Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3RJF
DownloadVisualize
BU of 3rjf by Molmil
Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG at template position paired with non-hydrolyzable dATP analog (dApCPP)
Descriptor: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ...
Authors:Batra, V.K, Beard, W.A, Wilson, S.H.
Deposit date:2011-04-15
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion
Proc.Natl.Acad.Sci.USA, 109, 2012
4JOX
DownloadVisualize
BU of 4jox by Molmil
Crystal structure of cry34Ab1 protein at 2.15 A resolution
Descriptor: 13.6 kDa insecticidal crystal protein
Authors:Yang, C, Pflugrath, J.W, Kelker, M.S, Evan, S.L, Narva, K.E.
Deposit date:2013-03-19
Release date:2014-04-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and biophysical characterization of Cry34Ab1 and Cry35Ab1.
To be Published
4JTJ
DownloadVisualize
BU of 4jtj by Molmil
Crystal structure of R117K mutant of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, CHLORIDE ION, SODIUM ION
Authors:Allison, T.M, Cochrane, F.C, Jameson, G.B, Parker, E.J.
Deposit date:2013-03-23
Release date:2013-06-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Examining the Role of Intersubunit Contacts in Catalysis by 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthase.
Biochemistry, 52, 2013
4JTL
DownloadVisualize
BU of 4jtl by Molmil
Crystal structure of F139G mutant of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, CHLORIDE ION
Authors:Allison, T.M, Cochrane, F.C, Jameson, G.B, Parker, E.J.
Deposit date:2013-03-23
Release date:2013-06-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Examining the Role of Intersubunit Contacts in Catalysis by 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthase.
Biochemistry, 52, 2013
4C8G
DownloadVisualize
BU of 4c8g by Molmil
IspF (Burkholderia cenocepacia) CMP complex
Descriptor: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:O'Rourke, P.E.F, Kalinowska-Tluscik, J, Fyfe, P.K, Dawson, A, Hunter, W.N.
Deposit date:2013-10-01
Release date:2014-01-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Ispf from Plasmodium Falciparum and Burkholderia Cenocepacia: Comparisons Inform Antimicrobial Drug Target Assessment.
Bmc Struct.Biol., 14, 2014
4J4K
DownloadVisualize
BU of 4j4k by Molmil
Crystal structure of glucose isomerase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Xylose isomerase, ...
Authors:Kim, M.K, An, Y.J, Lee, S, Jeong, C.S, Cha, S.S.
Deposit date:2013-02-07
Release date:2014-04-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of glucose isomerase
To be Published
4F63
DownloadVisualize
BU of 4f63 by Molmil
Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 1
Descriptor: 1,2-ETHANEDIOL, 5-bromo-N~4~-(3-methyl-1H-pyrazol-5-yl)-N~2~-[2-(pyridin-3-yl)ethyl]pyrimidine-2,4-diamine, Fibroblast growth factor receptor 1
Authors:Norman, R.A, Breed, J, Ogg, D.
Deposit date:2012-05-14
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Protein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase.
J.Med.Chem., 55, 2012
4F64
DownloadVisualize
BU of 4f64 by Molmil
Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 6
Descriptor: 1,2-ETHANEDIOL, 5-bromo-N~4~-[3-(3-methoxypropyl)-1H-pyrazol-5-yl]-N~2~-[(3-methyl-1,2-oxazol-5-yl)methyl]pyrimidine-2,4-diamine, Fibroblast growth factor receptor 1, ...
Authors:Norman, R.A, Breed, J, Ogg, D.
Deposit date:2012-05-14
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Protein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase.
J.Med.Chem., 55, 2012
4FAZ
DownloadVisualize
BU of 4faz by Molmil
Kinetic and structural characterization of the 4-oxalocrotonate tautomerase isozymes from Methylibium petroleiphilum
Descriptor: 4-oxalocrotonate isomerase protein, SULFATE ION
Authors:Terrell, C.R, Hoffman, D.W, Whitman, C.P.
Deposit date:2012-05-22
Release date:2013-06-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural and kinetic characterization of two 4-oxalocrotonate tautomerases in Methylibium petroleiphilum strain PM1.
Arch.Biochem.Biophys., 537, 2013
3TRJ
DownloadVisualize
BU of 3trj by Molmil
Structure of a phosphoheptose isomerase from Francisella tularensis
Descriptor: Phosphoheptose isomerase
Authors:Cheung, J, Franklin, M.C, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J.
Deposit date:2011-09-09
Release date:2011-09-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction.
Plos One, 8, 2013
3TY2
DownloadVisualize
BU of 3ty2 by Molmil
Structure of a 5'-nucleotidase (surE) from Coxiella burnetii
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-nucleotidase surE
Authors:Cheung, J, Franklin, M.C, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J.
Deposit date:2011-09-23
Release date:2011-10-19
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.885 Å)
Cite:Structural genomics for drug design against the pathogen Coxiella burnetii.
Proteins, 83, 2015
3U79
DownloadVisualize
BU of 3u79 by Molmil
AL-103 Y32F Y96F
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, Amyloidogenic immunoglobulin light chain protein AL-103 Y32F Y96F, ...
Authors:DiCostanzo, A.C, Thompson, J.R, Ramirez-Alvarado, M.
Deposit date:2011-10-13
Release date:2012-07-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains
To be Published
3TIR
DownloadVisualize
BU of 3tir by Molmil
Pseudo-atomic model of the Rous Sarcoma Virus capsid hexamer
Descriptor: Rous Sarcoma Virus Capsid Protein p27
Authors:Bailey, G.B, Hyun, J.K, Mitra, A.K, Kingston, R.L.
Deposit date:2011-08-21
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:A structural model for the generation of continuous curvature on the surface of a retroviral capsid.
J.Mol.Biol., 417, 2012
4F0K
DownloadVisualize
BU of 4f0k by Molmil
UNACTIVATED RUBISCO with MAGNESIUM AND CARBON DIOXIDE BOUND
Descriptor: CARBON DIOXIDE, CHLORIDE ION, GLYCEROL, ...
Authors:Stec, B.
Deposit date:2012-05-04
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural mechanism of RuBisCO activation by carbamylation of the active site lysine.
Proc.Natl.Acad.Sci.USA, 109, 2012
4FXJ
DownloadVisualize
BU of 4fxj by Molmil
Structure of M2 pyruvate kinase in complex with phenylalanine
Descriptor: PHENYLALANINE, PHOSPHATE ION, Pyruvate kinase isozymes M1/M2
Authors:Walkinshaw, M.D, Morgan, H.P.
Deposit date:2012-07-03
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:M2 pyruvate kinase provides a mechanism for nutrient sensing and regulation of cell proliferation.
Proc.Natl.Acad.Sci.USA, 110, 2013
4FFJ
DownloadVisualize
BU of 4ffj by Molmil
The crystal structure of spDHBPs from S.pneumoniae
Descriptor: GLYCEROL, Riboflavin biosynthesis protein ribBA, SULFATE ION
Authors:Wang, D.
Deposit date:2012-06-01
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The crystal structure of SpDHBPs from S. pneumoniae
To be Published
3RJE
DownloadVisualize
BU of 3rje by Molmil
Ternary complex of DNA Polymerase Beta with a gapped DNA containing 8odG at template position
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
Authors:Batra, V.K, Beard, W.A, Wilson, S.H.
Deposit date:2011-04-15
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion
Proc.Natl.Acad.Sci.USA, 109, 2012
4GAJ
DownloadVisualize
BU of 4gaj by Molmil
Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 411-424)
Descriptor: Genome polyprotein, NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN, NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN
Authors:Potter, J.A, Owsianka, A, Taylor, G.L, Patel, A.H.
Deposit date:2012-07-25
Release date:2012-10-10
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Toward a Hepatitis C Virus Vaccine: the Structural Basis of Hepatitis C Virus Neutralization by AP33, a Broadly Neutralizing Antibody.
J.Virol., 86, 2012
3RGH
DownloadVisualize
BU of 3rgh by Molmil
Structure of filamin A immunoglobulin-like repeat 10 from Homo sapiens
Descriptor: ACETATE ION, Filamin-A
Authors:Page, R.C, Clark, J, Misra, S.
Deposit date:2011-04-08
Release date:2011-08-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structure of filamin A immunoglobulin-like repeat 10 from Homo sapiens.
Acta Crystallogr.,Sect.F, 67, 2011
4G3Q
DownloadVisualize
BU of 4g3q by Molmil
Crystal structure of GlmU from Mycobacterium tuberculosis Snapshot 4
Descriptor: Bifunctional protein GlmU, COBALT (II) ION, MAGNESIUM ION, ...
Authors:Jagtap, P.A, Verma, S.K, Prakash, B.
Deposit date:2012-07-15
Release date:2013-08-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Snapshots of Glmu from Mycobacterium Tuberculosis
To be Published
3R0Q
DownloadVisualize
BU of 3r0q by Molmil
A Uniquely Open Conformation Revealed in the Crystal Structure of Arabidopsis Thaliana Protein Arginine Methyltransferase 10
Descriptor: Probable protein arginine N-methyltransferase 4.2, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cheng, Y, Redinbo, M.R.
Deposit date:2011-03-08
Release date:2011-10-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of the plant epigenetic protein arginine methyltransferase 10.
J.Mol.Biol., 414, 2011
3RH6
DownloadVisualize
BU of 3rh6 by Molmil
DNA Polymerase Beta Mutant (Y271) with a dideoxy-terminated primer with an incoming ribonucleotide (rCTP)
Descriptor: (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DDG))-3'), (5'-D(P*GP*TP*CP*GP*G)-3'), 5'-D(*CP*CP*GP*AP*CP*GP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', ...
Authors:Cavanaugh, N.A, Beard, W.A, Batra, V.K, Perera, L, Pedersen, L.G, Wilson, S.H.
Deposit date:2011-04-11
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.048 Å)
Cite:Molecular insights into DNA polymerase deterrents for ribonucleotide insertion.
J.Biol.Chem., 286, 2011
3TGD
DownloadVisualize
BU of 3tgd by Molmil
Crystal structure of the human ubiquitin-conjugating enzyme (E2) UbcH5b
Descriptor: Ubiquitin-conjugating enzyme E2 D2
Authors:Page, R.C, Amick, J, Misra, S.
Deposit date:2011-08-17
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the human ubiquitin-conjugating enzyme (E2) UbcH5b
To be Published
3TFS
DownloadVisualize
BU of 3tfs by Molmil
Ternary complex structure of DNA polymerase beta with a gapped DNA substrate and a, b dAMP(CFH)PP in the active site: Stereoselective binding of (S) isomer
Descriptor: 2'-deoxy-5'-O-[(S)-{(S)-fluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]adenosine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ...
Authors:Chamberlain, B.T, Batra, V.K, Beard, W.A, Kadina, A.P, Shock, D.D, Kashemirov, B.A, McKenna, C.E, Goodman, M.F, Wilson, S.H.
Deposit date:2011-08-16
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stereospecific Formation of a Ternary Complex of (S)-alpha, beta-Fluoromethylene-dATP with DNA Pol beta.
Chembiochem, 13, 2012
4I0E
DownloadVisualize
BU of 4i0e by Molmil
Design and Synthesis of Thiophene Dihydroisoquinolins as Novel BACE-1 Inhibitors
Descriptor: 3-[2-bromo-4-(1H-pyrazol-4-yl)thiophen-3-yl]-N-(6-chloro-3,3-dimethyl-3,4-dihydroisoquinolin-1-yl)-L-alanine, Beta-secretase 1, ZINC ION
Authors:Yao, N, Brecht, E.
Deposit date:2012-11-16
Release date:2013-03-06
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design and synthesis of thiophene dihydroisoquinolines as novel BACE1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013

223790

数据于2024-08-14公开中

PDB statisticsPDBj update infoContact PDBjnumon