PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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7SVB	APE1 exonuclease substrate complex with 8oxoG opposite C Descriptor: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(8OG))-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ... Authors: Whitaker, A.W, Freudenthal, B.D. Deposit date: 2021-11-18 Release date: 2022-09-07 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Processing oxidatively damaged bases at DNA strand breaks by APE1. Nucleic Acids Res., 50, 2022
1XXH	ATPgS Bound E. Coli Clamp Loader Complex Descriptor: DNA polymerase III subunit gamma, DNA polymerase III, delta prime subunit, ... Authors: Kazmirski, S.L, Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. Deposit date: 2004-11-05 Release date: 2004-12-07 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex Proc.Natl.Acad.Sci.USA, 101, 2004
6IRQ	Complexed crystal structure of PaSSB with ssDNA dT25 at 1.91 angstrom resolution Descriptor: DNA (25-MER), Single-stranded DNA-binding protein Authors: Huang, Y.H, Huang, C.Y. Deposit date: 2018-11-14 Release date: 2019-12-11 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Characterization of an SSB-dT25 complex: structural insights into the S-shaped ssDNA binding conformation. Rsc Adv, 9, 2019
6IJU	The DNA binding domain of a response regulator ArlR from Staphylococcus aureus Descriptor: DNA-binding response regulator Authors: Hui, Y, Qing, W. Deposit date: 2018-10-12 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The DNA-binding properties and the structure of the DNA-binding domain of the response regulator ArlR from Staphylococcus aureus To Be Published
8FII	Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 1) Descriptor: DNA (5'-D(P*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*C)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ... Authors: Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. Deposit date: 2022-12-16 Release date: 2023-09-06 Method: X-RAY DIFFRACTION (2.94 Å) Cite: DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
8FIJ	Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 2) Descriptor: DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ... Authors: Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. Deposit date: 2022-12-16 Release date: 2023-09-06 Method: X-RAY DIFFRACTION (2.799 Å) Cite: DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
6SJE	Cryo-EM structure of the RecBCD Chi partially-recognised complex Descriptor: DNA fork substrate, RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... Authors: Cheng, K, Wilkinson, M, Wigley, D.B. Deposit date: 2019-08-13 Release date: 2020-01-01 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
3SR2	Crystal Structure of Human XLF-XRCC4 Complex Descriptor: DNA repair protein XRCC4, Non-homologous end-joining factor 1 Authors: Hammel, M, Classen, S, Tainer, J.A. Deposit date: 2011-07-06 Release date: 2011-07-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.9708 Å) Cite: XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair. J.Biol.Chem., 286, 2011
8J70	Native SAND domain of protein SP140 with DNA Descriptor: DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), Nuclear body protein SP140, selenourea Authors: Li, H.T, Liu, W.Q. Deposit date: 2023-04-26 Release date: 2024-05-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Molecular basis for Speckled protein SP140 bivalent recognition of histone H3 and DNA. To Be Published
6T7Y	Structure of PCNA bound to cPIP motif of DP2 from P. abyssi Descriptor: DNA polymerase sliding clamp, cPIP motif from the DP2 large subunit of PolD Authors: Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L. Deposit date: 2019-10-23 Release date: 2020-03-04 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA. Nat Commun, 11, 2020
6T2V	Cryo-EM structure of the RecBCD in complex with Chi-plus2 substrate Descriptor: DNA (Chi-plus2), RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... Authors: Cheng, K, Wilkinson, M, Wigley, D.B. Deposit date: 2019-10-09 Release date: 2020-01-01 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
6T7X	Crystal structure of PCNA from P. abyssi Descriptor: DNA polymerase sliding clamp Authors: Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L. Deposit date: 2019-10-23 Release date: 2020-03-04 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA. Nat Commun, 11, 2020
6T2U	Cryo-EM structure of the RecBCD in complex with Chi-minus2 substrate Descriptor: DNA (Chi-minus2), RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... Authors: Cheng, K, Wilkinson, M, Wigley, D.B. Deposit date: 2019-10-09 Release date: 2020-01-01 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
2VE8	Xray structure of FtsK gamma domain (P. aeruginosa) Descriptor: DNA TRANSLOCASE FTSK Authors: Lowe, J, Allen, M.A, Sherratt, D.J. Deposit date: 2007-10-17 Release date: 2008-09-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Molecular Mechanism of Sequence-Directed DNA Loading and Translocation by Ftsk. Mol.Cell, 31, 2008
5FF8	TDG enzyme-product complex Descriptor: DNA, G/T mismatch-specific thymine DNA glycosylase Authors: Pozharski, E, Malik, S.S, Drohat, A.C. Deposit date: 2015-12-18 Release date: 2016-09-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues. Nucleic Acids Res., 44, 2016
7RQT	THE B-DNA DODECAMER With HIGH RESOLUTION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Chen, C, Huang, Z. Deposit date: 2021-08-08 Release date: 2022-08-17 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.26 Å) Cite: 2'-beta-Selenium Atom on Thymidine to Control beta-Form DNA Conformation and Large Crystal Formation Cryst.Growth Des., 2022
5LKQ	Protease domain of RadA Descriptor: DNA repair protein RadA Authors: Rapisarda, C, Fronzes, R. Deposit date: 2016-07-22 Release date: 2017-06-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.498 Å) Cite: Bacterial RadA is a DnaB-type helicase interacting with RecA to promote bidirectional D-loop extension. Nat Commun, 8, 2017
327D	CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC) Descriptor: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') Authors: Tippin, D.B, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1997-03-17 Release date: 1997-05-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Methylation of the Z-DNA decamer d(GC)5 potentiates the formation of A-DNA: crystal structure of d(Gm5CGm5CGCGCGC). J.Mol.Biol., 270, 1997
7Z13	S. cerevisiae CMGE dimer nucleating origin DNA melting Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... Authors: Lewis, J.S, Sousa, J.S, Costa, A. Deposit date: 2022-02-24 Release date: 2022-06-15 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Mechanism of replication origin melting nucleated by CMG helicase assembly. Nature, 606, 2022
6B1R	Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix Descriptor: DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(1WA))-3'), DNA (5'-D(P*(IGU)P*(IGU)P*(IGU)P*AP*TP*AP*AP*G)-3'), Reverse transcriptase Authors: Singh, I, Georgiadis, M.M. Deposit date: 2017-09-18 Release date: 2018-09-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.69 Å) Cite: "Skinny" and "Fat" DNA: Two New Double Helices. J. Am. Chem. Soc., 140, 2018
6B1Q	Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix Descriptor: DNA (5'-D(*CP*TP*TP*AP*TP*(CJ1)P*(CJ1)P*(CJ1))-3'), DNA (5'-D(P*(1AP)P*(1AP)P*(1AP)P*AP*TP*AP*AP*G)-3'), Reverse transcriptase Authors: Singh, I, Georgiadis, M.M. Deposit date: 2017-09-18 Release date: 2018-09-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.9 Å) Cite: "Skinny" and "Fat" DNA: Two New Double Helices. J. Am. Chem. Soc., 140, 2018
5HF7	TDG enzyme-substrate complex Descriptor: DNA (28-MER), G/T mismatch-specific thymine DNA glycosylase Authors: Pozharski, E, Malik, S.S, Drohat, A.C. Deposit date: 2016-01-06 Release date: 2016-09-28 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues. Nucleic Acids Res., 44, 2016
6TUR	human XPG, Apo1 form Descriptor: DNA repair protein complementing XP-G cells,DNA repair protein complementing XP-G cells Authors: Ruiz, F.M, Fernandez-Tornero, C. Deposit date: 2020-01-08 Release date: 2020-09-16 Last modified: 2020-10-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair. Nucleic Acids Res., 48, 2020
2R6C	Crystal Form BH2 Descriptor: DnaG Primase, Helicase Binding Domain, Replicative helicase Authors: Bailey, S, Eliason, W.K, Steitz, T.A. Deposit date: 2007-09-05 Release date: 2008-06-10 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (4 Å) Cite: Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science, 318, 2007
2R6A	Crystal Form BH1 Descriptor: DnaG Primase, Helicase Binding Domain, Replicative helicase, ... Authors: Bailey, S, Eliason, W.K, Steitz, T.A. Deposit date: 2007-09-05 Release date: 2007-11-06 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science, 318, 2007

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