PDB: 243911 resultsInfo pagesStatus searchChemie searchBIRD

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9G09	Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri Descriptor: ADENOSINE-5'-TRIPHOSPHATE, E3 ubiquitin-protein ligase IpaH2.5, E3 ubiquitin-protein ligase RNF213, ... Authors: Naydenova, K, Randow, F. Deposit date: 2024-07-07 Release date: 2025-04-16 Last modified: 2025-10-01 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213. Nat.Struct.Mol.Biol., 32, 2025
1M3S	Crystal structure of YckF from Bacillus subtilis Descriptor: Hypothetical protein yckf Authors: Sanishvili, R, Wu, R, Kim, D.E, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2002-06-28 Release date: 2003-01-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of Bacillus subtilis YckF: structural and functional evolution. J.Struct.Biol., 148, 2004
1MQ6	Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa Descriptor: 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]-6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]-2-THIOPHENECARBOXAMIDE, CALCIUM ION, COAGULATION FACTOR X HEAVY CHAIN, ... Authors: Adler, M, Whitlow, M. Deposit date: 2002-09-13 Release date: 2003-01-28 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structures of Two Potent Nonamidine Inhibitors Bound to Factor Xa Biochemistry, 41, 2002
9G79	Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer Descriptor: Acetyl-coenzyme A synthetase Authors: Zheng, L.J, Du, Y, Bange, G. Deposit date: 2024-07-20 Release date: 2025-04-16 Method: ELECTRON MICROSCOPY (2.89 Å) Cite: Regulation of acetyl-CoA biosynthesis via an intertwined acetyl-CoA synthetase/acetyltransferase complex. Nat Commun, 16, 2025
7R62	Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Desmethyl ICI164,384 Derivative Descriptor: 11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide, Estrogen receptor Authors: Diennet, M, El Ezzy, M, Thiombane, K, Cotnoir-White, D, Poupart, J, Gao, Z, Mendoza Sanchez, R, Marinier, A, Gleason, J, Greene, G.L, Mader, S.C, Fanning, S.W. Deposit date: 2021-06-22 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Desmethyl ICI164,384 Derivative To Be Published
1M4H	Crystal Structure of Beta-secretase complexed with Inhibitor OM00-3 Descriptor: Inhibitor OM00-3, beta-Secretase Authors: Hong, L, Turner, R.T, Koelsch, G, Ghosh, A.K, Tang, J. Deposit date: 2002-07-02 Release date: 2002-08-28 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of Memapsin 2 (beta-Secretase) in Complex with Inhibitor OM00-3 Biochemistry, 41, 2002
1M55	Catalytic domain of the Adeno Associated Virus type 5 Rep protein Descriptor: CHLORIDE ION, Rep protein, ZINC ION Authors: Hickman, A.B, Ronning, D.R, Kotin, R.M, Dyda, F. Deposit date: 2002-07-08 Release date: 2002-08-28 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep. Mol.Cell, 10, 2002
1MKP	CRYSTAL STRUCTURE OF PYST1 (MKP3) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, PYST1 Authors: Stewart, A.E, Dowd, S, Keyse, S, Mcdonald, N.Q. Deposit date: 1998-07-11 Release date: 1999-07-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structure of the MAPK phosphatase Pyst1 catalytic domain and implications for regulated activation. Nat.Struct.Biol., 6, 1999
9GA2	MtUvrA2 dimer empty Descriptor: UvrABC system protein A, ZINC ION Authors: Genta, M, Capelli, R, Ferrara, G, Rizzi, M, Rossi, F, Jeruzalmi, D, Bolognesi, M, Chaves-Sanjuan, A, Miggiano, R. Deposit date: 2024-07-26 Release date: 2025-04-23 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (4.9 Å) Cite: Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair. Nat Commun, 16, 2025
1MJL	METHIONINE REPRESSOR MUTANT (Q44K) COMPLEX WITH THE COREPRESSOR SAM (S-ADENOSYL METHIONINE) FROM ESCHERICHIA COLI Descriptor: METHIONINE REPRESSOR PROTEIN METJ, S-ADENOSYLMETHIONINE Authors: Garvie, C.W, Phillips, S.E.V. Deposit date: 1998-01-26 Release date: 1998-04-29 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystallographic studies of the methionine repressor-operator complex and the oc31 42kDa repressor Thesis, University of Leeds, 1997
7RP9	X-ray crystal structure of OXA-24/40 V130D in complex with imipenem Descriptor: (2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid, BICARBONATE ION, Beta-lactamase, ... Authors: Powers, R.A, Mitchell, J.M, June, C.M. Deposit date: 2021-08-03 Release date: 2022-07-06 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40. J.Biol.Chem., 298, 2022
9G5D	Assembly intermediate of human mitochondrial ribosome small subunit (State C) Descriptor: 12S mitochondrial rRNA, 12S rRNA N4-methylcytidine (m4C) methyltransferase, 28S ribosomal protein S10, ... Authors: Finke, A.F, Heinrichs, M, Aibara, S, Richter-Dennerlein, R, Hillen, H.S. Deposit date: 2024-07-16 Release date: 2025-04-23 Last modified: 2025-04-30 Method: ELECTRON MICROSCOPY (3 Å) Cite: Coupling of ribosome biogenesis and translation initiation in human mitochondria. Nat Commun, 16, 2025
1M5C	X-RAY STRUCTURE OF THE GLUR2 LIGAND BINDING CORE (S1S2J) IN COMPLEX WITH Br-HIBO AT 1.65 A RESOLUTION Descriptor: (S)-2-AMINO-3-(4-BROMO-3-HYDROXY-ISOXAZOL-5-YL)PROPIONIC ACID, Glutamate receptor 2 Authors: Hogner, A, Kastrup, J.S, Jin, R, Liljefors, T, Mayer, M.L, Egebjerg, J, Larsen, I.K, Gouaux, E. Deposit date: 2002-07-09 Release date: 2002-09-18 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural Basis for AMPA Receptor Activation and Ligand Selectivity: Crystal Structures of Five Agonist Complexes with the GluR2 Ligand-binding Core J.Mol.Biol., 322, 2002
9G6J	The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA Descriptor: (11R,12S)- Mefloquine, 18S rRNA, 25S rRNA, ... Authors: Kolosova, O, Zgadzay, Y, Jenner, L.B, Guskov, A, Yusupov, M. Deposit date: 2024-07-18 Release date: 2025-04-23 Last modified: 2025-05-07 Method: ELECTRON MICROSCOPY (2.15 Å) Cite: Mechanism of read-through enhancement by aminoglycosides and mefloquine. Proc.Natl.Acad.Sci.USA, 122, 2025
1M5L	Structure of wild-type and mutant internal loops from the SL-1 domain of the HIV-1 packaging signal Descriptor: modified HIV-1 packaging signal stem-loop 1 RNA Authors: Gallego, J, Greatorex, J, Varani, G, Lever, A. Deposit date: 2002-07-09 Release date: 2002-09-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and stability of wild-type and mutant RNA internal loops from the SL-1 domain of the HIV-1 packaging signal J.Mol.Biol., 322, 2002
1M65	YCDX PROTEIN Descriptor: Hypothetical protein ycdX, SODIUM ION, SULFATE ION, ... Authors: Teplyakov, A, Obmolova, G, Khil, P.P, Camerini-Otero, R.D, Gilliland, G.L, Structure 2 Function Project (S2F) Deposit date: 2002-07-12 Release date: 2003-04-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
9GA4	MtUvrA2UvrB2 bound to damaged oligonucleotide Descriptor: DNA, UvrABC system protein A, UvrABC system protein B, ... Authors: Genta, M, Capelli, R, Ferrara, G, Rizzi, M, Rossi, F, Jeruzalmi, D, Bolognesi, M, Chaves-Sanjuan, A, Miggiano, R. Deposit date: 2024-07-26 Release date: 2025-04-23 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair. Nat Commun, 16, 2025
7R57	Escherichia coli type II Asparaginase N24S mutant in its apo form Descriptor: L-asparaginase 2 Authors: Maggi, M, Scotti, C. Deposit date: 2022-02-10 Release date: 2022-09-14 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural Aspects of E. coli Type II Asparaginase in Complex with Its Secondary Product L-Glutamate. Int J Mol Sci, 23, 2022
9GOS	CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Descriptor: Flagella Membrane Glycoprotein 1B Authors: Nievergelt, A.P, Hoepfner, L.M, Matrino, F, Scholz, M, Foster, H.E, Rodenfels, J, von Appen, A, Hippler, M, Pigino, G. Deposit date: 2024-09-06 Release date: 2025-05-07 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. To Be Published
1LUX	NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40) Descriptor: 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3' Authors: Stuart, J.W, Koshlap, K.M, Guenther, R.H, Agris, P.F. Deposit date: 2002-05-23 Release date: 2003-09-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe). J.Mol.Biol., 334, 2003
1LVA	Crystal structure of a C-terminal fragment of Moorella thermoacetica elongation factor SelB Descriptor: SULFATE ION, Selenocysteine-specific elongation factor, YTTRIUM ION Authors: Selmer, M, Su, X.-D. Deposit date: 2002-05-28 Release date: 2002-08-21 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB. EMBO J., 21, 2002
9GK1	SSX structure of human cytochrome P450 3A4 at room temperature Descriptor: Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE Authors: Glerup, J, Branden, G, Uwangue, O. Deposit date: 2024-08-23 Release date: 2025-05-07 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Microcrystallization and room-temperature serial crystallography structure of human cytochrome P450 3A4. Arch.Biochem.Biophys., 769, 2025
9GLH	Crystal Structure of UFC1 T106S Descriptor: SULFATE ION, Ubiquitin-fold modifier-conjugating enzyme 1 Authors: Kumar, M, Banerjee, S, Wiener, R. Deposit date: 2024-08-27 Release date: 2025-05-07 Method: X-RAY DIFFRACTION (1.115 Å) Cite: UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes. Nat Commun, 16, 2025
1LVJ	STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING Descriptor: 1-[10-(3-DIMETHYLAMINO-PROPYL)-10H-PHENOTHIAZIN-2-YL]-ETHANONE, HIV-1 Trans Activating Region RNA Authors: Du, Z, Lind, K.E, James, T.L. Deposit date: 2002-05-28 Release date: 2002-12-11 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening CHEM.BIOL., 9, 2002
7R8P	Open form of SAOUHSC_02373 in complex with ADP, Mg2+ and Na+ Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-grasp domain-containing protein, CHLORIDE ION, ... Authors: Pederick, J.L, Bruning, J.B. Deposit date: 2021-06-27 Release date: 2022-09-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Discovery of an ʟ-amino acid ligase implicated in Staphylococcal sulfur amino acid metabolism. J.Biol.Chem., 298, 2022

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