PDB: 73665 resultsInfo pagesStatus searchChemie searchBIRD

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3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6PUQ	1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, ... Authors: Sjekloca, L, Ferre-D'Amare, A.R. Deposit date: 2019-07-18 Release date: 2020-07-22 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN. MicroPubl Biol, 2022, 2022
2RQL	Solution structure of the E. coli ribosome hibernation promoting factor HPF Descriptor: Probable sigma-54 modulation protein Authors: Sato, A, Mishima, M. Deposit date: 2009-08-13 Release date: 2010-02-02 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function. Biochem.Biophys.Res.Commun., 389, 2009
6PUP	1.9 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN Descriptor: FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, Wybutosine biosynthesis protein Tyw1 Authors: Sjekloca, L, Ferre D'Amare, A.R. Deposit date: 2019-07-18 Release date: 2020-07-29 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN. MicroPubl Biol, 2022, 2022
6X46	NMR solution structure of Asterix/Gtsf1 from mouse (CHHC zinc finger domains) Descriptor: Gametocyte-specific factor 1, ZINC ION Authors: Ipsaro, J.J, O'Brien, P.A, Bhattacharya, S, Palmer III, A.G, Joshua-Tor, L. Deposit date: 2020-05-22 Release date: 2021-03-03 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. Cell Rep, 34, 2021
6OY7	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 7 min Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OVR	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1G Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*GP*GP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*GP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-08 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.843 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY5	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min Descriptor: DNA (5'-D(*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*CP*TP*CP*TP*GP*AP*TP*GP*CP*AP*G)-3'), DNA (5'-D(P*CP*CP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
8E70	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, dC75 rut mimic RNA, Mg-ADP-BeF3, and NusG; Rho hexamer part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2022-08-23 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
6OW3	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1T Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*TP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-09 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.766 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY6	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.096 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6PB4	The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at the state 2 Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Liu, B, Shi, W. Deposit date: 2019-06-13 Release date: 2020-03-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.35 Å) Cite: Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
6P71	X-ray crystal structure of a bacterial reiterative transcription complex of pyrBI promoter Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*CP*GP*AP*GP*CP*CP*GP*GP*GP*A)-3'), DNA (5'-D(P*CP*TP*CP*CP*CP*GP*GP*CP*AP*AP*AP*TP*TP*GP*T)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-06-04 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.92 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OVY	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1C Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*TP*CP*TP*GP*AP*TP*G)-3'), DNA (5'-D(P*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*CP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-08 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.999 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
5AGQ	Solution structure of the TAM domain of human TIP5 BAZ2A involved in epigenetic regulation of rRNA genes Descriptor: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A Authors: Anosova, I, Melnik, S, Tripsianes, K, Kateb, F, Grummt, I, Sattler, M. Deposit date: 2015-02-03 Release date: 2015-05-06 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: A Novel RNA Binding Surface of the Tam Domain of Tip5/Baz2A Mediates Epigenetic Regulation of Rrna Genes. Nucleic Acids Res., 43, 2015
5UZN	Crystal structure of Glorund qRRM3 domain Descriptor: AT27789p, GLYCEROL, SULFATE ION Authors: Teramoto, T, Hall, T.M.T. Deposit date: 2017-02-27 Release date: 2017-03-29 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.99 Å) Cite: The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition. Cell Rep, 19, 2017
3J5Y	Structure of the mammalian ribosomal pre-termination complex associated with eRF1-eRF3-GDPNP Descriptor: 5'-R(*AP*UP*UP*GP*UP*AP*AP*AP*AP*A)-3', Eukaryotic peptide chain release factor GTP-binding subunit ERF3A, Eukaryotic peptide chain release factor subunit 1, ... Authors: des Georges, A, Hashem, Y, Unbehaun, A, Grassucci, R.A, Taylor, D, Hellen, C.U.T, Pestova, T.V, Frank, J. Deposit date: 2013-11-21 Release date: 2013-12-25 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (9.7 Å) Cite: Structure of the mammalian ribosomal pre-termination complex associated with eRF1*eRF3*GDPNP. Nucleic Acids Res., 42, 2014
4EMG	Crystal structure of SpLsm3 Descriptor: Probable U6 snRNA-associated Sm-like protein LSm3 Authors: Jiang, S.M, Wu, D.H, Song, H.W. Deposit date: 2012-04-12 Release date: 2012-06-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe. Plos One, 7, 2012
8E6W	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, lambda-tR1 rut RNA, Mg-ADP-BeF3, and NusG; Rho part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2022-08-23 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.27 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E5P	Escherichia coli Rho-dependent transcription pre-termination complex containing 24 nt long RNA spacer, Mg-ADP-BeF3, and NusG; Rho hexamer part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
5UZG	Crystal structure of Glorund qRRM1 domain Descriptor: AT27789p, GLYCEROL, SULFATE ION Authors: Teramoto, T, Hall, T.M.T. Deposit date: 2017-02-26 Release date: 2017-03-22 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.541 Å) Cite: The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition. Cell Rep, 19, 2017
4YN6	Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) Descriptor: PHOSPHATE ION, RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') Authors: Tawani, A, Kumar, A. Deposit date: 2015-03-09 Release date: 2015-04-22 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington's Disease (HD) and Spinocerebellar Ataxias (SCAs) Plos One, 10, 2015
3TPZ	2.1 Angstrom crystal structure of the L114P mutant of E. Coli KsgA Descriptor: CHLORIDE ION, PHOSPHATE ION, Ribosomal RNA small subunit methyltransferase A Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2011-09-08 Release date: 2012-02-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Control of Substrate Specificity by a Single Active Site Residue of the KsgA Methyltransferase. Biochemistry, 51, 2012
5UZM	Crystal structure of Glorund qRRM2 domain Descriptor: AT27789p Authors: Teramoto, T, Hall, T.M.T. Deposit date: 2017-02-27 Release date: 2017-03-22 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.552 Å) Cite: The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition. Cell Rep, 19, 2017

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