter crescentus pol III beta Descriptor: DNA polymerase III subunit beta Authors: Oakley, A.J. Deposit date: 2017-06-30 Release date: 2017-07-26 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of Pol III beta from Caulobacter crescentus To Be Published
6A1O	Crystal structures of disordered Z-type helices Descriptor: DNA (5'-D(P*CP*A)-3'), DNA (5'-D(P*CP*AP*CP*A)-3'), DNA (5'-D(P*TP*G)-3'), ... Authors: Karthik, S, Mandal, P.K, Thirugnanasambandam, A, Gautham, N. Deposit date: 2018-06-07 Release date: 2019-01-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Crystal structures of disordered Z-type helices. Nucleosides Nucleotides Nucleic Acids, 38, 2019
6A1Q	Crystal structures of disordered Z-type helices Descriptor: DNA (5'-D(P*CP*AP*CP*A)-3'), DNA (5'-D(P*TP*GP*TP*G)-3') Authors: Karthik, S, Mandal, P.K, Thirugnanasambandam, A, Gautham, N. Deposit date: 2018-06-07 Release date: 2019-01-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.501 Å) Cite: Crystal structures of disordered Z-type helices. Nucleosides Nucleotides Nucleic Acids, 38, 2019
6MC6	Crystal structure of PprA filament from Deinococcus radiodurans Descriptor: DNA repair protein PprA Authors: Szabla, R, Junop, M.S, Wood, K. Deposit date: 2018-08-30 Release date: 2018-09-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.747 Å) Cite: Crystal structure of PprA from Deinococcus radiodurans To Be Published
4XZQ	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis Descriptor: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... Authors: Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. Deposit date: 2015-02-04 Release date: 2015-10-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015

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