PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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8J6V	Structure of yeast Arginyl-tRNA-protein transferase 1 Descriptor: arginyltransferase Authors: Yashiro, Y, Tomita, K. Deposit date: 2023-04-26 Release date: 2023-06-07 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structure of Arginyl-tRNA-protein transferase 1 To Be Published
2ZKO	Structural basis for dsRNA recognition by NS1 protein of human influenza virus A Descriptor: GLYCEROL, Non-structural protein 1, RNA (5'-R(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3') Authors: Yuan, Y.A. Deposit date: 2008-03-26 Release date: 2008-10-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis for dsRNA recognition by NS1 protein of influenza A virus Cell Res., 19, 2009
3ADI	Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing Descriptor: F21M12.9 protein, RNA (5'-R(*GP*GP*UP*UP*AP*UP*CP*GP*AP*G)-3'), RNA (5'-R(P*CP*UP*CP*GP*AP*UP*AP*AP*CP*C)-3') Authors: Yuan, Y.A, Chen, H.Y. Deposit date: 2010-01-22 Release date: 2010-05-26 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing Structure, 18, 2010
3ADL	Structure of TRBP2 and its molecule implications for miRNA processing Descriptor: RISC-loading complex subunit TARBP2, RNA (5'-R(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') Authors: Yuan, Y.A, Chen, H.Y. Deposit date: 2010-01-22 Release date: 2010-05-26 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing Structure, 18, 2010
2N3R	NMR structure of the II-III-VI three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement Descriptor: MAGNESIUM ION, RNA (62-MER) Authors: Bonneau, E, Girard, N, Lemieux, S, Legault, P. Deposit date: 2015-06-09 Release date: 2015-07-15 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. Rna, 21, 2015
4CSF	Structural insights into Toscana virus RNA encapsidation Descriptor: NUCLEOPROTEIN, RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3') Authors: Olal, D, Daumke, O. Deposit date: 2014-03-07 Release date: 2014-04-09 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.598 Å) Cite: Structural Insights Into RNA Encapsidation and Helical Assembly of the Toscana Virus Nucleoprotein. Nucleic Acids Res., 42, 2014
2ZI0	Crystal structure of Tav2b/siRNA complex Descriptor: Protein 2b, RNA (5'-D(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3') Authors: Yuan, Y.A, Chen, H.-Y. Deposit date: 2008-02-12 Release date: 2008-07-22 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b Embo Rep., 9, 2008
6D12	Crystal structure of C-terminal xRRM domain of human Larp7 bound to 7SK stem-loop 4 RNA Descriptor: La-related protein 7, human 7SK RNA stem-loop 4 Authors: Eichhorn, C.D, Cascio, D, Sawaya, M.R, Feigon, J. Deposit date: 2018-04-11 Release date: 2018-06-27 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.205 Å) Cite: Structural basis for recognition of human 7SK long noncoding RNA by the La-related protein Larp7. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1BNI	BARNASE WILDTYPE STRUCTURE AT PH 6.0 Descriptor: BARNASE Authors: Cameron, A, Henrick, K, Fersht, A.R, Dodson, G, Buckle, A.M. Deposit date: 1995-05-17 Release date: 1995-09-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structural analysis of mutations in the hydrophobic cores of barnase. J.Mol.Biol., 234, 1993
310D	Crystal structure of 2'-O-Me(CGCGCG)2: an RNA duplex at 1.3 A resolution. Hydration pattern of 2'-O-methylated RNA Descriptor: MAGNESIUM ION, RNA (5'-R(*(OMC)P*(OMG)P*(OMC)P*(OMG)P*(OMC)P*(OMG))-3') Authors: Adamiak, D.A, Milecki, J, Adamiak, R.W, Dauter, Z, Rypniewski, W.R. Deposit date: 1996-05-25 Release date: 1997-06-24 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA. Nucleic Acids Res., 25, 1997
8Q4O	RNA G-quadruplex from the 5'-UTR of human tyrosine kinase 2 (TYK2) Descriptor: RNA (5'-R(*CP*GP*GP*UP*AP*GP*CP*GP*GP*GP*UP*AP*UP*GP*GP*GP*UP*CP*CP*GP*GP*GP*U)-3') Authors: Toplishek, M, Kocman, V. Deposit date: 2023-08-07 Release date: 2024-03-06 Method: SOLUTION NMR Cite: High-Resolution Structure of RNA G-Quadruplex Containing Unique Structural Motifs Originating from the 5'-UTR of Human Tyrosine Kinase 2 (TYK2). Acs Omega, 9, 2024
4C7O	The structural basis of FtsY recruitment and GTPase activation by SRP RNA Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SIGNAL RECOGNITION PARTICLE PROTEIN, ... Authors: Voigts-Hoffmann, F, Schmitz, N, Shen, K, Shan, S.O, Ataide, S.F, Ban, N. Deposit date: 2013-09-23 Release date: 2013-11-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The Structural Basis of Ftsy Recruitment and Gtpase Activation by Srp RNA Mol.Cell, 52, 2013
4N0I	Crystal structure of S. cerevisiae mitochondrial GatFAB in complex with glutamine Descriptor: GLUTAMINE, Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial, ... Authors: Araiso, Y, Ishitani, R, Nureki, O. Deposit date: 2013-10-02 Release date: 2014-04-16 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.001 Å) Cite: Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases Nucleic Acids Res., 42, 2014
8SH4	Crystal structure of the tRNA (m1G37) methyltransferase apoenzyme from Anaplasma phagocytophilum Descriptor: GLYCEROL, tRNA (guanine-N(1)-)-methyltransferase Authors: Jannotta, C, Edele, D, Levanti, D, Carson, M, Prucha, G, Caesar, J, Picchiello, C, Collins, K, Garland, E, Handley-Pendleton, J, Hernandez, V, Leffler, S, Williams, D, Stojanoff, V, Perez, A, Halloran, J, Bolen, R. Deposit date: 2023-04-13 Release date: 2024-04-17 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of the m1G37 tRNA methyltransferase apoenzyme from Anaplasma phagocytophilum To Be Published
2M58	Structure of 2'-5' AG1 lariat forming ribozyme in its inactive state Descriptor: RNA (59-MER) Authors: Carlomagno, T, Amata, I, Codutti, L, Falb, M, Fohrer, J, Simon, B. Deposit date: 2013-02-18 Release date: 2013-04-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural principles of RNA catalysis in a 2'-5' lariat-forming ribozyme. J.Am.Chem.Soc., 135, 2013
315D	CRYSTAL STRUCTURE OF AN ALTERNATING OCTAMER R(GUAUGUA)D(C) WITH ADJACENT G-U WOBBLE PAIRS Descriptor: DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3') Authors: Biswas, R, Wahl, M.C, Ban, C, Sundaralingam, M. Deposit date: 1997-02-26 Release date: 1997-09-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G x U wobble pairs J.Mol.Biol., 267, 1997
4H5P	Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Tetramer Bound to Single-stranded RNA Descriptor: 28-mer poly(U) RNA, Nucleocapsid protein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2012-09-18 Release date: 2012-11-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012
2BJ2	RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: RNA (5'-R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C)-3'), RNA (5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP*CP*C)-3') Authors: Lee, A.J, Crothers, D.M. Deposit date: 1998-07-02 Release date: 1999-02-02 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence. Structure, 6, 1998
2M1V	NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid Descriptor: DNA_(5'-D(*CP*AP*GP*TP*GP*TP*C)-3')_, RNA (29-MER) Authors: Skilandat, M, Sigel, R.K.O. Deposit date: 2012-12-07 Release date: 2014-06-11 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Role of Mg(II) in DNA Cleavage Site Recognition in Group II Intron Ribozymes: SOLUTION STRUCTURE AND METAL ION BINDING SITES OF THE RNADNA COMPLEX. J.Biol.Chem., 289, 2014
4YVO	Crystal Structure of the TPR Domain of Arabidopsis FLU (FLU-TPR) Descriptor: Protein FLUORESCENT IN BLUE LIGHT, chloroplastic Authors: Zhang, M, Zhang, F, Liu, L. Deposit date: 2015-03-20 Release date: 2015-06-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.45 Å) Cite: The Non-canonical Tetratricopeptide Repeat (TPR) Domain of Fluorescent (FLU) Mediates Complex Formation with Glutamyl-tRNA Reductase. J.Biol.Chem., 290, 2015
1VOP	CONSERVED RNA COMPONENT OF THE PEPTIDYL TRANSFERASE CENTER, NMR, 33 STRUCTURES Descriptor: 23S RIBOSOMAL RNA Authors: Puglisi, E.V, Puglisi, J.D. Deposit date: 1997-08-30 Release date: 1997-12-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of a conserved RNA component of the peptidyl transferase centre. Nat.Struct.Biol., 4, 1997
3WND	Crystal structure of EF-Pyl Descriptor: CITRIC ACID, Protein translation elongation factor 1A Authors: Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2013-12-08 Release date: 2014-12-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.55 Å) Cite: A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.). J. Struct. Funct. Genomics, 16, 2015
3HYF	Crystal structure of HIV-1 RNase H p15 with engineered E. coli loop and active site inhibitor Descriptor: 2-(3,4-dichlorobenzyl)-5,6-dihydroxypyrimidine-4-carboxylic acid, ACETATE ION, GLYCEROL, ... Authors: Lansdon, E.B, Kirschberg, T.A. Deposit date: 2009-06-22 Release date: 2009-10-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: RNase H active site inhibitors of human immunodeficiency virus type 1 reverse transcriptase: design, biochemical activity, and structural information. J.Med.Chem., 52, 2009
11AS	ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE Descriptor: ASPARAGINE, ASPARAGINE SYNTHETASE Authors: Nakatsu, T, Kato, H, Oda, J. Deposit date: 1997-12-02 Release date: 1998-12-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase. Nat.Struct.Biol., 5, 1998
5V59	Crystal structure of catalytic fragment of human AlaRS in complex with Aze-SA Descriptor: 5'-O-{[(2S)-azetidine-2-carbonyl]sulfamoyl}adenosine, Alanine--tRNA ligase, cytoplasmic Authors: Zhou, H, Song, Y, Schimmel, P. Deposit date: 2017-03-13 Release date: 2018-01-10 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid. Nat Commun, 8, 2017

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