PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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1RAJ	Poliovirus Polymerase with a 68 residue N-terminal truncation Descriptor: Genome polyprotein Authors: Thompson, A.A, Peersen, O.B. Deposit date: 2003-10-31 Release date: 2004-08-17 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase. Embo J., 23, 2004
7YZC	Crystal structure of the zebrafish FoxH1 bound to the TGTTTATT site Descriptor: ACETATE ION, DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*TP*TP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*AP*AP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)-3'), ... Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-19 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZ7	Crystal structure of the zebrafish FoxH1 bound to the TGTGGATT site Descriptor: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*GP*GP*AP*TP*TP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*AP*AP*TP*CP*CP*AP*CP*AP*AP*TP*CP*T)-3'), Forkhead box protein H1, ... Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-18 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZB	Crystal structure of the human FoxH1 bound to the TGTGGATT site Descriptor: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*GP*GP*AP*TP*TP*GP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*CP*AP*AP*TP*CP*CP*AP*CP*AP*AP*TP*CP*T)-3'), Forkhead box protein H1, ... Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-19 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZD	Crystal structure of the zebrafish FoxH1 bound to the TGTTTACT site (fkh motif GTAAACA) Descriptor: ACETATE ION, DNA (5'-D(*TP*CP*TP*CP*AP*GP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)-3'), DNA (5'-D(P*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*CP*TP*GP*AP*GP*A)-3'), ... Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-19 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZG	Crystal structure of the Xenopus FoxH1 bound to the TGTGGATT site Descriptor: DNA (5'-D(*CP*AP*GP*AP*TP*TP*GP*TP*GP*GP*AP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*TP*CP*CP*AP*CP*AP*AP*TP*CP*TP*G)-3'), Forkhead box protein H1 Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-19 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZE	Crystal structure of the human FoxA2 bound to the TGTTTACT site (forkhead motif GTAAACA) Descriptor: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*CP*TP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*AP*GP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)-3'), Hepatocyte nuclear factor 3-beta, ... Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-19 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZF	Crystal structure of the human FoxA2 bound to the TGTTTATT site (forkhead motif ATAAACA) Descriptor: DNA (5'-D(P*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*TP*TP*GP*AP*GP*A)-3'), DNA (5'-D(P*TP*CP*TP*CP*AP*AP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)-3'), Hepatocyte nuclear factor 3-beta, ... Authors: Pluta, R, Macias, M.J. Deposit date: 2022-02-19 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
4G37	Structure of cross-linked firefly luciferase in second catalytic conformation Descriptor: 4,4'-(ethylenediimino)bis[4-oxobutyrate], 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, CHLORIDE ION, ... Authors: Sundlov, J.A, Branchini, B.R, Gulick, A.M. Deposit date: 2012-07-13 Release date: 2012-08-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.396 Å) Cite: Crystal structure of firefly luciferase in a second catalytic conformation supports a domain alternation mechanism. Biochemistry, 51, 2012
8QH3	5'vRNA-bound Hantaan virus polymerase in monomeric active state Descriptor: MAGNESIUM ION, RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*GP*AP*CP*A)-3'), RNA-directed RNA polymerase L Authors: Durieux Trouilleton, Q, Arragain, B, Malet, H. Deposit date: 2023-09-06 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Structural characterization of the oligomerization of full-length Hantaan virus polymerase into symmetric dimers and hexamers. Nat Commun, 15, 2024
7N2M	Crystal structure of DNA polymerase alpha catalytic core in complex with dCTP and template/primer having T-C mismatch at the post-insertion site Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*T*AP*GP*TP*CP*GP*CP*TP*CP*CP*AP*GP*GP*C)-3'), DNA polymerase alpha catalytic subunit, ... Authors: Tahirov, T.H, Baranovskiy, A.G, Babayeva, N.D. Deposit date: 2021-05-29 Release date: 2022-04-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and functional insight into mismatch extension by human DNA polymerase alpha. Proc.Natl.Acad.Sci.USA, 119, 2022
8IUO	respiratory syncytial virus nucleocapsid-like assembly Descriptor: Nucleoprotein, RNA (35-MER) Authors: Wang, Y, Luo, Y, Ling, X, Luo, B, Jia, G, Dong, H, Su, Z. Deposit date: 2023-03-24 Release date: 2023-09-06 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Cryo-EM structure of the nucleocapsid-like assembly of respiratory syncytial virus. Signal Transduct Target Ther, 8, 2023
7SGS	Cryo-EM structure of full-length MAP7 bound to the microtubule Descriptor: Ensconsin, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Ferro, L.S, Fang, Q, Eshun-Wilson, L, Fernandes, J, Jack, A, Farrell, D.P, Golcuk, M, Huijben, T, Costa, K, Gur, M, DiMaio, F, Nogales, E, Yildiz, A. Deposit date: 2021-10-07 Release date: 2022-05-18 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7. Science, 375, 2022
7BW4	Structure of the RNA-dependent RNA polymerase from SARS-CoV-2 Descriptor: Non-structural protein 7, Non-structural protein 8, RNA-directed RNA polymerase, ... Authors: Peng, Q, Peng, R, Shi, Y. Deposit date: 2020-04-13 Release date: 2020-05-27 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural and Biochemical Characterization of the nsp12-nsp7-nsp8 Core Polymerase Complex from SARS-CoV-2. Cell Rep, 31, 2020
3WXM	Crystal structure of archaeal Pelota and GTP-bound EF1 alpha complex Descriptor: Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kobayashi, K, Ishitani, R, Nureki, O. Deposit date: 2014-08-04 Release date: 2014-09-03 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1 alpha complex Proc.Natl.Acad.Sci.USA, 107, 2010
8OP2	Stacks of nucleocapsid rings of the N1-370 mutant of the human Respiratory Syncytial Virus Descriptor: Nucleoprotein, RNA (70-mer) Authors: Gonnin, L, Desfosses, A, Gutsche, I. Deposit date: 2023-04-06 Release date: 2023-09-27 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural landscape of the respiratory syncytial virus nucleocapsids. Nat Commun, 14, 2023
8OOU	Double-ring nucleocapsid of the Respiratory Syncytial Virus Descriptor: Nucleoprotein, RNA (70-mer) Authors: Gonnin, L, Desfosses, A, Gutsche, I. Deposit date: 2023-04-06 Release date: 2023-09-27 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural landscape of the respiratory syncytial virus nucleocapsids. Nat Commun, 14, 2023
7BLV	Crystal structure of the tick-borne encephalitis virus NS3 helicase in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, NS3 helicase domain Authors: Anindita, P.D, Grinkevich, P, Franta, Z. Deposit date: 2021-01-19 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.099 Å) Cite: Mechanistic insight into the RNA-stimulated ATPase activity of tick-borne encephalitis virus helicase. J.Biol.Chem., 298, 2022
7WWU	ICP1 Csy complex Descriptor: Csy1, Csy2, Csy3, ... Authors: Zhang, M, Peng, R. Deposit date: 2022-02-14 Release date: 2023-04-26 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Mechanistic insights into DNA binding and cleavage by a compact type I-F CRISPR-Cas system in bacteriophage. Proc.Natl.Acad.Sci.USA, 120, 2023
7BM0	Crystal structure of the tick-borne encephalitis virus NS3 helicase in complex with AMPPNP Descriptor: MANGANESE (II) ION, NS3 helicase domain, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Anindita, P.D, Grinkevich, P, Franta, Z. Deposit date: 2021-01-19 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Mechanistic insight into the RNA-stimulated ATPase activity of tick-borne encephalitis virus helicase. J.Biol.Chem., 298, 2022
1ZBU	crystal structure of full-length 3'-exonuclease Descriptor: 3'-5' exonuclease ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION Authors: Cheng, Y, Patel, D.J. Deposit date: 2005-04-08 Release date: 2006-09-19 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.998 Å) Cite: Structural basis for 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease, a human nuclease that also targets siRNA To be Published
4QUU	Structure of the bromodomain of human ATPase family AAA domain-containing protein 2 (ATAD2) complexed with Histone H4-K(ac)5 Descriptor: 1,2-ETHANEDIOL, ATPase family AAA domain-containing protein 2, Histone H4, ... Authors: Chaikuad, A, Felletar, I, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC) Deposit date: 2014-07-12 Release date: 2014-07-30 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Atad2 is a generalist facilitator of chromatin dynamics in embryonic stem cells. J Mol Cell Biol, 8, 2016
7V2Y	cryo-EM structure of yeast THO complex with Sub2 Descriptor: ATP-dependent RNA helicase SUB2, Protein TEX1, THO complex subunit 2, ... Authors: Chen, C, Tan, M, Wu, Z, Wu, J, Lei, M. Deposit date: 2021-08-10 Release date: 2022-07-27 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural and functional insights into R-loop prevention and mRNA export by budding yeast THO-Sub2 complex. Sci Bull (Beijing), 66, 2021
5V5G	OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.4 Descriptor: 1,2-ETHANEDIOL, RNA-directed RNA polymerase L, SODIUM ION, ... Authors: Khare, B, Mark, B.L. Deposit date: 2017-03-14 Release date: 2017-05-10 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Potent and selective inhibition of pathogenic viruses by engineered ubiquitin variants. PLoS Pathog., 13, 2017
6WYA	RTX (Reverse Transcription Xenopolymerase) in complex with a DNA duplex and dAMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Choi, W.S, He, P, Pothukuchy, A, Gollihar, J, Ellington, A.D, Yang, W. Deposit date: 2020-05-12 Release date: 2020-08-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.41 Å) Cite: How a B family DNA polymerase has been evolved to copy RNA. Proc.Natl.Acad.Sci.USA, 117, 2020

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