PDB: 98078 resultsInfo pagesStatus searchChemie searchBIRD

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6GCV	Ligand binding domain (LBD) of the p. aeruginosa nitrate receptor McpN Descriptor: ACETATE ION, Chemotaxis transducer, NITRATE ION, ... Authors: Gavira, J.A, Krell, T, Martin-Mora, D, Ortega, A. Deposit date: 2018-04-19 Release date: 2018-09-19 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN. MBio, 10, 2019
7JGJ	IgA1 Protease in complex with neutralizing mAb Descriptor: Immunoglobulin A1 protease, mAB Heavy Chain, mAB Light Chain Authors: Eisenmesser, E.Z, Zheng, H. Deposit date: 2020-07-19 Release date: 2020-12-09 Last modified: 2025-05-28 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Mechanism and inhibition of Streptococcus pneumoniae IgA1 protease Nat Commun, 11, 2020
1MKW	THE CO-CRYSTAL STRUCTURE OF UNLIGANDED BOVINE ALPHA-THROMBIN AND PRETHROMBIN-2: MOVEMENT OF THE YPPW SEGMENT AND ACTIVE SITE RESIDUES UPON LIGAND BINDING Descriptor: ALPHA-THROMBIN, PRETHROMBIN-2 Authors: Malkowski, M.G, Edwards, B.F.P. Deposit date: 1997-03-13 Release date: 1997-07-07 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The co-crystal structure of unliganded bovine alpha-thrombin and prethrombin-2: movement of the Tyr-Pro-Pro-Trp segment and active site residues upon ligand binding. Protein Sci., 6, 1997
1MKX	THE CO-CRYSTAL STRUCTURE OF UNLIGANDED BOVINE ALPHA-THROMBIN AND PRETHROMBIN-2: MOVEMENT OF THE YPPW SEGMENT AND ACTIVE SITE RESIDUES UPON LIGAND BINDING Descriptor: ALPHA-THROMBIN, PRETHROMBIN-2 Authors: Malkowski, M.G, Edwards, B.F.P. Deposit date: 1997-03-13 Release date: 1997-07-07 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The co-crystal structure of unliganded bovine alpha-thrombin and prethrombin-2: movement of the Tyr-Pro-Pro-Trp segment and active site residues upon ligand binding. Protein Sci., 6, 1997
8ZEU	CryoEM structure of GR2002-F(ab')2: TSLP complex Descriptor: Fab fragment, light chain, Fab-H1A10 fragment, ... Authors: Zhigang, L, Junjie, H. Deposit date: 2024-05-07 Release date: 2025-05-28 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: Preclinical development of GR2002, a novel anti-TSLP bispecific antibody with potent TSLP inhibitory effects To Be Published
7JQG	Crystal structure of human PPARgamma ligand binding domain Y473E mutant in complex with GW1929 Descriptor: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, Peroxisome proliferator-activated receptor gamma Authors: Shang, J, Kojetin, D.J. Deposit date: 2020-08-10 Release date: 2021-03-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021
6JDY	Ligand complex structure of GH10 family xylanase XynAF1, soaking for 120 minutes Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-xylanase, ... Authors: Li, G, Miao, Y, Zhang, R. Deposit date: 2019-02-02 Release date: 2020-05-20 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure of GH10 family xylanase XynAF1 from Aspergillus fumigatus Z5 To Be Published
9I77	Deubiquitinase DUB16 from Leishmania donovani Descriptor: Ubiquitin carboxyl-terminal hydrolase Authors: Brannigan, J.A, Dodson, E.J, Wilkinson, A.J. Deposit date: 2025-01-31 Release date: 2025-07-09 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure and activity of the essential UCH family deubiquitinase DUB16 from Leishmania donovani. Biochem.J., 2025
6JDZ	Ligand complex structure of GH10 family xylanase XynAF1, soaking for 20 minutes Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-xylanase, ... Authors: Li, G, Miao, Y, Zhang, R. Deposit date: 2019-02-02 Release date: 2020-05-20 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.16 Å) Cite: Crystal structure of GH10 family xylanase XynAF1 from Aspergillus fumigatus Z5 To Be Published
6JE0	Ligand complex structure of GH10 family xylanase XynAF1, soaking for 30 minutes Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-xylanase, ... Authors: Li, G, Miao, Y, Zhang, R. Deposit date: 2019-02-02 Release date: 2020-05-20 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Crystal structure of GH10 family xylanase XynAF1 from Aspergillus fumigatus Z5 To Be Published
6JE1	Ligand complex structure of GH10 family xylanase XynAF1, soaking for 40 minutes Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-xylanase, ... Authors: Li, G, Miao, Y, Zhang, R. Deposit date: 2019-02-02 Release date: 2020-05-20 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Crystal structure of GH10 family xylanase XynAF1 from Aspergillus fumigatus Z5 To Be Published
5MJ6	Ligand-induced conformational change of Insulin-regulated aminopeptidase: insights on catalytic mechanism and active site plasticity. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, ... Authors: Mpakali, A, Stratikos, E, Saridakis, E, Giastas, P. Deposit date: 2016-11-30 Release date: 2017-04-05 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Ligand-Induced Conformational Change of Insulin-Regulated Aminopeptidase: Insights on Catalytic Mechanism and Active Site Plasticity. J. Med. Chem., 60, 2017
5LT9	Ligand binding domain of Pseudomonas aeruginosa PAO1 amino acid chemoreceptors PctB in complex with L-Arg Descriptor: ARGININE, GLYCEROL, Methyl-accepting chemotaxis protein PctB, ... Authors: Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T. Deposit date: 2016-09-06 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3 Å) Cite: How Bacterial Chemoreceptors Evolve Novel Ligand Specificities Mbio, 2020
6JE2	Ligand complex structure of GH10 family xylanase XynAF1, soaking for 80 minutes Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-xylanase, ... Authors: Li, G, Miao, Y, Zhang, R. Deposit date: 2019-02-02 Release date: 2020-05-20 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.22 Å) Cite: Crystal structure of GH10 family xylanase XynAF1 from Aspergillus fumigatus Z5 To Be Published
5LTO	Ligand binding domain of Pseudomonas aeruginosa PAO1 amino acid chemoreceptors PctB in complex with L-Gln Descriptor: GLUTAMINE, GLYCEROL, Methyl-accepting chemotaxis protein PctB, ... Authors: Gavira, J.A, Rico-Jimenez, M, Conejero-Muriel, M, Krell, T. Deposit date: 2016-09-07 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.459 Å) Cite: How Bacterial Chemoreceptors Evolve Novel Ligand Specificities Mbio, 2020
1KRP	DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex Descriptor: DNA (5'-D(P*TP*TP*PST)-3'), PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)), ZINC ION Authors: Brautigam, C.A, Steitz, T.A. Deposit date: 1997-08-19 Release date: 1998-02-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates. J.Mol.Biol., 277, 1998
1KSP	DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex Descriptor: DNA (5'-D(P*TP*TP*PST)-3'), PROTEIN (DNA POLYMERASE I-KLENOW FRAGMENT (E.C.2.7.7.7)), ZINC ION Authors: Brautigam, C.A, Steitz, T.A. Deposit date: 1997-08-19 Release date: 1998-02-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates. J.Mol.Biol., 277, 1998
2IQ5	Unliganded Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.90 A Resolution Descriptor: Uridine phosphorylase Authors: Timofeev, V.I, Dontsova, M.V, Gabdoulkhakov, A.G, Pavlyuk, B.P, Mikhailov, A.M. Deposit date: 2006-10-13 Release date: 2007-10-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Unliganded Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.90 A Resolution To be Published
7A0U	LIGAND FREE TYPE II E. COLI ASPARAGINASE T12S/T89S DOUBLE MUTANT Descriptor: L-asparaginase 2 Authors: Maggi, M, Scotti, C. Deposit date: 2020-08-10 Release date: 2021-08-18 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.260487 Å) Cite: LIGAND FREE TYPE II E. COLI ASPARAGINASE T12S/T89S DOUBLE MUTANT To Be Published
5T65	LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE Descriptor: ACETATE ION, ISOLEUCINE, Methyl-accepting chemotaxis protein PctA, ... Authors: Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T. Deposit date: 2016-09-01 Release date: 2017-09-13 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.2 Å) Cite: How Bacterial Chemoreceptors Evolve Novel Ligand Specificities Mbio, 2020
5T7M	LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-TRP Descriptor: ACETATE ION, Chemotaxis protein, SODIUM ION, ... Authors: Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T. Deposit date: 2016-09-05 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.25 Å) Cite: How Bacterial Chemoreceptors Evolve Novel Ligand Specificities Mbio, 2020
4F29	Quisqualate bound to the ligand binding domain of GluA3i Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, Glutamate receptor 3, ZINC ION Authors: Ahmed, A.H, Oswald, R.E. Deposit date: 2012-05-07 Release date: 2012-05-16 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.749 Å) Cite: The loss of an electrostatic contact unique to AMPA receptor ligand binding domain 2 slows channel activation. Biochemistry, 51, 2012
4F3B	Glutamate bound to the D655A mutant of the ligand binding domain of GluA3 Descriptor: GLUTAMIC ACID, Glutamate receptor 3, ZINC ION Authors: Ahmed, A.H, Oswald, R.E. Deposit date: 2012-05-09 Release date: 2012-05-30 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.818 Å) Cite: The loss of an electrostatic contact unique to AMPA receptor ligand binding domain 2 slows channel activation. Biochemistry, 51, 2012
4F31	Kainate bound to the D655A mutant of the ligand binding domain of GluA3 Descriptor: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, Glutamate receptor 3, ZINC ION Authors: Ahmed, A.H, Oswald, R.E. Deposit date: 2012-05-08 Release date: 2012-05-30 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.286 Å) Cite: The loss of an electrostatic contact unique to AMPA receptor ligand binding domain 2 slows channel activation. Biochemistry, 51, 2012
4F39	Kainate bound to the ligand binding domain of GluA3 Descriptor: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, Glutamate receptor 3, ZINC ION Authors: Ahmed, A.H, Oswald, R.E. Deposit date: 2012-05-09 Release date: 2012-05-30 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.834 Å) Cite: The loss of an electrostatic contact unique to AMPA receptor ligand binding domain 2 slows channel activation. Biochemistry, 51, 2012

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