PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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2N3F	Solution structure of both dsRBDs of DRB4 along with linker (viz. DRB4(1-153)) Descriptor: Double-stranded RNA-binding protein 4 Authors: Deshmukh, M, Chiliveri, S. Deposit date: 2015-05-29 Release date: 2016-09-07 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway. Nucleic Acids Res., 45, 2017
1YRM	Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatch Descriptor: DNA/RNA (5'-R(*GP*CP*AP*GP*A)-D(P*(A5M))-R(P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'), STRONTIUM ION Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-02-04 Release date: 2005-10-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
1Z79	Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) Descriptor: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-03-24 Release date: 2005-10-18 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
2A64	Crystal Structure of Bacterial Ribonuclease P RNA Descriptor: ribonuclease P RNA Authors: Kazantsev, A.V, Krivenko, A.A, Harrington, D.J, Holbrook, S.R, Adams, P.D, Pace, N.R. Deposit date: 2005-07-01 Release date: 2005-09-20 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Crystal structure of a bacterial ribonuclease P RNA. Proc.Natl.Acad.Sci.Usa, 102, 2005
1YZD	Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair Descriptor: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*GP*UP*CP*UP*GP*C)-3' Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-02-28 Release date: 2005-10-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
1VFG	Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase Authors: Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-04-13 Release date: 2004-08-10 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis for template-independent RNA polymerization. Nature, 430, 2004
7EI5	GNRA tetraloop receptor motif composed of RNA and DNA Descriptor: COBALT (II) ION, DNA/RNA (35-MER), STRONTIUM ION Authors: Kondo, J, Hayasaka, A. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: RNA GNRA tetraloop and tetraloop receptor motifs To Be Published
7EI6	GNRA tetraloop receptor motif composed of RNA and DNA Descriptor: DNA/RNA (35-MER), IRIDIUM (III) ION Authors: Kondo, J, Hayasaka, A. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: RNA GNRA tetraloop and tetraloop receptor motifs To Be Published
1L1W	NMR structure of a SRP19 binding domain in human SRP RNA Descriptor: SRP19 binding domain of SRP RNA Authors: Sakamoto, T, Morita, S, Tabata, K, Nakamura, K, Kawai, G. Deposit date: 2002-02-20 Release date: 2002-05-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a SRP19 binding domain in human SRP RNA. J.Biochem.(Tokyo), 132, 2002
2VXG	Crystal structure of the conserved C-terminal region of Ge-1 Descriptor: CG6181-PA, ISOFORM A Authors: Jinek, M, Eulalio, A, Lingel, A, Helms, S, Conti, E, Izaurralde, E. Deposit date: 2008-07-04 Release date: 2008-09-09 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The C-Terminal Region of Ge-1 Presents Conserved Structural Features Required for P-Body Localization. RNA, 14, 2008
2QH4	Solution structure of the U85 C/D-H/ACA scaRNA 5' terminal hairpin loop Descriptor: Human U85 C/D-H/ACA scaRNA Authors: Feigon, J, Theimer, C.A, Chim, N, Breece, K.E. Deposit date: 2007-06-29 Release date: 2007-09-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural and functional characterization of human telomerase RNA processing and cajal body localization signals. Mol.Cell, 27, 2007
7KGA	Crystal structure of a mosquito-borne flavivirus dumbbell RNA Descriptor: IRIDIUM HEXAMMINE ION, RNA (90-MER) Authors: Akiyama, B.M, Graham, M.E, O'Donoghue, Z, Beckham, J.D, Kieft, J.S. Deposit date: 2020-10-16 Release date: 2021-06-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Res., 49, 2021
3ZC4	The structure of Csa5 from Sulfolobus solfataricus. Descriptor: DI(HYDROXYETHYL)ETHER, SSO1398 Authors: Reeks, J, Anderson, L, White, M.F, Naismith, J.H. Deposit date: 2012-11-15 Release date: 2013-02-20 Last modified: 2013-07-31 Method: X-RAY DIFFRACTION (2.72 Å) Cite: Structure of the Archaeal Cascade Subunit Csa5: Relating the Small Subunits of Crispr Effector Complexes. RNA Biol., 10, 2013
3O8C	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV Descriptor: HCV NS3 protease/helicase, RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3'), SULFATE ION, ... Authors: Appleby, T.C, Somoza, J.R. Deposit date: 2010-08-02 Release date: 2011-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV. J.Mol.Biol., 405, 2011
1SI2	Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang Descriptor: 5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3', Eukaryotic translation initiation factor 2C 1 Authors: Ye, K, Ma, J.B, Patel, D. Deposit date: 2004-02-26 Release date: 2004-05-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature, 429, 2004
8A0L	Tubulin-CW1-complex Descriptor: (3~{S},4~{R},8~{S},10~{S},12~{S},14~{S})-14-[(~{Z},4~{R})-4-(hydroxymethyl)hex-2-en-2-yl]-4,12-dimethoxy-9,9-dimethyl-3,8,10-tris(oxidanyl)-1-oxacyclotetradecan-2-one, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Prota, A.E, Diaz, J.F, Steinmetz, M.O, Oliva, M.A. Deposit date: 2022-05-28 Release date: 2022-12-14 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.9981 Å) Cite: Chemical modulation of microtubule structure through the laulimalide/peloruside site. Structure, 31, 2023
2B7G	Structure of the Smaug Recognition RNA Element Descriptor: 5'-R(*GP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*C)-3' Authors: Johnson, P.E, Donaldson, L.W. Deposit date: 2005-10-04 Release date: 2006-01-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: RNA recognition by the Vts1p SAM domain Nat.Struct.Mol.Biol., 13, 2006
3O8R	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, HCV NS3 protease/helicase, ... Authors: Appleby, T.C, Somoza, J.R. Deposit date: 2010-08-03 Release date: 2011-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.304 Å) Cite: Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV. J.Mol.Biol., 405, 2011
1XSU	Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine. Descriptor: COBALT HEXAMMINE(III), RNA (27-MER) Authors: Schmitz, M. Deposit date: 2004-10-20 Release date: 2004-12-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
3P59	First Crystal Structure of a RNA Nanosquare Descriptor: COBALT HEXAMMINE(III), MAGNESIUM ION, RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3'), ... Authors: Dibrov, S, Hermann, T, McLean, J, Parsons, J. Deposit date: 2010-10-08 Release date: 2011-04-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.1793 Å) Cite: Self-assembling RNA square. Proc.Natl.Acad.Sci.USA, 108, 2011
1SI3	Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex Descriptor: 5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3', Eukaryotic translation initiation factor 2C 1 Authors: Ye, K, Ma, J.B, Patel, D. Deposit date: 2004-02-27 Release date: 2004-05-25 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature, 429, 2004
2GRW	Solution structure of the poliovirus 3'-UTR Y-stem Descriptor: 5'-GGACCUCUCGAAAGAGAUGUCC-3' Authors: Heus, H.A, Zoll, J, Tessari, M, van Kuppeveld, F.J.M, Melchers, W.J.G. Deposit date: 2006-04-25 Release date: 2007-03-06 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Breaking pseudo-twofold symmetry in the poliovirus 3'-UTR Y-stem by restoring Watson-Crick base pairs. Rna, 13, 2007
1XST	Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine. Descriptor: COBALT HEXAMMINE(III), RNA (27-MER) Authors: Schmitz, M. Deposit date: 2004-10-20 Release date: 2004-12-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
1M5V	Transition State Stabilization by a Catalytic RNA Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, RNA HAIRPIN RIBOZYME, ... Authors: Rupert, P.B, Massey, A.P, Sigurdsson, S.T, Ferre-D'Amare, A.R. Deposit date: 2002-07-09 Release date: 2002-10-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Transition state stabilization by a catalytic RNA Science, 298, 2002
1M5O	Transition State Stabilization by a Catalytic RNA Descriptor: CALCIUM ION, RNA SUBSTRATE, RNA HAIRPIN RIBOZYME, ... Authors: Rupert, P.B, Massey, A.P, Sigurdsson, S.T, Ferre-D'Amare, A.R. Deposit date: 2002-07-09 Release date: 2002-10-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Transition state stabilization by a catalytic RNA Science, 298, 2002

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