PDB: 5653 resultsInfo pagesStatus searchChemie searchBIRD

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1W26	Trigger Factor in Complex with the Ribosome forms a Molecular Cradle for Nascent Proteins Descriptor: TRIGGER FACTOR Authors: Ferbitz, L, Maier, T, Patzelt, H, Bukau, B, Deuerling, E, Ban, N. Deposit date: 2004-06-28 Release date: 2004-09-02 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins Nature, 431, 2004
1D7H	FKBP COMPLEXED WITH DMSO Descriptor: AMMONIUM ION, DIMETHYL SULFOXIDE, PROTEIN (FK506-BINDING PROTEIN), ... Authors: Burkhard, P, Taylor, P, Walkinshaw, M.D. Deposit date: 1999-10-18 Release date: 1999-10-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: X-ray structures of small ligand-FKBP complexes provide an estimate for hydrophobic interaction energies. J.Mol.Biol., 295, 2000
1CG0	STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH HADACIDIN, GDP, 6-PHOSPHORYL-IMP, AND MG2+ Descriptor: 6-O-PHOSPHORYL INOSINE MONOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, HADACIDIN, ... Authors: Choe, J.Y, Poland, B.W, Fromm, H, Honzatko, R. Deposit date: 1999-03-26 Release date: 1999-06-17 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanistic implications from crystalline complexes of wild-type and mutant adenylosuccinate synthetases from Escherichia coli. Biochemistry, 38, 1999
1VFG	Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase Authors: Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-04-13 Release date: 2004-08-10 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis for template-independent RNA polymerization. Nature, 430, 2004
1ECF	ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE Descriptor: GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) Authors: Krahn, J.M. Deposit date: 1996-04-23 Release date: 1996-11-08 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of glutamine phosphoribosylpyrophosphate amidotransferase from Escherichia coli. Protein Sci., 7, 1998
1EEP	2.4 A RESOLUTION CRYSTAL STRUCTURE OF BORRELIA BURGDORFERI INOSINE 5'-MONPHOSPHATE DEHYDROGENASE IN COMPLEX WITH A SULFATE ION Descriptor: INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE, SULFATE ION Authors: McMillan, F.M, Cahoon, M, White, A, Hedstrom, L, Petsko, G.A, Ringe, D. Deposit date: 2000-02-01 Release date: 2000-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure at 2.4 A resolution of Borrelia burgdorferi inosine 5'-monophosphate dehydrogenase: evidence of a substrate-induced hinged-lid motion by loop 6. Biochemistry, 39, 2000
1E6G	A-SPECTRIN SH3 DOMAIN A11V, V23L, M25I, V53I, V58L MUTANT Descriptor: SPECTRIN ALPHA CHAIN, SULFATE ION Authors: Vega, M.C, Serrano, L. Deposit date: 2000-08-15 Release date: 2002-05-23 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Conformational Strain in the Hydrophobic Core and its Implications for Protein Folding and Design Nat.Struct.Biol., 9, 2002
1NHT	ENTRAPMENT OF 6-THIOPHOSPHORYL-IMP IN THE ACTIVE SITE OF CRYSTALLINE ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI DATA COLLECTED AT 100K Descriptor: 2-DEAZO-6-THIOPHOSPHATE GUANOSINE-5'-MONOPHOSPHATE, ADENYLOSUCCINATE SYNTHETASE, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Poland, B.W, Bruns, C.A, Fromm, H.J, Honzatko, R.B. Deposit date: 1997-01-12 Release date: 1997-10-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Entrapment of 6-thiophosphoryl-IMP in the active site of crystalline adenylosuccinate synthetase from Escherichia coli. J.Biol.Chem., 272, 1997
2LWT	NMR solution structure of PawS Derived Peptide 5 (PDP-5) Descriptor: PawS Derived Peptide 5 (PDP-5) Authors: Elliott, A.G, Mylne, J.S, Rosengren, K. Deposit date: 2012-08-06 Release date: 2013-08-21 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Evolutionary origins of a bioactive peptide buried within Preproalbumin. Plant Cell, 26, 2014
2M0X	Solution structure of U14Ub1, an engineered ubiquitin variant with increased affinity for USP14 Descriptor: engineered ubiquitin variant Authors: Phillips, A.H, Fairbrother, W.J, Corn, J.E. Deposit date: 2012-11-08 Release date: 2013-06-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Conformational dynamics control ubiquitin-deubiquitinase interactions and influence in vivo signaling. Proc.Natl.Acad.Sci.USA, 110, 2013
1NH7	ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE) FROM MYCOBACTERIUM TUBERCULOSIS Descriptor: ATP Phosphoribosyltransferase, MAGNESIUM ION, SULFATE ION Authors: Cho, Y, Sharma, V, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC) Deposit date: 2002-12-18 Release date: 2003-02-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure of ATP Phosphoribosyltransferase from Mycobacterium Tuberculosis J.Biol.Chem., 278, 2003
7SFS	In situ cryo-EM structure of bacteriophage Sf6 portal:gp7 complex at 2.7A resolution Descriptor: Gene 3 protein, Gene 7 protein Authors: Li, F, Cingolani, G, Hou, C. Deposit date: 2021-10-04 Release date: 2022-11-09 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine. Sci Adv, 8, 2022
7SG7	In situ cryo-EM structure of bacteriophage Sf6 gp8:gp14N complex at 2.8 A resolution Descriptor: Gene 14 protein, Gene 8 protein Authors: Li, F, Cingolani, G, Hou, C. Deposit date: 2021-10-05 Release date: 2022-11-09 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine. Sci Adv, 8, 2022
1N7T	ERBIN PDZ domain bound to a phage-derived peptide Descriptor: 99-mer peptide of densin-180-like protein, phage-derived peptide Authors: Skelton, N.J, Koehler, M.F.T, Zobel, K, Wong, W.L, Yeh, S, Pisabarro, M.T, Yin, J.P, Lasky, L.A, Sidhu, S.S. Deposit date: 2002-11-16 Release date: 2003-01-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain. J.Biol.Chem., 278, 2003
1IXQ	Enzyme-Phosphate2 Complex of Pyridoxine 5'-Phosphate synthase Descriptor: PHOSPHATE ION, Pyridoxine 5'-phosphate Synthase Authors: Garrido-Franco, M, Laber, B, Huber, R, Clausen, T. Deposit date: 2002-06-28 Release date: 2003-02-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Enzyme-ligand complexes of pyridoxine 5'-phosphate synthase: implications for substrate binding and catalysis J.MOL.BIOL., 321, 2002
4E2V	tRNA-guanine transglycosylase Y106F, C158V mutant in complex with preQ1 Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, GLYCEROL, Queuine tRNA-ribosyltransferase, ... Authors: Schmidt, I, Reuter, K, Klebe, G, Heine, A, Tidten, N. Deposit date: 2012-03-09 Release date: 2013-03-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor. Plos One, 8, 2013
2M89	Solution structure of the Aha1 dimer from Colwellia psychrerythraea Descriptor: Aha1 domain protein Authors: Rossi, P, Sgourakis, N.G, Shi, L, Liu, G, Barbieri, C.M, Lee, H, Grant, T.D, Luft, J.R, Xiao, R, Acton, T.B, Montelione, G.T, Snell, E.H, Baker, D, Lange, O.A, Northeast Structural Genomics Consortium (NESG) Deposit date: 2013-05-09 Release date: 2013-09-04 Last modified: 2024-05-01 Method: SOLUTION NMR, SOLUTION SCATTERING Cite: A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta. Proteins, 83, 2015
1NX6	Crystal Structure of Aspartate Semialdehyde Dehydrogenase from Haemophilus influenzae as a Tetrahedral Hemithiocetal Reaction intermediate with Phosphate at 2.15 A Descriptor: Aspartate-Semialdehyde Dehydrogenase, PHOSPHATE ION Authors: Blanco, J, Moore, R.A, Viola, R.E. Deposit date: 2003-02-09 Release date: 2003-11-04 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Capture of an Intermediate in the Catalytic Cycle of L-Aspartate-beta-Semialdehyde Dehydrogenase Proc.Natl.Acad.Sci.USA, 100, 2003
1J46	3D Solution NMR Structure of the Wild Type HMG-BOX Domain of the Human Male Sex Determining Factor Sry Complexed to DNA Descriptor: 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3', 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3', SEX-DETERMINING REGION Y PROTEIN Authors: Clore, G.M, Murphy, E.C. Deposit date: 2001-07-23 Release date: 2001-10-03 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation. J.Mol.Biol., 312, 2001
1J4R	FK506 BINDING PROTEIN COMPLEXED WITH FKB-001 Descriptor: 1-[2,2-DIFLUORO-2-(3,4,5-TRIMETHOXY-PHENYL)-ACETYL]-PIPERIDINE-2-CARBOXYLIC ACID 4-PHENYL-1-(3-PYRIDIN-3-YL-PROPYL)-BUTYL ESTER, FK506-BINDING PROTEIN, GLYCEROL, ... Authors: Sheriff, S. Deposit date: 2001-10-29 Release date: 2001-12-19 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: 2-Aryl-2,2-difluoroacetamide FKBP12 ligands: synthesis and X-ray structural studies. Org.Lett., 3, 2001
4EAN	1.75A resolution structure of indole bound beta-glycosidase (W33G) from sulfolobus solfataricus Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-galactosidase, CHLORIDE ION, ... Authors: Lovell, S, Battaile, K.P, Deckert, K, Brunner, L.C, Budiardjo, S.J, Karanicolas, J. Deposit date: 2012-03-22 Release date: 2012-06-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Designing allosteric control into enzymes by chemical rescue of structure. J.Am.Chem.Soc., 134, 2012
1IMW	Peptide Antagonist of IGFBP-1 Descriptor: IGFBP-1 antagonist Authors: Lowman, H.B, Chen, Y.M, Skelton, N.J, Mortensen, D.L, Tomlinson, E.E, Sadick, M.D, Robinson, I.C, Clark, R.G. Deposit date: 2001-05-11 Release date: 2001-05-30 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Structure-function analysis of a phage display-derived peptide that binds to insulin-like growth factor binding protein 1. Biochemistry, 40, 2001
1IWE	IMP Complex of the Recombinant Mouse-Muscle Adenylosuccinate Synthetase Descriptor: ACETATE ION, Adenylosuccinate Synthetase, INOSINIC ACID, ... Authors: Iancu, C.V, Borza, T, Fromm, H.J, Honzatko, R.B. Deposit date: 2002-05-04 Release date: 2002-08-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: IMP, GTP, and 6-phosphoryl-IMP complexes of recombinant mouse muscle adenylosuccinate synthetase. J.Biol.Chem., 277, 2002
2M07	NMR structure of OmpX in DPC micelles Descriptor: Outer membrane protein X Authors: Hagn, F.X, Etzkorn, M, Raschle, T, Wagner, G, Membrane Protein Structures by Solution NMR (MPSbyNMR) Deposit date: 2012-10-21 Release date: 2012-12-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins. J.Am.Chem.Soc., 135, 2013
2ZGS	Crystal structure of Agrocybe aegerita lectin AAL mutant L47A Descriptor: Anti-tumor lectin Authors: Li, D.F, Yang, N, Wang, D.C. Deposit date: 2008-01-23 Release date: 2009-01-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for the tumor cell apoptosis-inducing activity of an antitumor lectin from the edible mushroom Agrocybe aegerita J.Mol.Biol., 387, 2009

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