Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1BY2
DownloadVisualize
BU of 1by2 by Molmil
STRUCTURE OF M2BP SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAC-2 BINDING PROTEIN
Authors:Hohenester, E, Sasaki, T, Timpl, R.
Deposit date:1998-10-23
Release date:1999-05-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a scavenger receptor cysteine-rich domain sheds light on an ancient superfamily.
Nat.Struct.Biol., 6, 1999
3MI9
DownloadVisualize
BU of 3mi9 by Molmil
Crystal structure of HIV-1 Tat complexed with human P-TEFb
Descriptor: Cell division protein kinase 9, Cyclin-T1, Protein Tat, ...
Authors:Tahirov, T.H, Babayeva, N.D, Varzavand, K, Cooper, J.J, Sedore, S.C, Price, D.H.
Deposit date:2010-04-09
Release date:2010-06-09
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of HIV-1 Tat complexed with human P-TEFb.
Nature, 465, 2010
1JZD
DownloadVisualize
BU of 1jzd by Molmil
DsbC-DsbDalpha complex
Descriptor: thiol:disulfide interchange protein dsbc, thiol:disulfide interchange protein dsbd
Authors:Haebel, P.W, Goldstone, D, Katzen, F, Beckwith, J, Metcalf, P.
Deposit date:2001-09-15
Release date:2003-03-08
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Disulfide Bond Isomerase DsbC is Activated by an Immunoglobulin-fold Thiol Oxidoreductase: Crystal structure of the DsbC-DsbDalpha complex.
Embo J., 21, 2002
1F8M
DownloadVisualize
BU of 1f8m by Molmil
CRYSTAL STRUCTURE OF 3-BROMOPYRUVATE MODIFIED ISOCITRATE LYASE (ICL) FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor: ISOCITRATE LYASE, MAGNESIUM ION, PYRUVIC ACID
Authors:Sharma, V, Sharma, S, Hoener zu Bentrup, K, McKinney, J.D, Russell, D.G, Jacobs Jr, W.R, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2000-06-30
Release date:2000-12-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of isocitrate lyase, a persistence factor of Mycobacterium tuberculosis.
Nat.Struct.Biol., 7, 2000
5PZU
DownloadVisualize
BU of 5pzu by Molmil
Human liver fructose-1,6-bisphosphatase 1 (fructose 1,6-bisphosphate 1-phosphatase, E.C.3.1.3.11) complexed with the allosteric inhibitor [5-[2-amino-5-(2-methylpropyl)-1,3-thiazol-4-yl]furan-2-yl]phosphonic acid
Descriptor: Fructose-1,6-bisphosphatase 1, {5-[2-amino-5-(2-methylpropyl)-1,3-thiazol-4-yl]furan-2-yl}phosphonic acid
Authors:Ruf, A, Joseph, C, Alker, A, Banner, D, Tetaz, T, Benz, J, Kuhn, B, Rudolph, M.G, Yang, H, Shao, C, Burley, S.K.
Deposit date:2017-04-18
Release date:2019-01-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Human liver fructose-1,6-bisphosphatase 1 (fructose 1,6-bisphosphate 1-phosphatase, E.C.3.1.3.11) complexed with the allosteric inhibitor [5-[2-amino-5-(2-methylpropyl)-1,3-thiazol-4-yl]furan-2-yl]phosphonic acid
To be published
1W4N
DownloadVisualize
BU of 1w4n by Molmil
AGAO covalent complex with Tranylcypromine
Descriptor: COPPER (II) ION, GLYCEROL, PHENYLETHYLAMINE OXIDASE, ...
Authors:Duff, A.P, Trambaiolo, D.M, Langley, D.B, Juda, G.A, Shepard, E.M, Dooley, D.M, Freeman, H.C, Guss, J.M.
Deposit date:2004-07-27
Release date:2005-12-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Complexes of the Copper-Containing Amine Oxidase from Arthrobacter Globiformis with the Inhibitors Benzylhydrazine and Tranylcypromine.
Acta Crystallogr.,Sect.F, 64, 2008
6F58
DownloadVisualize
BU of 6f58 by Molmil
Crystal structure of human Brachyury (T) in complex with DNA
Descriptor: Brachyury protein, DNA (5'-D(*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP*AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*TP*T)-3'), SODIUM ION
Authors:Newman, J.A, Gavard, A.E, Krojer, T, Shrestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2017-12-01
Release date:2017-12-13
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (2.253 Å)
Cite:Structural insights into human brachyury DNA recognition and discovery of progressible binders for cancer therapy.
Nat Commun, 16, 2025
1JE5
DownloadVisualize
BU of 1je5 by Molmil
Crystal Structure of gp2.5, a Single-Stranded DNA Binding Protein Encoded by Bacteriophage T7
Descriptor: CALCIUM ION, HELIX-DESTABILIZING PROTEIN
Authors:Hollis, T, Stattel, J.M, Walther, D.S, Richardson, C.C, Ellenberger, T.E.
Deposit date:2001-06-15
Release date:2001-08-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7.
Proc.Natl.Acad.Sci.USA, 98, 2001
3MQY
DownloadVisualize
BU of 3mqy by Molmil
SgrAI with cleaved DNA and Magnesium bound
Descriptor: DNA (5'-D(*GP*AP*GP*TP*CP*CP*A)-3'), DNA (5'-D(P*CP*CP*GP*GP*TP*GP*GP*AP*CP*TP*C)-3'), MAGNESIUM ION, ...
Authors:Dunten, P.W, Horton, N.C, Little, E.J.
Deposit date:2010-04-28
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA.
Acta Crystallogr.,Sect.D, 67, 2011
6FB0
DownloadVisualize
BU of 6fb0 by Molmil
Crystal Structure of a Tailored I-CreI Homing Endonuclease Protein (3115 variant) in complex with its target DNA (Haemoglobin beta subunit gene) in the presence of Calcium
Descriptor: ACETATE ION, CALCIUM ION, DNA (5'-D(*TP*CP*AP*GP*AP*CP*TP*TP*CP*TP*CP*CP*AP*CP*AP*GP*GP*AP*GP*TP*CP*AP*GP*A)-3'), ...
Authors:Molina, R, Prieto, J.
Deposit date:2017-12-18
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Understanding the indirect DNA read-out specificity of I-CreI Meganuclease.
Sci Rep, 8, 2018
4JKM
DownloadVisualize
BU of 4jkm by Molmil
Crystal Structure of Clostridium perfringens beta-glucuronidase
Descriptor: Beta-glucuronidase, Maltose-binding periplasmic protein
Authors:Wallace, B.D, Redinbo, M.R.
Deposit date:2013-03-09
Release date:2014-09-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.263 Å)
Cite:Structure and Inhibition of Microbiome beta-Glucuronidases Essential to the Alleviation of Cancer Drug Toxicity.
Chem.Biol., 22, 2015
4BWR
DownloadVisualize
BU of 4bwr by Molmil
Crystal structure of c5321: a protective antigen present in uropathogenic Escherichia coli strains displaying an SLR fold
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Urosev, D, Ferrer-Navarro, M, Pastorello, I, Cartocci, E, Costenaro, L, Zhulenkovs, D, Marechal, J.-D, Leonchiks, A, Reverter, D, Serino, L, Soriani, M, Daura, X.
Deposit date:2013-07-04
Release date:2013-07-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Crystal Structure of C5321: A Protective Antigen Present in Uropathogenic Escherichia Coli Strains Displaying an Slr Fold.
Bmc Struct.Biol., 13, 2013
1FL0
DownloadVisualize
BU of 1fl0 by Molmil
CRYSTAL STRUCTURE OF THE EMAP2/RNA-BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX
Descriptor: ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II
Authors:Renault, L, Kerjan, P, Pasqualato, S, Menetrey, J, Robinson, J.-C, Kawaguchi, S, Vassylyev, D.G, Yokoyama, S, Mirande, M, Cherfils, J.
Deposit date:2000-08-11
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry.
EMBO J., 20, 2001
7D3U
DownloadVisualize
BU of 7d3u by Molmil
Structure of Mrp complex from Dietzia sp. DQ12-45-1b
Descriptor: Cation antiporter, DODECYL-BETA-D-MALTOSIDE, Monovalent Na+/H+ antiporter subunit A, ...
Authors:Li, B, Zhang, K.D, Wu, X.L, Zhang, X.C.
Deposit date:2020-09-21
Release date:2020-12-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the Dietzia Mrp complex reveals molecular mechanism of this giant bacterial sodium proton pump.
Proc.Natl.Acad.Sci.USA, 117, 2020
1BU6
DownloadVisualize
BU of 1bu6 by Molmil
CRYSTAL STRUCTURES OF ESCHERICHIA COLI GLYCEROL KINASE AND THE MUTANT A65T IN AN INACTIVE TETRAMER: CONFORMATIONAL CHANGES AND IMPLICATIONS FOR ALLOSTERIC REGULATION
Descriptor: GLYCEROL, PROTEIN (GLYCEROL KINASE), SULFATE ION
Authors:Feese, M.D, Faber, H.R, Bystrom, C.E, Pettigrew, D.W, Remington, S.J.
Deposit date:1998-08-30
Release date:1998-09-16
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Glycerol kinase from Escherichia coli and an Ala65-->Thr mutant: the crystal structures reveal conformational changes with implications for allosteric regulation.
Structure, 6, 1998
3QV6
DownloadVisualize
BU of 3qv6 by Molmil
Crystal structure of Leishmania mexicana pyruvate kinase(LmPYK)in complex with acid blue 80.
Descriptor: 3-({4-[(2,4-dimethyl-5-sulfophenyl)amino]-9,10-dioxo-9,10-dihydroanthracen-1-yl}amino)-2,4,6-trimethylbenzenesulfonic acid, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Morgan, H.P, Auld, D.S, McNae, I.W, Nowicki, M.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
Deposit date:2011-02-25
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The trypanocidal drug suramin and other trypan blue mimetics are inhibitors of pyruvate kinases and bind to the adenosine site.
J.Biol.Chem., 286, 2011
1W93
DownloadVisualize
BU of 1w93 by Molmil
Crystal Structure of Biotin Carboxylase Domain of Acetyl-Coenzyme A Carboxylase from Saccharomyces cerevisiae
Descriptor: ACETYL-COENZYME A CARBOXYLASE
Authors:Shen, Y, Volrath, S.L, Weatherly, S.C, Elich, T.D, Tong, L.
Deposit date:2004-10-05
Release date:2005-01-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Mechanism for the Potent Inhibition of Eukaryotic Acetyl-Coenzyme a Carboxylase by Soraphen A, a Macrocyclic Polyketide Natural Product
Mol.Cell, 16, 2004
5KXB
DownloadVisualize
BU of 5kxb by Molmil
Wisteria floribunda lectin in complex with GalNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, CALCIUM ION, MANGANESE (II) ION, ...
Authors:Evans, S.V, Haji-Ghassemi, O.
Deposit date:2016-07-20
Release date:2016-09-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Molecular Basis for Recognition of the Cancer Glycobiomarker, LacdiNAc (GalNAc[ beta 14]GlcNAc), by Wisteria floribunda Agglutinin.
J.Biol.Chem., 291, 2016
4NFW
DownloadVisualize
BU of 4nfw by Molmil
Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Descriptor: MANGANESE (II) ION, Putative Nudix hydrolase ymfB, SULFATE ION
Authors:Hong, M.K, Kim, J.K, Kang, L.W.
Deposit date:2013-11-01
Release date:2014-05-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Divalent metal ion-based catalytic mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Acta Crystallogr.,Sect.D, 70, 2014
4CIA
DownloadVisualize
BU of 4cia by Molmil
Crystal structure of cathepsin A, complexed with compound 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, LYSOSOMAL PROTECTIVE PROTEIN, ...
Authors:Schreuder, H.A, Liesum, A, Kroll, K, Boehnisch, B, Buning, C, Ruf, S, Buning, C, Sadowski, T.
Deposit date:2013-12-06
Release date:2014-02-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of cathepsin A, a novel target for the treatment of cardiovascular diseases.
Biochem. Biophys. Res. Commun., 445, 2014
1XO2
DownloadVisualize
BU of 1xo2 by Molmil
Crystal structure of a human cyclin-dependent kinase 6 complex with a flavonol inhibitor, fisetin
Descriptor: 3,7,3',4'-TETRAHYDROXYFLAVONE, Cell division protein kinase 6, Cyclin
Authors:Lu, H.S, Chang, D.J, Baratte, B, Meijer, L, Schulze-Gahmen, U.
Deposit date:2004-10-05
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of a Human Cyclin-Dependent Kinase 6 Complex with a Flavonol Inhibitor, Fisetin.
J.Med.Chem., 48, 2005
1OYX
DownloadVisualize
BU of 1oyx by Molmil
CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (SELENO-MET) AT 1.85 ANGSTROM
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lethal(3)malignant brain tumor-like protein, SULFATE ION
Authors:Wang, W.K, Tereshko, V, Boccuni, P, MacGrogan, D, Nimer, S.D, Patel, D.J.
Deposit date:2003-04-07
Release date:2003-08-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets.
Structure, 11, 2003
1BOY
DownloadVisualize
BU of 1boy by Molmil
EXTRACELLULAR REGION OF HUMAN TISSUE FACTOR
Descriptor: HUMAN TISSUE FACTOR
Authors:Boys, C.W.G, Tuddenham, E.G.D, Harlos, K.
Deposit date:1996-01-11
Release date:1996-06-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the extracellular region of human tissue factor.
Nature, 370, 1994
1DYR
DownloadVisualize
BU of 1dyr by Molmil
THE STRUCTURE OF PNEUMOCYSTIS CARINII DIHYDROFOLATE REDUCTASE TO 1.9 ANGSTROMS RESOLUTION
Descriptor: DIHYDROFOLATE REDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TRIMETHOPRIM
Authors:Champness, J.N, Achari, A, Ballantine, S.P, Bryant, P.K, Delves, C.J, Stammers, D.K.
Deposit date:1994-09-14
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The structure of Pneumocystis carinii dihydrofolate reductase to 1.9 A resolution.
Structure, 2, 1994
1BQL
DownloadVisualize
BU of 1bql by Molmil
STRUCTURE OF AN ANTI-HEL FAB FRAGMENT COMPLEXED WITH BOBWHITE QUAIL LYSOZYME
Descriptor: BOBWHITE QUAIL LYSOZYME, HYHEL-5 FAB (HEAVY CHAIN), HYHEL-5 FAB (LIGHT CHAIN)
Authors:Chacko, S, Davies, D.R.
Deposit date:1995-02-03
Release date:1995-04-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Refined structures of bobwhite quail lysozyme uncomplexed and complexed with the HyHEL-5 Fab fragment.
Proteins, 26, 1996

236963

数据于2025-06-04公开中

PDB statisticsPDBj update infoContact PDBjnumon