PDB: 5578 resultsInfo pagesStatus searchChemie searchBIRD

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6KDT	Crystal structure of human DNMT3B (Q772R)-DNMT3L complex Descriptor: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, FORMIC ACID, ... Authors: Lin, C.-C, Chen, Y.-P, Yang, W.-Z, Shen, C.-K, Yuan, H.S. Deposit date: 2019-07-02 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.87 Å) Cite: Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B. Nucleic Acids Res., 48, 2020
6KGP	LSD1-S2157 N5 adduct model Descriptor: 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... Authors: Niwa, H, Sato, S, Umehara, T. Deposit date: 2019-07-12 Release date: 2020-03-25 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem, 15, 2020
5KO9	Crystal Structure of the SRAP Domain of Human HMCES Protein Descriptor: Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein, UNKNOWN ATOM OR ION Authors: Halabelian, L, Li, Y, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Structural Genomics Consortium (SGC) Deposit date: 2016-06-29 Release date: 2016-08-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural basis of HMCES interactions with abasic DNA and multivalent substrate recognition. Nat.Struct.Mol.Biol., 26, 2019
5L3D	Human LSD1/CoREST: LSD1 Y761H mutation Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, REST corepressor 1 Authors: Pilotto, S, Speranzini, V, Marabelli, C, Mattevi, A. Deposit date: 2016-04-06 Release date: 2016-05-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: LSD1/KDM1A mutations associated to a newly described form of intellectual disability impair demethylase activity and binding to transcription factors. Hum.Mol.Genet., 25, 2016
6KGL	LSD1-CoREST-S2101 N5 adduct model Descriptor: 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... Authors: Niwa, H, Sato, S, Sengoku, S, Umehara, T, Yokoyama, S. Deposit date: 2019-07-12 Release date: 2020-03-25 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem, 15, 2020
5L6W	Structure Of the LIMK1-ATPgammaS-CFL1 Complex Descriptor: Cofilin-1, LIM domain kinase 1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Authors: Salah, E, Mathea, S, Oerum, S, Newman, J.A, Tallant, C, Adamson, R, Canning, P, Beltrami, A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Bullock, A.N. Deposit date: 2016-05-31 Release date: 2016-06-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Structure Of the LIMK1-ATPgammaS-CFL1 Complex To Be Published
5KIY	p97 ND1-A232E in complex with VIMP Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Selenoprotein S, ... Authors: Tang, W.K, Xia, D. Deposit date: 2016-06-17 Release date: 2017-12-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Structural basis for nucleotide-modulated p97 association with the ER membrane. Cell Discov, 3, 2017
6KFT	MVM NS2 mutant Nm42 in complex with CRM1-Ran-RanBP1 Descriptor: 1,2-ETHANEDIOL, Exportin-1, GLYCEROL, ... Authors: Sun, Q, Li, Y. Deposit date: 2019-07-08 Release date: 2020-07-15 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Cancer Therapy with Nanoparticle-Medicated Intracellular Expression of Peptide CRM1-Inhibitor. Int J Nanomedicine, 16, 2021
6KGO	LSD1-S2157 five-membered ring adduct model Descriptor: 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... Authors: Niwa, H, Sato, S, Umehara, T. Deposit date: 2019-07-12 Release date: 2020-03-25 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem, 15, 2020
5KV0	Human cyclophilin A at 278K, Data set 2 Descriptor: Peptidyl-prolyl cis-trans isomerase A Authors: Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H. Deposit date: 2016-07-13 Release date: 2016-08-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Conformational variation of proteins at room temperature is not dominated by radiation damage. J Synchrotron Radiat, 24, 2017
5KY6	Human muscle fructose-1,6-bisphosphate aldolase Descriptor: Fructose-bisphosphate aldolase A Authors: Wisniewski, J, Barciszewski, J, Jaskolski, M, Rakus, D. Deposit date: 2016-07-21 Release date: 2017-06-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.941 Å) Cite: Crystal structure of human muscle aldolase To Be Published
6KGN	LSD1-CoREST-S2116 N5 adduct model Descriptor: 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... Authors: Niwa, H, Sato, S, Umehara, T. Deposit date: 2019-07-12 Release date: 2020-03-25 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.62 Å) Cite: Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem, 15, 2020
6KCS	Crystal structure of HIRAN domain of HLTF in complex with duplex DNA Descriptor: DNA (5'-D(*AP*CP*TP*GP*TP*AP*CP*GP*TP*AP*CP*AP*GP*T)-3'), Helicase-like transcription factor Authors: Hishiki, A, Hashimoto, A. Deposit date: 2019-06-28 Release date: 2020-06-10 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of HIRAN domain of human HLTF bound to duplex DNA provides structural basis for DNA unwinding to initiate replication fork regression. J.Biochem., 167, 2020
5L3B	Human LSD1/CoREST: LSD1 D556G mutation Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, REST corepressor 1 Authors: Pilotto, S, Speranzini, V, Marabelli, C. Deposit date: 2016-04-06 Release date: 2016-05-04 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.3 Å) Cite: LSD1/KDM1A mutations associated to a newly described form of intellectual disability impair demethylase activity and binding to transcription factors. Hum.Mol.Genet., 25, 2016
5KPN	Structure of human PARP1 catalytic domain bound to a quinazoline-2,4(1H,3H)-dione inhibitor Descriptor: 1-[[4-fluoranyl-3-(3-oxidanylidene-4-propyl-piperazin-1-yl)carbonyl-phenyl]methyl]quinazoline-2,4-dione, Poly [ADP-ribose] polymerase 1 Authors: Cao, R, Wang, Y.L, Zhou, J, Yao, H.P, Huang, N, Xu, B.L. Deposit date: 2016-07-05 Release date: 2016-12-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of human PARP1 catalytic domain bound to a quinazoline-2,4(1H,3H)-dione inhibitor To Be Published
6KDA	Crystal structure of human DNMT3B-DNMT3L in complex with DNA containing CpGpG site Descriptor: DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ... Authors: Lin, C.-C, Chen, Y.-P, Yang, W.-Z, Shen, C.-K, Yuan, H.S. Deposit date: 2019-07-01 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.909 Å) Cite: Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B. Nucleic Acids Res., 48, 2020
6KM7	The structural basis for the internal interaction in RBBP5 Descriptor: HEXAETHYLENE GLYCOL, NONAETHYLENE GLYCOL, Retinoblastoma-binding protein 5, ... Authors: Han, J, Li, T, Chen, Y. Deposit date: 2019-07-31 Release date: 2019-10-02 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.801 Å) Cite: The internal interaction in RBBP5 regulates assembly and activity of MLL1 methyltransferase complex. Nucleic Acids Res., 47, 2019
6KEI	Crystal structure of BRD4 bromodomain 1 (BD1) in complex with 16-methoxy-11-methyl-6-[(pyridin-2-yl)methoxy]-2-oxa-11-azatetracyclo[8.6.1.03,8.013,17]heptadeca-1(16),3,5,7,9,13(17),14-heptaen-12-one Descriptor: 16-methoxy-11-methyl-6-[(pyridin-2-yl)methoxy]-2-oxa-11-azatetracyclo[8.6.1.03,8.013,17]heptadeca-1(16),3,5,7,9,13(17),14-heptaen-12-one, Bromodomain-containing protein 4, FORMIC ACID Authors: Lee, B.I, Park, T.H. Deposit date: 2019-07-04 Release date: 2020-07-08 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.451 Å) Cite: Synthesis and Structure-Activity Relationships of Aristoyagonine Derivatives as Brd4 Bromodomain Inhibitors with X-ray Co-Crystal Research. Molecules, 26, 2021
5L8L	Aurora-A kinase domain in complex with vNAR-D01 (crystal form 1) Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Aurora kinase A, ... Authors: Burgess, S.G, Bayliss, R. Deposit date: 2016-06-08 Release date: 2016-07-20 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Allosteric inhibition of Aurora-A kinase by a synthetic vNAR domain. Open Biology, 6, 2016
5KUZ	Human cyclophilin A at 278K, Data set 1 Descriptor: Peptidyl-prolyl cis-trans isomerase A Authors: Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H. Deposit date: 2016-07-13 Release date: 2016-08-10 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Conformational variation of proteins at room temperature is not dominated by radiation damage. J Synchrotron Radiat, 24, 2017
6KGQ	LSD1-FCPA-MPE five-membered ring adduct model Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[4-[5-fluoranyl-2-(trifluoromethyl)phenyl]phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Niwa, H, Sato, S, Handa, N, Umehara, T. Deposit date: 2019-07-12 Release date: 2020-03-25 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem, 15, 2020
5L3F	LSD1-CoREST1 in complex with polymyxin B Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, Polmyxin B, ... Authors: Speranzini, V, Rotili, D, Ciossani, G, Pilotto, S, Forgione, M, Lucidi, A, Forneris, F, Velankar, S, Mai, A, Mattevi, A. Deposit date: 2016-04-10 Release date: 2016-09-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features. Sci Adv, 2, 2016
6QXH	Crystal structure of His-tag human thymidylate synthase (HT-hTS) in complex with dUMP Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Pozzi, C, Mangani, M. Deposit date: 2019-03-07 Release date: 2019-04-10 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structural Comparison ofEnterococcus faecalisand Human Thymidylate Synthase Complexes with the Substrate dUMP and Its Analogue FdUMP Provides Hints about Enzyme Conformational Variabilities. Molecules, 24, 2019
5KUQ	Human cyclophilin A at 100K, Data set 4 Descriptor: Peptidyl-prolyl cis-trans isomerase A Authors: Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H. Deposit date: 2016-07-13 Release date: 2016-08-10 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Conformational variation of proteins at room temperature is not dominated by radiation damage. J Synchrotron Radiat, 24, 2017
5KV4	Human cyclophilin A at 278K, Data set 6 Descriptor: Peptidyl-prolyl cis-trans isomerase A Authors: Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H. Deposit date: 2016-07-13 Release date: 2016-08-10 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Conformational variation of proteins at room temperature is not dominated by radiation damage. J Synchrotron Radiat, 24, 2017

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