PDB: 62446 resultsInfo pagesStatus searchChemie searchBIRD

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4IAI	X-ray Structure of cAMP dependent protein kinase A in complex with high Ca2+ concentration, ADP and phosphorylated peptide pSP20 Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, CARBONATE ION, ... Authors: Gerlits, O, Kovalevsky, A. Deposit date: 2012-12-06 Release date: 2013-06-12 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Insights into the Phosphoryl Transfer Catalyzed by cAMP-Dependent Protein Kinase: An X-ray Crystallographic Study of Complexes with Various Metals and Peptide Substrate SP20. Biochemistry, 52, 2013
4IAD	Low temperature X-ray Structure OF cAMP dependent protein kinase A in complex with high Mg2+ concentration, ADP and phosphorylated peptide pSP20 Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Phosphorylated peptide pSP20, ... Authors: Gerlits, O, Kovalevsky, A. Deposit date: 2012-12-06 Release date: 2013-06-12 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Insights into the Phosphoryl Transfer Catalyzed by cAMP-Dependent Protein Kinase: An X-ray Crystallographic Study of Complexes with Various Metals and Peptide Substrate SP20. Biochemistry, 52, 2013
4IAZ	Structure of cAMP dependent protein kinase A in complex with high Ba2+ concentration, ADP and phosphorylated peptide pSP20 Descriptor: ADENOSINE-5'-DIPHOSPHATE, BARIUM ION, cAMP-dependent protein kinase catalytic subunit alpha, ... Authors: Gerlits, O, Kovalevsky, A. Deposit date: 2012-12-07 Release date: 2013-06-12 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Insights into the Phosphoryl Transfer Catalyzed by cAMP-Dependent Protein Kinase: An X-ray Crystallographic Study of Complexes with Various Metals and Peptide Substrate SP20. Biochemistry, 52, 2013
4IAK	Low temperature X-ray structure of cAMP dependent protein kinase A in complex with high Sr2+ concentration, ADP and phosphorylated peptide pSP20 Descriptor: ADENOSINE-5'-DIPHOSPHATE, CARBONATE ION, STRONTIUM ION, ... Authors: Gerlits, O, Kovalevsky, A. Deposit date: 2012-12-06 Release date: 2013-06-12 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Insights into the Phosphoryl Transfer Catalyzed by cAMP-Dependent Protein Kinase: An X-ray Crystallographic Study of Complexes with Various Metals and Peptide Substrate SP20. Biochemistry, 52, 2013
4IAY	Room temperature X-ray Structure of cAMP dependent protein kinase A in complex with high Sr2+ concentration, ADP and phosphorylated peptide pSP20 Descriptor: ADENOSINE-5'-DIPHOSPHATE, STRONTIUM ION, cAMP-dependent protein kinase catalytic subunit alpha, ... Authors: Gerlits, O, Kovalevsky, A. Deposit date: 2012-12-07 Release date: 2013-06-12 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Insights into the Phosphoryl Transfer Catalyzed by cAMP-Dependent Protein Kinase: An X-ray Crystallographic Study of Complexes with Various Metals and Peptide Substrate SP20. Biochemistry, 52, 2013
1W0H	Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP Descriptor: 3'-5' EXONUCLEASE ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION Authors: Cheng, Y, Patel, D. Deposit date: 2004-06-04 Release date: 2004-09-30 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp J.Mol.Biol., 343, 2004
2ZMF	Crystal structure of the C-terminal GAF domain of human phosphodiesterase 10A Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Authors: Handa, N, Kishishita, S, Mizohata, E, Omori, K, Kotera, J, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-04-17 Release date: 2008-04-29 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of the GAF-B Domain from Human Phosphodiesterase 10A Complexed with Its Ligand, cAMP J.Biol.Chem., 283, 2008
3PCO	crystal structure of E. coli phenylalanine-tRNA synthetase complexed with phenylalanine and AMP Descriptor: ADENOSINE MONOPHOSPHATE, PHENYLALANINE, Phenylalanyl-tRNA synthetase, ... Authors: Mermershtain, I, Finarov, I, Klipcan, L, Kessler, N, Rozenberg, H, Safro, M.G. Deposit date: 2010-10-21 Release date: 2011-03-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.02 Å) Cite: Idiosyncrasy and identity in the prokaryotic phe-system: crystal structure of E. coli phenylalanyl-tRNA synthetase complexed with phenylalanine and AMP. Protein Sci., 20, 2011
2Q8M	T-like Fructose-1,6-bisphosphatase from Escherichia coli with AMP, Glucose 6-phosphate, and Fructose 1,6-bisphosphate bound Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 6-O-phosphono-beta-D-glucopyranose, ADENOSINE MONOPHOSPHATE, ... Authors: Hines, J.K, Kruesel, C.E, Fromm, H.J, Honzatko, R.B. Deposit date: 2007-06-11 Release date: 2007-06-19 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure of Inhibited Fructose-1,6-bisphosphatase from Escherichia coli: DISTINCT ALLOSTERIC INHIBITION SITES FOR AMP AND GLUCOSE 6-PHOSPHATE AND THE CHARACTERIZATION OF A GLUCONEOGENIC SWITCH. J.Biol.Chem., 282, 2007
3NKV	Crystal structure of Rab1b covalently modified with AMP at Y77 Descriptor: ADENOSINE MONOPHOSPHATE, BARIUM ION, MAGNESIUM ION, ... Authors: Mueller, M.P, Peters, H, Blankenfeldt, W, Goody, R.S, Itzen, A. Deposit date: 2010-06-21 Release date: 2010-08-04 Last modified: 2025-05-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The Legionella effector protein DrrA AMPylates the membrane traffic regulator Rab1b. Science, 329, 2010
3QH8	Crystal structure of a beta-lactamase-like protein bound to AMP from brucella melitensis, long wavelength synchrotron data Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, Beta-lactamase-like, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2011-01-25 Release date: 2011-02-09 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of a Beta-Lactamase-Like Protein bound to AMP from Brucella Melitensis, long wavelength synchrotron data Acta Crystallogr.,Sect.F, 67, 2011
1DMA	DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED WITH NICOTINAMIDE AND AMP Descriptor: ADENOSINE MONOPHOSPHATE, EXOTOXIN A, NICOTINAMIDE Authors: Li, M, Dyda, F, Benhar, I, Pastan, I, Davies, D. Deposit date: 1995-04-28 Release date: 1995-09-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of Pseudomonas aeruginosa exotoxin domain III with nicotinamide and AMP: conformational differences with the intact exotoxin. Proc.Natl.Acad.Sci.USA, 92, 1995
4HE2	Crystal structure of human muscle fructose-1,6-bisphosphatase Q32R mutant complex with AMP Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Fructose-1,6-bisphosphatase isozyme 2, ... Authors: Shi, R, Zhu, D.W, Lin, S.X. Deposit date: 2012-10-03 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structures of Human Muscle Fructose-1,6-Bisphosphatase: Novel Quaternary States, Enhanced AMP Affinity, and Allosteric Signal Transmission Pathway. Plos One, 8, 2013
3OMF	Crystal structure of a histidine triad family protein from Entamoeba histolytica, bound to AMP Descriptor: ADENOSINE MONOPHOSPHATE, Putative histidine triad family protein, ZINC ION Authors: SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2010-08-26 Release date: 2010-09-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structures of a histidine triad family protein from Entamoeba histolytica bound to sulfate, AMP and GMP. Acta Crystallogr F Struct Biol Commun, 71, 2015
2YS6	Crystal structure of GAR synthetase from Geobacillus kaustophilus Descriptor: ADENOSINE MONOPHOSPHATE, GLYCINE, Phosphoribosylglycinamide synthetase Authors: Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-03 Release date: 2007-10-09 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria J.Biochem., 148, 2010
6IV5	Crystal structure of arabidopsis N6-mAMP deaminase MAPDA Descriptor: Adenosine/AMP deaminase family protein, PHOSPHATE ION, ZINC ION Authors: Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J. Deposit date: 2018-12-02 Release date: 2019-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.749 Å) Cite: Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing. Rna Biol., 16, 2019
6IJN	The D295N mutant of the N6-methyl-AMP deaminase from Arabidopsis thaliana complexed with N6m-AMP Descriptor: Adenosine/AMP deaminase family protein, N6-METHYLADENOSINE-5'-MONOPHOSPHATE Authors: Xie, W, Jia, Q. Deposit date: 2018-10-10 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase. Nucleic Acids Res., 47, 2019
6IJM	Apo structure of the N6-methyl-AMP Deaminase from Arabidopsis thaliana Descriptor: Adenosine/AMP deaminase family protein, ZINC ION Authors: Xie, W, Jia, Q. Deposit date: 2018-10-10 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.016 Å) Cite: Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase. Nucleic Acids Res., 47, 2019
3I5Y	Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP Descriptor: 5'-R(*UP*UP*UP*(5BU)P*UP*UP*UP*UP*UP*U)-3', ATP-dependent RNA helicase MSS116, MAGNESIUM ION, ... Authors: Del Campo, M, Lambowitz, A.M. Deposit date: 2009-07-06 Release date: 2009-09-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA Mol.Cell, 35, 2009
6EA8	Structure of VACV poxin in pre-reactive state with nonhydrolyzable 2'3' cGAMP Descriptor: (2S,5R,7R,8R,10R,12aR,14R,15R,15aS,16R)-7-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-15,16-dihydroxy-2,10-disulfanyloctahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione, O-[(1R,2R,3R)-5-{[(S)-{[(2R,3R,4R,5R)-2-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydro furan-3-yl]oxy}(sulfanyl)phosphoryl]oxy}-1-(6-amino-9H-purin-9-yl)-1,2-dihydroxypentan-3-yl] dihydrogen (R)-phosphorothioate, Protein B2 Authors: Eaglesham, J.B, Kranzusch, P.J. Deposit date: 2018-08-02 Release date: 2019-02-06 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Viral and metazoan poxins are cGAMP-specific nucleases that restrict cGAS-STING signalling. Nature, 566, 2019
9KRL	Cryo-EM structure of human ABCC4 (cAMP-bound) Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ATP-binding cassette sub-family C member 4 Authors: Li, M.H, Wen, X.P. Deposit date: 2024-11-28 Release date: 2025-09-24 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: Structural basis of human ABCC4 recognition of cAMP and ligand recognition flexibility. Cell Biosci, 15, 2025
7FTG	Crystal Structure of human cyclic GMP-AMP synthase in complex with cGAMP Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cGAMP Authors: Leibrock, L, Benz, J, Groebke-Zbinden, K, Rudolph, M.G. Deposit date: 2023-02-08 Release date: 2024-02-21 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Crystal Structure of a human cyclic GMP-AMP synthase complex To be published
7FTH	Crystal Structure of human cyclic GMP-AMP synthase in complex with cGAMP Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cGAMP Authors: Leibrock, L, Benz, J, Groebke-Zbinden, K, Rudolph, M.G. Deposit date: 2023-02-08 Release date: 2024-02-21 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal Structure of a human cyclic GMP-AMP synthase complex To be published
6EP0	Enterococcus faecalis FIC protein in complex with AMP and calcium ion. Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... Authors: Veyron, S, Cherfils, J. Deposit date: 2017-10-10 Release date: 2019-02-06 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.35 Å) Cite: A Ca2+-regulated deAMPylation switch in human and bacterial FIC proteins. Nat Commun, 10, 2019
7AE6	Crystal structure of di-AMPylated HEPN(R102A) toxin Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, HEPN toxin Authors: Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V. Deposit date: 2020-09-17 Release date: 2020-12-30 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.65 Å) Cite: HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation. Mol.Cell, 80, 2020

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