7BQS
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![BU of 7bqs by Molmil](/molmil-images/mine/7bqs) | Solution NMR structure of fold-U Nomur; de novo designed protein with an asymmetric all-alpha topology | Descriptor: | Nomur | Authors: | Kobayashi, N, Nagashima, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N. | Deposit date: | 2020-03-25 | Release date: | 2021-04-07 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Design of complicated all-alpha protein structures Nat.Struct.Mol.Biol., 2024
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2AVP
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![BU of 2avp by Molmil](/molmil-images/mine/2avp) | Crystal structure of an 8 repeat consensus TPR superhelix | Descriptor: | CADMIUM ION, synthetic consensus TPR protein | Authors: | Kajander, T, Cortajarena, A.L, Main, E.R, Mochrie, S, Regan, L. | Deposit date: | 2005-08-30 | Release date: | 2005-09-13 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.04 Å) | Cite: | Structure and stability of designed TPR protein superhelices: unusual crystal packing and implications for natural TPR proteins. Acta Crystallogr.,Sect.D, 63, 2007
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1EIX
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![BU of 1eix by Molmil](/molmil-images/mine/1eix) | STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM E. COLI, CO-CRYSTALLISED WITH THE INHIBITOR BMP | Descriptor: | 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID, OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE | Authors: | Harris, P, Poulsen, J.C.N, Jensen, K.F, Larsen, S. | Deposit date: | 2000-02-29 | Release date: | 2000-03-15 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for the catalytic mechanism of a proficient enzyme: orotidine 5'-monophosphate decarboxylase. Biochemistry, 39, 2000
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5CY5
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![BU of 5cy5 by Molmil](/molmil-images/mine/5cy5) | Crystal structure of the T33-51H designed self-assembling protein tetrahedron | Descriptor: | T33-51H-A, T33-51H-B | Authors: | Cannon, K.A, Cascio, D, Park, R, Boyken, S, King, N, Yeates, T.O. | Deposit date: | 2015-07-30 | Release date: | 2016-08-10 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (3.4 Å) | Cite: | Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering. Protein Sci., 29, 2020
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2FO7
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![BU of 2fo7 by Molmil](/molmil-images/mine/2fo7) | |
5HKN
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![BU of 5hkn by Molmil](/molmil-images/mine/5hkn) | Crystal structure de novo designed fullerene organizing protein complex with fullerene | Descriptor: | (C_{60}-I_{h})[5,6]fullerene, fullerene organizing protein | Authors: | Paul, J, Acharya, R, Kim, K.-H, Kim, Y.H, Kim, N.H, Grigoryan, G, DeGardo, W.F. | Deposit date: | 2016-01-14 | Release date: | 2016-05-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.761 Å) | Cite: | Protein-directed self-assembly of a fullerene crystal. Nat Commun, 7, 2016
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5HKR
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![BU of 5hkr by Molmil](/molmil-images/mine/5hkr) | Crystal structure of de novo designed fullerene organising protein complex with fullerene | Descriptor: | (C_{60}-I_{h})[5,6]fullerene, fullerene organizing protein | Authors: | Acharya, R, Kim, Y.H, Grigoryan, G, DeGardo, W.F. | Deposit date: | 2016-01-14 | Release date: | 2016-05-04 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Protein-directed self-assembly of a fullerene crystal. Nat Commun, 7, 2016
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5UBS
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![BU of 5ubs by Molmil](/molmil-images/mine/5ubs) | Solution NMR Structure of NERD-S, a natively folded pentamutant of the B1 domain of streptococcal protein G (GB1) with a solvent-exposed Trp43 | Descriptor: | Immunoglobulin G-binding protein G | Authors: | Damry, A.M, Davey, J.A, Goto, N.K, Chica, R.A. | Deposit date: | 2016-12-21 | Release date: | 2017-08-23 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Rational design of proteins that exchange on functional timescales. Nat. Chem. Biol., 13, 2017
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1UAO
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![BU of 1uao by Molmil](/molmil-images/mine/1uao) | |
5UCE
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![BU of 5uce by Molmil](/molmil-images/mine/5uce) | Solution NMR structure of the major species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1) | Descriptor: | Immunoglobulin G-binding protein G | Authors: | Damry, A.M, Davey, J.A, Goto, N.K, Chica, R.A. | Deposit date: | 2016-12-22 | Release date: | 2017-08-23 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Rational design of proteins that exchange on functional timescales. Nat. Chem. Biol., 13, 2017
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5UCF
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![BU of 5ucf by Molmil](/molmil-images/mine/5ucf) | Solution NMR-derived model of the minor species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1) | Descriptor: | Immunoglobulin G-binding protein G | Authors: | Damry, A.M, Davey, J.A, Goto, N.K, Chica, R.A. | Deposit date: | 2016-12-22 | Release date: | 2017-08-23 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Rational design of proteins that exchange on functional timescales. Nat. Chem. Biol., 13, 2017
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5UB0
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![BU of 5ub0 by Molmil](/molmil-images/mine/5ub0) | Solution NMR Structure of NERD-C, a natively folded tetramutant of the B1 domain of streptococcal protein G (GB1) | Descriptor: | Immunoglobulin G-binding protein G | Authors: | Damry, A.M, Davey, J.A, Goto, N.K, Chica, R.A. | Deposit date: | 2016-12-20 | Release date: | 2017-08-23 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Rational design of proteins that exchange on functional timescales. Nat. Chem. Biol., 13, 2017
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2X6P
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![BU of 2x6p by Molmil](/molmil-images/mine/2x6p) | Crystal Structure of Coil Ser L19C | Descriptor: | COIL SER L19C, ZINC ION | Authors: | Chakraborty, S, Touw, D.S, Peacock, A.F.A, Stuckey, J.A, Pecoraro, V.L. | Deposit date: | 2010-02-18 | Release date: | 2010-09-22 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structural Comparisons of Apo- and Metalated Three-Stranded Coiled Coils Clarify Metal Binding Determinants in Thiolate Containing Designed Peptides. J.Am.Chem.Soc., 132, 2010
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7XM1
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![BU of 7xm1 by Molmil](/molmil-images/mine/7xm1) | Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions | Descriptor: | BARIUM ION, TIP60 K67E mutant | Authors: | Ohara, N, Kawakami, N, Arai, R, Adachi, N, Moriya, T, Kawasaki, M, Miyamoto, K. | Deposit date: | 2022-04-24 | Release date: | 2023-01-04 | Last modified: | 2023-11-29 | Method: | ELECTRON MICROSCOPY (3.96 Å) | Cite: | Reversible Assembly of an Artificial Protein Nanocage Using Alkaline Earth Metal Ions. J.Am.Chem.Soc., 145, 2023
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6B85
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![BU of 6b85 by Molmil](/molmil-images/mine/6b85) | Crystal structure of transmembrane protein TMHC4_R | Descriptor: | TMHC4_R | Authors: | Lu, P, DiMaio, F, Min, D, Bowie, J, Wei, K.Y, Baker, D. | Deposit date: | 2017-10-05 | Release date: | 2018-03-14 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.889 Å) | Cite: | Accurate computational design of multipass transmembrane proteins. Science, 359, 2018
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4GMR
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![BU of 4gmr by Molmil](/molmil-images/mine/4gmr) | Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR266. | Descriptor: | NITRATE ION, OR266 DE NOVO PROTEIN | Authors: | Vorobiev, S, Su, M, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Mao, M, Xiao, R, Lee, D, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2012-08-16 | Release date: | 2012-08-29 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.377 Å) | Cite: | Computational design of self-assembling cyclic protein homo-oligomers. NAT.CHEM., 9, 2017
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6B87
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![BU of 6b87 by Molmil](/molmil-images/mine/6b87) | Crystal structure of transmembrane protein TMHC2_E | Descriptor: | TMHC2_E | Authors: | Lu, P, DiMaio, F, Min, D, Wei, K.Y, Bowie, J, Baker, D. | Deposit date: | 2017-10-05 | Release date: | 2018-03-14 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.947 Å) | Cite: | Accurate computational design of multipass transmembrane proteins. Science, 359, 2018
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7BQQ
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![BU of 7bqq by Molmil](/molmil-images/mine/7bqq) | Solution NMR structure of fold-Z Gogy; de novo designed protein with an asymmetric all-alpha topology | Descriptor: | Gogy | Authors: | Kobayashi, N, Sugiki, T, Fujiwara, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N. | Deposit date: | 2020-03-25 | Release date: | 2021-04-07 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Design of complicated all-alpha protein structures Nat.Struct.Mol.Biol., 2024
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7BQM
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![BU of 7bqm by Molmil](/molmil-images/mine/7bqm) | Solution NMR structure of fold-0 Chantal; de novo designed protein with an asymmetric all-alpha topology | Descriptor: | Chantal | Authors: | Kobayashi, N, Sugiki, T, Fujiwara, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N. | Deposit date: | 2020-03-25 | Release date: | 2021-04-07 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Design of complicated all-alpha protein structures Nat.Struct.Mol.Biol., 2024
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7BQN
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![BU of 7bqn by Molmil](/molmil-images/mine/7bqn) | Solution NMR structure of fold-C Rei; de novo designed protein with an asymmetric all-alpha topology | Descriptor: | Rei | Authors: | Kobayashi, N, Sugiki, T, Fujiwara, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N. | Deposit date: | 2020-03-25 | Release date: | 2021-04-07 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Design of complicated all-alpha protein structures Nat.Struct.Mol.Biol., 2024
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3MLG
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![BU of 3mlg by Molmil](/molmil-images/mine/3mlg) | 2ouf-2x, a designed knotted protein | Descriptor: | 2X chimera of Helicobacter pylori protein HP0242 | Authors: | King, N.P, Sawaya, M.R, Jacobitz, A.W, Yeates, T.O. | Deposit date: | 2010-04-16 | Release date: | 2010-05-12 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | Structure and folding of a designed knotted protein. Proc.Natl.Acad.Sci.USA, 107, 2010
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4TQL
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![BU of 4tql by Molmil](/molmil-images/mine/4tql) | Computationally designed three helix bundle | Descriptor: | Three helix bundle | Authors: | Nannenga, B.L, Oberdorfer, G, DiMaio, F, Baker, D, Gonen, T. | Deposit date: | 2014-06-11 | Release date: | 2014-10-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | High thermodynamic stability of parametrically designed helical bundles. Science, 346, 2014
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7BQR
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![BU of 7bqr by Molmil](/molmil-images/mine/7bqr) | Solution NMR structure of fold-K Mussoc; de novo designed protein with an asymmetric all-alpha topology | Descriptor: | Mussoc | Authors: | Kobayashi, N, Nagashima, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N. | Deposit date: | 2020-03-25 | Release date: | 2021-04-07 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Design of complicated all-alpha protein structures Nat.Struct.Mol.Biol., 2024
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3LT8
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![BU of 3lt8 by Molmil](/molmil-images/mine/3lt8) | A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding, crystallized in the presence of 100 mM ATP. | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-D65V, CHLORIDE ION, ... | Authors: | Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C. | Deposit date: | 2010-02-15 | Release date: | 2010-09-22 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry, 49, 2010
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3LT9
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![BU of 3lt9 by Molmil](/molmil-images/mine/3lt9) | A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-D65V, CHLORIDE ION, ... | Authors: | Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C. | Deposit date: | 2010-02-15 | Release date: | 2010-09-22 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry, 49, 2010
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