Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9RCQ
DownloadVisualize
BU of 9rcq by Molmil
1,2-propanediol dehydratase with no ligand additives
Descriptor: 1,2-ETHANEDIOL, Glycyl radical protein
Authors:Kalnins, G, Estere, M.
Deposit date:2025-05-29
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:1,2-propanediol dehydratase with no ligand additives
To Be Published
4UEJ
DownloadVisualize
BU of 4uej by Molmil
Closed state of galactitol-1-phosphate 5-dehydrogenase from E. coli in complex with glycerol.
Descriptor: GALACTITOL-1-PHOSPHATE 5-DEHYDROGENASE, GLYCEROL, ZINC ION
Authors:Benavente, R, Esteban-Torres, M, Kohring, G.W, Cortes-Cabrera, A, Gago, F, Acebron, I, de las Rivas, B, Munoz, R, Mancheno, J.M.
Deposit date:2014-12-18
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Enantioselective Oxidation of Galactitol 1-Phosphate by Galactitol-1-Phosphate 5-Dehydrogenase from Escherichia Coli
Acta Crystallogr.,Sect.D, 71, 2015
4UEK
DownloadVisualize
BU of 4uek by Molmil
Galactitol-1-phosphate 5-dehydrogenase from E. coli with Tris within the active site.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GALACTITOL-1-PHOSPHATE 5-DEHYDROGENASE, ZINC ION
Authors:Benavente, R, Esteban-Torres, M, Kohring, G.W, Cortes-Cabrera, A, Gago, F, Acebron, I, de las Rivas, B, Munoz, R, Mancheno, J.M.
Deposit date:2014-12-18
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enantioselective Oxidation of Galactitol 1-Phosphate by Galactitol-1-Phosphate 5-Dehydrogenase from Escherichia Coli
Acta Crystallogr.,Sect.D, 71, 2015
9RCO
DownloadVisualize
BU of 9rco by Molmil
1,2-propanediol dehydratase with 0.1 % glycerol additive
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glycyl radical protein
Authors:Kalnins, G, Estere, M.
Deposit date:2025-05-29
Release date:2025-06-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1,2-propanediol dehydratase with 0.1 % glycerol additive
To Be Published
9RCP
DownloadVisualize
BU of 9rcp by Molmil
1,2-propanediol dehydratase with 0.1 % 1,3-propanediol additive
Descriptor: 1,2-ETHANEDIOL, Glycyl radical protein
Authors:Kalnins, G, Estere, M.
Deposit date:2025-05-29
Release date:2025-06-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1,2-propanediol dehydratase with 0.1 % 1,3-propanediol additive
To Be Published
9UOA
DownloadVisualize
BU of 9uoa by Molmil
Crystal structure of HIV-1 Reverse Transcriptase RNase H domain complexed with a galloyl inhibitor
Descriptor: MANGANESE (II) ION, Reverse transcriptase/RNaseH, ZINC ION, ...
Authors:Wei, S, Fujimoto, K, Tang, K, Zhan, P, Menendez-Arias, L, Hoshino, T.
Deposit date:2025-04-25
Release date:2025-05-14
Last modified:2025-09-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural Analysis of HIV-1 RNase H Bound to a Galloyl Active Site Inhibitor and Computational Compound Modification.
Biochemistry, 64, 2025
9OBI
DownloadVisualize
BU of 9obi by Molmil
Room Temperature X-Ray Structure of HIV-1 Protease in Complex with Inhibitor GRL-075-24A
Descriptor: (1S,5S,7S)-7-(2-methoxyphenyl)-8-oxaspiro[4.5]decan-1-yl {(2S,3R)-3-hydroxy-4-[(4-methoxybenzene-1-sulfonyl)(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate, CHLORIDE ION, Protease
Authors:Bhandari, D, Kovalevsky, A, Ghosh, A.K.
Deposit date:2025-04-22
Release date:2025-07-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design, synthesis, evaluation and X-ray structural studies of potent HIV-1 protease inhibitors containing substituted oxaspirocyclic carbamates as the P2 ligands.
Eur.J.Med.Chem., 297, 2025
9QQT
DownloadVisualize
BU of 9qqt by Molmil
Methyl-coenzyme M reductase of ANME-2d Candidatus Methanoperedens Vercelli Strain 1 from a bioreactor enrichment culture
Descriptor: 1,2-ETHANEDIOL, 1-THIOETHANESULFONIC ACID, Coenzyme B, ...
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2025-04-02
Release date:2025-07-23
Last modified:2025-09-17
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Atomic resolution structures of the methane-activating enzyme in anaerobic methanotrophy reveal extensive post-translational modifications.
Nat Commun, 16, 2025
6P8N
DownloadVisualize
BU of 6p8n by Molmil
Crystal Structure of Antibody P-p1f1 in Complex with eOD-GT8
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-06-07
Release date:2019-11-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.202 Å)
Cite:Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization.
Cell Rep, 29, 2019
4WYY
DownloadVisualize
BU of 4wyy by Molmil
Crystal Structure of P. aeruginosa AmpC
Descriptor: Beta-lactamase, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Ferguson, A.D.
Deposit date:2014-11-18
Release date:2015-08-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
ACS Infect Dis, 1, 2015
4WZ4
DownloadVisualize
BU of 4wz4 by Molmil
Crystal structure of P. aeruginosa AmpC
Descriptor: Beta-lactamase, GLYCEROL, {(3R)-6-[(3-amino-1,2,4-thiadiazol-5-yl)oxy]-1-hydroxy-4,5-dimethyl-1,3-dihydro-2,1-benzoxaborol-3-yl}acetic acid
Authors:Ferguson, A.D.
Deposit date:2014-11-18
Release date:2015-08-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
ACS Infect Dis, 1, 2015
4WZ5
DownloadVisualize
BU of 4wz5 by Molmil
Crystal structure of P. aeruginosa OXA10
Descriptor: Beta-lactamase OXA-10, CARBON DIOXIDE, SULFATE ION, ...
Authors:Ferguson, A.D.
Deposit date:2014-11-18
Release date:2015-08-05
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
Acs Infect Dis., 1, 2015
6P20
DownloadVisualize
BU of 6p20 by Molmil
Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164
Descriptor: 1,2-ETHANEDIOL, Baseplate central spike complex protein gp5,PHIKZ164, Elaidic acid, ...
Authors:Buth, S.A, Shneider, M.M, Leiman, P.G.
Deposit date:2019-05-20
Release date:2020-05-27
Last modified:2025-07-23
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164
To Be Published
6OOU
DownloadVisualize
BU of 6oou by Molmil
Crystal structure of HIV-1 Protease NL4-3 L89V Mutant in complex with darunavir
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, NL4-3 PROTEASE, SULFATE ION
Authors:Henes, M, Kosovrasti, K, Lockbaum, G.J, Leidner, F, Nachum, G.S, Nalivaika, E.A, Bolon, D.N.A, KurtYilmaz, N, Schiffer, C.A, Whitfield, T.W.
Deposit date:2019-04-23
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.127 Å)
Cite:Molecular Determinants of Epistasis in HIV-1 Protease: Elucidating the Interdependence of L89V and L90M Mutations in Resistance.
Biochemistry, 58, 2019
4WRH
DownloadVisualize
BU of 4wrh by Molmil
AKR1C3 complexed with breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)amino)methyl)-6-methoxyphenoxy)acetamide
Descriptor: 1,2-ETHANEDIOL, 2-[4-(aminomethyl)-2-chloro-6-methoxyphenoxy]-N-tert-butylacetamide, 5-methyl-4H-1,2,4-triazole-3-thiol, ...
Authors:Squire, C.J, Flanagan, J.U, Yosaatmadja, Y.
Deposit date:2014-10-24
Release date:2014-11-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)amino)methyl)-6-methoxyphenoxy)acetamide trapped in active site of AKR1C3
To Be Published
5IQJ
DownloadVisualize
BU of 5iqj by Molmil
1.9 Angstrom Crystal Structure of Protein with Unknown Function from Vibrio cholerae.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Minasov, G, Wawrzak, Z, Stogios, P.J, Skarina, T, Seed, K.D, Yim, V, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-03-10
Release date:2016-03-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1.9 Angstrom Crystal Structure of Protein with Unknown Function from Vibrio cholerae.
To Be Published
6Y9B
DownloadVisualize
BU of 6y9b by Molmil
Cryo-EM structure of trimeric human STEAP1 bound to three Fab120.545 fragments
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, Fab120.545 heavy chain, Fab120.545 light chain, ...
Authors:Oosterheert, W, Gros, P.
Deposit date:2020-03-06
Release date:2020-05-20
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Cryo-electron microscopy structure and potential enzymatic function of human six-transmembrane epithelial antigen of the prostate 1 (STEAP1).
J.Biol.Chem., 295, 2020
6O3U
DownloadVisualize
BU of 6o3u by Molmil
Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with 06:0 PA
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate, GLYCEROL, PGZL1.H4K3 heavy chain, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2019-02-27
Release date:2019-12-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.105 Å)
Cite:An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Nat Commun, 10, 2019
6O42
DownloadVisualize
BU of 6o42 by Molmil
Crystal structure of the germline PGZL1 (PGZL1_gVmDmJ) Fab in complex with MPER peptide epitope.
Descriptor: GLYCEROL, MPER peptide, region 671-683 of HIV-1 gp41, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2019-02-27
Release date:2019-12-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Nat Commun, 10, 2019
6ONV
DownloadVisualize
BU of 6onv by Molmil
Crystal structure of HIV-1 LM/HT Clade A/E CRF01 gp120 core in complex with (S)-MCG-III-027-D05.
Descriptor: (3S)-N-(4-chloro-3-fluorophenyl)-1-(methylsulfonyl)piperidine-3-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Tolbert, W.D, Sherburn, R, Pazgier, M.
Deposit date:2019-04-22
Release date:2019-10-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.253 Å)
Cite:A New Family of Small-Molecule CD4-Mimetic Compounds Contacts Highly Conserved Aspartic Acid 368 of HIV-1 gp120 and Mediates Antibody-Dependent Cellular Cytotoxicity.
J.Virol., 93, 2019
6OUN
DownloadVisualize
BU of 6oun by Molmil
Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and (-)3TC-TP
Descriptor: DNA primer 20-mer, DNA template 27-mer, Lamivudine Triphosphate, ...
Authors:Bertoletti, N, Anderson, K.S.
Deposit date:2019-05-04
Release date:2019-07-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.656 Å)
Cite:Structural insights into the recognition of nucleoside reverse transcriptase inhibitors by HIV-1 reverse transcriptase: First crystal structures with reverse transcriptase and the active triphosphate forms of lamivudine and emtricitabine.
Protein Sci., 28, 2019
5IU0
DownloadVisualize
BU of 5iu0 by Molmil
Rubisco from Arabidopsis thaliana
Descriptor: 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Valegaard, K, Hasse, D, Gunn, L, Andersson, I.
Deposit date:2016-03-17
Release date:2017-07-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Structure of Rubisco from Arabidopsis thaliana in complex with 2-carboxyarabinitol-1,5-bisphosphate.
Acta Crystallogr D Struct Biol, 74, 2018
6YEI
DownloadVisualize
BU of 6yei by Molmil
Arabidopsis thaliana glutamate dehydrogenase isoform 1 in complex with NAD
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ...
Authors:Ruszkowski, M, Grzechowiak, M, Jaskolski, M.
Deposit date:2020-03-24
Release date:2020-05-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural Studies of Glutamate Dehydrogenase (Isoform 1) FromArabidopsis thaliana, an Important Enzyme at the Branch-Point Between Carbon and Nitrogen Metabolism.
Front Plant Sci, 11, 2020
6YSK
DownloadVisualize
BU of 6ysk by Molmil
1-phenylpyrroles and 1-enylpyrrolidines as inhibitors of Notum
Descriptor: (3~{S})-1-[4-chloranyl-3-(trifluoromethyl)phenyl]pyrrolidine-3-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhao, Y, Jones, E.Y, Fish, P.
Deposit date:2020-04-22
Release date:2020-09-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Screening of a Custom-Designed Acid Fragment Library Identifies 1-Phenylpyrroles and 1-Phenylpyrrolidines as Inhibitors of Notum Carboxylesterase Activity.
J.Med.Chem., 63, 2020
6YTD
DownloadVisualize
BU of 6ytd by Molmil
CLK1 V324A mutant bound with benzothiazole Tg003 (Cpd 2)
Descriptor: (1~{Z})-1-(3-ethyl-5-methoxy-1,3-benzothiazol-2-ylidene)propan-2-one, Dual specificity protein kinase CLK1
Authors:Schroeder, M, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-04-24
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity.
J.Med.Chem., 63, 2020

242500

数据于2025-10-01公开中

PDB statisticsPDBj update infoContact PDBjnumon