PDB: 6485 resultsInfo pagesStatus searchChemie searchBIRD

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2E74	Crystal Structure of the Cytochrome b6f Complex from M.laminosus Descriptor: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, Apocytochrome f, ... Authors: Cramer, W.A, Yamashita, E, Zhang, H. Deposit date: 2007-01-05 Release date: 2007-06-12 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of the Cytochrome b(6)f Complex: Quinone Analogue Inhibitors as Ligands of Heme c(n) J.Mol.Biol., 370, 2007
2G25	E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin Diphosphate Complex Descriptor: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1S)-1-HYDROXY-1-[(R)-HYDROXY(METHOXY)PHOSPHORYL]ETHYL}-5-(2-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Furey, W, Arjunan, P, Chandrasekhar, K. Deposit date: 2006-02-15 Release date: 2006-04-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A Thiamin-bound, Pre-decarboxylation Reaction Intermediate Analogue in the Pyruvate Dehydrogenase E1 Subunit Induces Large Scale Disorder-to-Order Transformations in the Enzyme and Reveals Novel Structural Features in the Covalently Bound Adduct. J.Biol.Chem., 281, 2006
2G67	E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme) Descriptor: Pyruvate dehydrogenase E1 component Authors: Furey, W, Chandrasekhar, K, Arjunan, P. Deposit date: 2006-02-24 Release date: 2006-09-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Active-site changes in the pyruvate dehydrogenase multienzyme complex E1 apoenzyme component from Escherichia coli observed at 2.32 A resolution. ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2RB5	X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily. Descriptor: MAGNESIUM ION, Putative uncharacterized protein, trioxido(oxo)tungsten Authors: Lu, Z, Dunaway-Mariano, D, Allen, K.N. Deposit date: 2007-09-18 Release date: 2008-04-22 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.03 Å) Cite: The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state. Proc.Natl.Acad.Sci.Usa, 105, 2008
4UBE	CRYSTAL STRUCTURE OF M TUBERCULOSIS ADENOSINE KINASE COMPLEXED WITH 2-FLURO ADENOSINE Descriptor: 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, Adenosine kinase Authors: Reddy, M.C.M, Palaninathan, S.K, Shetty, N.D, Owen, J.L, Watson, M.D, Sacchettini, J.C. Deposit date: 2014-08-12 Release date: 2014-09-24 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.933 Å) Cite: CRYSTAL STRUCTURE OF M TUBERCULOSIS ADENOSINE KINASE COMPLEXED WITH 2-FLURO ADENOSINE TO BE PUBLISHED
4UBU	Structure of a modified C93S variant of the 3-ketoacyl-CoA thiolase FadA5 from M. tuberculosis in complex with CoA Descriptor: Acetyl-CoA acetyltransferase FadA5, COENZYME A, GLYCEROL Authors: Schaefer, C.M, Kisker, C. Deposit date: 2014-08-13 Release date: 2014-12-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: FadA5 a Thiolase from Mycobacterium tuberculosis: A Steroid-Binding Pocket Reveals the Potential for Drug Development against Tuberculosis. Structure, 23, 2015
2RD8	Human Thymidylate Synthase Stabilized in Active Conformation by R163K Mutation: Asymmetry and Reactivity of Cys195 Descriptor: BETA-MERCAPTOETHANOL, PHOSPHATE ION, Thymidylate synthase Authors: Gibson, L.M, Lovelace, L.L, Lebioda, L. Deposit date: 2007-09-21 Release date: 2008-05-27 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The R163K Mutant of Human Thymidylate Synthase Is Stabilized in an Active Conformation: Structural Asymmetry and Reactivity of Cysteine 195. Biochemistry, 47, 2008
8CEI	Succinyl-CoA Reductase from Clostridium kluyveri (SucD) Descriptor: Succinate-semialdehyde dehydrogenase (acetylating) Authors: Pfister, P, Diehl, C, Erb, T.J. Deposit date: 2023-02-02 Release date: 2023-05-31 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis. Biochemistry, 62, 2023
5HV1	Rifampin phosphotransferase in complex with AMPPNP and rifampin from Listeria monocytogenes Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Phosphoenolpyruvate synthase, ... Authors: Zhang, P, Qi, X. Deposit date: 2016-01-28 Release date: 2016-03-30 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.103 Å) Cite: Structural basis of rifampin inactivation by rifampin phosphotransferase Proc.Natl.Acad.Sci.USA, 113, 2016
6DV2	Crystal Structure of Human Mitochondrial Trifunctional Protein Descriptor: Trifunctional enzyme subunit alpha, mitochondrial, Trifunctional enzyme subunit beta Authors: Fu, Z, Xia, C, Battaile, K.P, Kim, J.P. Deposit date: 2018-06-22 Release date: 2018-09-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Crystal structure of human mitochondrial trifunctional protein, a fatty acid beta-oxidation metabolon. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
8CEJ	Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with Mesaconyl-C1-CoA Descriptor: (2E)-2-METHYLBUT-2-ENEDIOIC ACID, Mesaconyl Coenzme A, Succinate-semialdehyde dehydrogenase (acetylating) Authors: Pfister, P, Diehl, C, Erb, T.J. Deposit date: 2023-02-02 Release date: 2023-05-31 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis. Biochemistry, 62, 2023
8CEK	Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with NADPH Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Succinate-semialdehyde dehydrogenase (acetylating) Authors: Pfister, P, Diehl, C, Erb, T.J. Deposit date: 2023-02-02 Release date: 2023-05-31 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis. Biochemistry, 62, 2023
5HXO	Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase with D71M, E75A and H103Y Mutants Descriptor: (2Z,6Z)-farnesyl diphosphate synthase, chloroplastic Authors: Lee, C.C, Chan, Y.T, Wang, A.H.J. Deposit date: 2016-01-31 Release date: 2017-04-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Crystal Structure and Potential Head-to-Middle Condensation Function of aZ,Z-Farnesyl Diphosphate Synthase. Acs Omega, 2, 2017
6DX8	Crystal structure of chalcone synthase from Selaginella moellendorffii Descriptor: Chalcone synthase Authors: Liou, G, Chiang, Y.C, Wang, Y, Weng, J.K. Deposit date: 2018-06-28 Release date: 2018-10-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants. J. Biol. Chem., 293, 2018
7K9Z	Crystal structure of SARS-CoV-2 receptor binding domain in complex with the Fab fragments of neutralizing antibodies 298 and 52 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 298 Fab Heavy Chain, 298 Fab Light Chain, ... Authors: Newton, J.C, Kucharska, I, Rujas, E, Cui, H, Julien, J.P. Deposit date: 2020-09-29 Release date: 2020-10-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Multivalency transforms SARS-CoV-2 antibodies into ultrapotent neutralizers. Nat Commun, 12, 2021
4UB6	Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Suga, M, Akita, F, Hirata, K, Ueno, G, Murakami, H, Nakajima, Y, Shimizu, T, Yamashita, K, Yamamoto, M, Ago, H, Shen, J.R. Deposit date: 2014-08-12 Release date: 2014-12-03 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses. Nature, 517, 2015
2RAV	X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily. Descriptor: MAGNESIUM ION, Putative uncharacterized protein, trioxido(oxo)tungsten Authors: Lu, Z, Dunaway-Mariano, D, Allen, K.N. Deposit date: 2007-09-17 Release date: 2008-04-22 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.07 Å) Cite: The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state. Proc.Natl.Acad.Sci.Usa, 105, 2008
2RAH	Human FDPS synthase in complex with novel inhibitor Descriptor: Farnesyl pyrophosphate synthetase, MAGNESIUM ION, SULFATE ION, ... Authors: Evdokimov, A.G, Barnett, B.L, Ebetino, F.H, Pokross, M. Deposit date: 2007-09-15 Release date: 2007-09-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Human FDPS synthase in complex with novel inhibitor To be Published
2RAR	X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily. Descriptor: MAGNESIUM ION, Putative uncharacterized protein, oxido(dioxo)vanadium Authors: Lu, Z, Dunaway-Mariano, D, Allen, K.N. Deposit date: 2007-09-17 Release date: 2008-04-22 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.52 Å) Cite: The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state. Proc.Natl.Acad.Sci.Usa, 105, 2008
6DXB	Crystal structure of chalcone synthase from Arabidopsis thaliana Descriptor: Chalcone synthase Authors: Liou, G, Chiang, Y.C, Wang, Y, Weng, J.K. Deposit date: 2018-06-28 Release date: 2018-10-17 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (1.549 Å) Cite: Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants. J. Biol. Chem., 293, 2018
2REF	Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula soaked with malonyl-CoA Descriptor: ACETYL COENZYME *A, CurA Authors: Geders, T.W, Smith, J.L. Deposit date: 2007-09-26 Release date: 2007-11-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.75 Å) Cite: GNAT-like strategy for polyketide chain initiation. Science, 318, 2007
6DHO	RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
4UMF	Crystal structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Moraxella catarrhalis in complex with Magnesium ion, Phosphate ion and KDO molecule Descriptor: 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE KDSC, 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, MAGNESIUM ION, ... Authors: Dhindwal, S, Tomar, S, Kumar, P. Deposit date: 2014-05-16 Release date: 2015-02-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Ligand-Bound Structures of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphatase from Moraxella Catarrhalis Reveal a Water Channel Connecting to the Active Site for the Second Step of Catalysis Acta Crystallogr.,Sect.D, 71, 2015
6DHE	RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution Descriptor: (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
5HN7	Crystal structure of Plasmodium vivax geranylgeranylpyrophosphate synthase complexed with BPH-1158 Descriptor: 5-(morpholin-4-ylsulfonyl)-2-{[3-(octyloxy)benzyl]oxy}benzoic acid, Farnesyl pyrophosphate synthase, putative Authors: Liu, Y.-L, Zhang, Y, Oldfield, E. Deposit date: 2016-01-18 Release date: 2016-09-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase. Biochemistry, 55, 2016

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