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1JB8	The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation Descriptor: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' Authors: Han, G.W, Kopka, M.L, Langs, D, Dickerson, R.E. Deposit date: 2001-06-02 Release date: 2003-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping Proc.Natl.Acad.Sci.USA, 100, 2003
2NOM	Terminal uridylyl transferase 4 from Trypanosoma brucei with bound dUTP Descriptor: DEOXYURIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA uridylyl transferase Authors: Luecke, H, Stagno, J. Deposit date: 2006-10-25 Release date: 2007-02-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: UTP-bound and Apo Structures of a Minimal RNA Uridylyltransferase. J.Mol.Biol., 366, 2007
8FUK	V. cholerae TniQ-Cascade complex with Type III-B crRNA Descriptor: CRISPR-associated protein Cas8, Cas6, Cas7, ... Authors: Chou, C.W, Finkelstein, I.J, Hu, K. Deposit date: 2023-01-17 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: V. cholerae TniQ-Cascade complex with Type III-B crRNA To be Published
1Z3A	Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli Descriptor: ZINC ION, tRNA-specific adenosine deaminase Authors: Malashkevich, V, Kim, J, Lisbin, M, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2005-03-10 Release date: 2006-02-21 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase. Biochemistry, 45, 2006
2QBZ	Structure of the M-Box Riboswitch Aptamer Domain Descriptor: M-Box RNA, ykoK riboswitch aptamer, MAGNESIUM ION, ... Authors: Dann III, C.E, Winkler, W.C. Deposit date: 2007-06-18 Release date: 2007-09-18 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure and mechanism of a metal-sensing regulatory RNA Cell(Cambridge,Mass.), 130, 2007
3CDU	Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with a pyrophosphate Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ... Authors: Gruez, A, Selisko, B, Roberts, M, Bricogne, G, Bussetta, C, Canard, B. Deposit date: 2008-02-27 Release date: 2008-07-22 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase in complex with its protein primer VPg confirms the existence of a second VPg binding site on Picornaviridae polymerases J.Virol., 82, 2008
4J39	Crystal structure of p19 in complex with double-helical 19mer RNA p(CAG)3C(CUG)3 Descriptor: 5'-R(P*CP*AP*GP*CP*AP*GP*CP*AP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3', RNA silencing suppressor p19, SULFATE ION Authors: Tamjar, J, Popov, A.N, Malinina, L. Deposit date: 2013-02-05 Release date: 2014-02-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Procrustean bed of RNA silencing suppression To be Published
4JNX	Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C Descriptor: 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3', MAGNESIUM ION, RNA silencing suppressor p19, ... Authors: Katorcha, E, Popov, A.N, Malinina, L. Deposit date: 2013-03-16 Release date: 2014-03-19 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Procrustean bed of RNA silencing suppression To be Published
2VRD	THE STRUCTURE OF THE ZINC FINGER FROM THE HUMAN SPLICEOSOMAL PROTEIN U1C Descriptor: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C, ZINC ION Authors: Muto, Y, Pomeranz-Krummel, D, Oubridge, C, Hernandez, H, Robinson, C, Neuhaus, D, Nagai, K. Deposit date: 2008-03-31 Release date: 2008-04-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The Structure and Biochemical Properties of the Human Spliceosomal Protein U1C J.Mol.Biol., 341, 2004
1IW7	Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution Descriptor: LEAD (II) ION, MAGNESIUM ION, RNA polymerase alpha subunit, ... Authors: RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2002-04-22 Release date: 2002-06-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution NATURE, 417, 2002
2A8K	Structural and Mutational Studies of the Catalytic Domain of Colicin E5a tRNA-Specific Ribonuclease Descriptor: CALCIUM ION, Colicin E5 Authors: Lin, Y.L, Elias, Y, Huang, R.H. Deposit date: 2005-07-08 Release date: 2005-09-20 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and mutational studies of the catalytic domain of colicin E5: A tRNA-specific ribonuclease Biochemistry, 44, 2005
4JVH	Structure of the star domain of quaking protein in complex with RNA Descriptor: Protein quaking, RNA (5'-R(*UP*UP*CP*AP*CP*UP*AP*AP*CP*AP*A)-3'), SULFATE ION Authors: Teplova, M, Hafner, M, Teplov, D, Essig, K, Tuschl, T, Patel, D.J. Deposit date: 2013-03-25 Release date: 2013-05-08 Method: X-RAY DIFFRACTION (3.501 Å) Cite: Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites. Genes Dev., 27, 2013
4JK0	Crystal structure of T89Q-mutant of RNA silencing suppressor p19 with 2nt-5'-overhanging double-helical RNA 21mer pUUUG(CUG)5CU Descriptor: 5'-R(P*UP*UP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*U)-3', RNA silencing suppressor p19, SULFATE ION Authors: Katorcha, E, Tamjar, J, Popov, A.N, Malinina, L. Deposit date: 2013-03-08 Release date: 2014-03-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Procrustean bed of RNA silencing suppression To be Published
8BH9	Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 427-435 / 496-504 Descriptor: PCIF1_WW domain-containing protein, POTASSIUM ION, RNA (5'-R(P*AP*AP*GP*AP*AP*UP*GP*CP*AP*UP*UP*C)-3') Authors: Rety, S, Chen, W.F, Xi, X.G. Deposit date: 2022-10-30 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 427-435 / 496-504 To Be Published
5U32	Crystal Structure of Fungal RNA Kinase Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, tRNA ligase Authors: Shuman, S, Goldgur, Y, Remus, B.S. Deposit date: 2016-12-01 Release date: 2017-11-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.191 Å) Cite: Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase. Nucleic Acids Res., 45, 2017
2DUL	Crystal structure of tRNA G26 methyltransferase Trm1 in apo form from Pyrococcus horikoshii Descriptor: GLYCEROL, N(2),N(2)-dimethylguanosine tRNA methyltransferase Authors: Ihsanawati, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-07-24 Release date: 2007-01-24 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol., 383, 2008
6A6L	Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*CP*AP*UP*(5MC))-3') Authors: Huang, Y. Deposit date: 2018-06-28 Release date: 2019-06-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA To Be Published
2RRB	Refinement of RNA binding domain in human Tra2 beta protein Descriptor: cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene Authors: Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Sugano, S, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2010-06-17 Release date: 2011-04-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis for the dual RNA-recognition modes of human Tra2-beta RRM. Nucleic Acids Res., 39, 2011
4DCG	VACCINIA METHYLTRANSFERASE VP39 MUTANT D182A COMPLEXED WITH M7G AND S-ADENOSYLHOMOCYSTEINE Descriptor: 7-METHYLGUANOSINE, S-ADENOSYL-L-HOMOCYSTEINE, VP39 Authors: Hu, G, Hodel, A.E, Gershon, P.D, Quiocho, F.A. Deposit date: 1998-07-13 Release date: 1999-07-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains. Proc.Natl.Acad.Sci.USA, 96, 1999
3V71	Crystal structure of PUF-6 in complex with 5BE13 RNA Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Puf (Pumilio/fbf) domain-containing protein 7, confirmed by transcript evidence, ... Authors: Qiu, C, Kershner, A, Wang, Y, Holley, C.H, Wilinski, D, Keles, S, Kimble, J, Wickens, M, Hall, T.M.T. Deposit date: 2011-12-20 Release date: 2012-01-04 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.902 Å) Cite: Divergence of PUF protein specificity through variations in an RNA-binding pocket J.Biol.Chem., 2012
4H4K	Structure of the Cmr2-Cmr3 subcomplex of the Cmr RNA-silencing complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, ... Authors: Shao, Y, Cocozaki, A.I, Ramia, N.F, Terns, R.M, Terns, M.P, Li, H. Deposit date: 2012-09-17 Release date: 2013-03-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.804 Å) Cite: Structure of the cmr2-cmr3 subcomplex of the cmr RNA silencing complex. Structure, 21, 2013
439D	5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3' Descriptor: BARIUM ION, RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3'), RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3') Authors: Perbandt, M, Lorenz, S, Vallazza, M, Erdmann, V.A, Betzel, C. Deposit date: 1999-01-05 Release date: 2001-09-14 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of an RNA duplex with an unusual G.C pair in wobble-like conformation at 1.6 A resolution. Acta Crystallogr.,Sect.D, 57, 2001
1ZYR	Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase omega chain, ... Authors: Tuske, S, Sarafianos, S.G, Wang, X, Hudson, B, Sineva, E, Mukhopadhyay, J, Birktoft, J.J, Leroy, O, Ismail, S, Clark, A.D, Dharia, C, Napoli, A, Laptenko, O, Lee, J, Borukhov, S, Ebright, R.H, Arnold, E. Deposit date: 2005-06-10 Release date: 2005-09-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3 Å) Cite: Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation. Cell(Cambridge,Mass.), 122, 2005
2CKZ	X-ray structure of RNA polymerase III subcomplex C17-C25. Descriptor: DNA-DIRECTED RNA POLYMERASE III 18 KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE III 25 KD POLYPEPTIDE Authors: Jasiak, A.J, Armache, K.-J, Martens, B, Jansen, R.-P, Cramer, P. Deposit date: 2006-04-24 Release date: 2006-07-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural Biology of RNA Polymerase III: Subcomplex C17/-C25 X-Ray Structure and 11-Subunit Enzyme Model Mol.Cell, 23, 2006
2RNE	Solution structure of the second RNA recognition motif (RRM) of TIA-1 Descriptor: Tia1 protein Authors: Takahashi, M, Kuwasako, K, Abe, C, Tsuda, K, Inoue, M, Terada, T, Shirouzu, M, Kobayashi, N, Kigawa, T, Taguchi, S, Guntert, P, Hayashizaki, Y, Tanaka, A, Muto, Y, Yokoyama, S. Deposit date: 2007-12-19 Release date: 2008-11-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode Biochemistry, 47, 2008

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