PDB: 699 resultsInfo pagesStatus searchChemie searchBIRD

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7ENC	TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED) Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... Authors: Chen, X, Qi, Y, Wang, X, Wu, Z, Yin, X, Li, J, Liu, W, Xu, Y. Deposit date: 2021-04-16 Release date: 2021-05-26 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (4.13 Å) Cite: Structures of the human Mediator and Mediator-bound preinitiation complex. Science, 372, 2021
5WLW	Crystal Structure of the Human Mitochondrial Cysteine Desulfurase with active Cysteine Loop within ISCU1 active site, coordinating Zn ion. Complexed with human ISD11 and E. coli ACP1 at 3.3A. Descriptor: Acyl carrier protein, Cysteine desulfurase, mitochondrial, ... Authors: Boniecki, M.T, Cygler, M. Deposit date: 2017-07-27 Release date: 2017-11-15 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.317 Å) Cite: Structure and functional dynamics of the mitochondrial Fe/S cluster synthesis complex. Nat Commun, 8, 2017
5OQJ	STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH Descriptor: DNA repair helicase RAD25, DNA repair helicase RAD3, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Schilbach, S, Hantsche, M, Tegunov, D, Dienemann, C, Wigge, C, Henning, U, Cramer, P. Deposit date: 2017-08-11 Release date: 2018-04-25 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Structures of transcription pre-initiation complex with TFIIH and Mediator. Nature, 551, 2017
8CEO	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Wang, H, Cramer, P. Deposit date: 2023-02-02 Release date: 2023-03-08 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
6GYM	Structure of a yeast closed complex with distorted DNA (CCdist) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. Deposit date: 2018-06-30 Release date: 2018-12-05 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
7ML1	RNA polymerase II pre-initiation complex (PIC2) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7ML2	RNA polymerase II pre-initiation complex (PIC3) Descriptor: BJ4_G0004860.mRNA.1.CDS.1, BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7ML4	RNA polymerase II initially transcribing complex (ITC) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-03-09 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7ML0	RNA polymerase II pre-initiation complex (PIC1) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
4V6X	Structure of the human 80S ribosome Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Anger, A.M, Armache, J.-P, Berninghausen, O, Habeck, M, Subklewe, M, Wilson, D.N, Beckmann, R. Deposit date: 2013-02-27 Release date: 2014-07-09 Last modified: 2023-02-01 Method: ELECTRON MICROSCOPY (5 Å) Cite: Structures of the human and Drosophila 80S ribosome. Nature, 497, 2013
6I9P	Iron-free state of Rana catesbeiana H' ferritin variant H54N Descriptor: CHLORIDE ION, Ferritin, middle subunit, ... Authors: Pozzi, C, Di Pisa, F, Mangani, S. Deposit date: 2018-11-24 Release date: 2019-05-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Effect of the point mutation H54N on the ferroxidase process of Rana catesbeiana H' ferritin. J.Inorg.Biochem., 197, 2019
4JPY	Iron and phenylalanine bound crystal structure of phenylalanine hydroxylase from Chromobacterium violaceum Descriptor: FE (III) ION, PHENYLALANINE, Phenylalanine-4-hydroxylase Authors: Ronau, J.A, Abu-Omar, M.M, Das, C. Deposit date: 2013-03-19 Release date: 2013-08-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.13 Å) Cite: An additional substrate binding site in a bacterial phenylalanine hydroxylase. Eur.Biophys.J., 42, 2013
8WAO	Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positioned 5nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.4 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAL	Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positioned 3nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (8.52 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAK	Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positioned 2nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (5.47 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAN	Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positioned 4nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.07 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAS	Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positioned 9nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.13 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAP	Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positioned 6nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (5.85 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAR	Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positioned 8nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (7.2 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAQ	Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positioned 7nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.29 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
7NW0	RNA polymerase II pre-initiation complex with open promoter DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, CDK-activating kinase assembly factor MAT1, ... Authors: Aibara, S, Schilbach, S, Cramer, P. Deposit date: 2021-03-16 Release date: 2021-05-05 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Structures of mammalian RNA polymerase II pre-initiation complexes. Nature, 594, 2021
8EBS	Initial DNA-lesion (Cy5) binding by XPC and TFIIH Descriptor: CALCIUM ION, Centrin-2, DNA, ... Authors: Kim, J, Yang, W. Deposit date: 2022-08-31 Release date: 2023-04-19 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (4 Å) Cite: Lesion recognition by XPC, TFIIH and XPA in DNA excision repair. Nature, 617, 2023
8EBW	Initial DNA-lesion (AP) binding by XPC and TFIIH complex2 Descriptor: CALCIUM ION, Centrin-2, DNA, ... Authors: Kim, J, Yang, W. Deposit date: 2022-08-31 Release date: 2023-04-19 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Lesion recognition by XPC, TFIIH and XPA in DNA excision repair. Nature, 617, 2023
8EBV	Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1 Descriptor: CALCIUM ION, Centrin-2, DNA, ... Authors: Kim, J, Yang, W. Deposit date: 2022-08-31 Release date: 2023-04-19 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (7.1 Å) Cite: Lesion recognition by XPC, TFIIH and XPA in DNA excision repair. Nature, 617, 2023
4ETS	Crystal structure of Campylobacter jejuni ferric uptake regulator Descriptor: CHLORIDE ION, Ferric uptake regulation protein, ZINC ION Authors: Sarvan, S, Brunzelle, J.B, Couture, J.-F. Deposit date: 2012-04-24 Release date: 2012-06-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation. Proc.Natl.Acad.Sci.USA, 109, 2012

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