Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7OSW
DownloadVisualize
BU of 7osw by Molmil
Structure and folding of a 600-million-year-old nuclear coactivator binding domain suggest conservation of dynamic properties
Descriptor: NCBD
Authors:Chi, C.
Deposit date:2021-06-09
Release date:2022-04-20
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The dynamic properties of a nuclear coactivator binding domain are evolutionarily conserved.
Commun Biol, 5, 2022
7PEQ
DownloadVisualize
BU of 7peq by Molmil
Model of the outer rings of the human nuclear pore complex
Descriptor: Nuclear pore complex protein Nup107, Nuclear pore complex protein Nup133, Nuclear pore complex protein Nup160, ...
Authors:Schuller, A.P, Wojtynek, M, Mankus, D, Tatli, M, Kronenberg-Tenga, R, Regmi, S.G, Dasso, M, Weis, K, Medalia, O, Schwartz, T.U.
Deposit date:2021-08-11
Release date:2021-10-20
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (35 Å)
Cite:The cellular environment shapes the nuclear pore complex architecture.
Nature, 598, 2021
7Q4O
DownloadVisualize
BU of 7q4o by Molmil
Substrate-bound A-like U2 snRNP
Descriptor: BPS oligo, PHD finger-like domain-containing protein 5A, Splicing factor 3A subunit 2, ...
Authors:Tholen, J, Galej, W.P.
Deposit date:2021-11-01
Release date:2022-03-30
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Structural basis of branch site recognition by the human spliceosome.
Science, 375, 2022
7Q4P
DownloadVisualize
BU of 7q4p by Molmil
U2 snRNP after ATP-dependent remodelling
Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3A subunit 2, Splicing factor 3A subunit 3, ...
Authors:Tholen, J, Galej, W.P.
Deposit date:2021-11-01
Release date:2022-03-30
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.15 Å)
Cite:Structural basis of branch site recognition by the human spliceosome.
Science, 375, 2022
6SZS
DownloadVisualize
BU of 6szs by Molmil
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Muller, C, Beckert, B, Wilson, D.N.
Deposit date:2019-10-02
Release date:2019-12-04
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis.
Nat Commun, 10, 2019
6BY1
DownloadVisualize
BU of 6by1 by Molmil
E. coli pH03H9 complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Amiri, H, Noller, H.F.
Deposit date:2017-12-19
Release date:2019-02-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.94 Å)
Cite:Structural evidence for product stabilization by the ribosomal mRNA helicase.
Rna, 25, 2019
7S1K
DownloadVisualize
BU of 7s1k by Molmil
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Tsai, K, Stojkovic, V, Lee, D.J, Young, I.D, Szal, T, Vazquez-Laslop, N, Mankin, A.S, Fraser, J.S, Galonic Fujimori, D.
Deposit date:2021-09-02
Release date:2022-01-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics.
Nat.Struct.Mol.Biol., 29, 2022
7SSW
DownloadVisualize
BU of 7ssw by Molmil
Late translocation intermediate with EF-G dissociated (Structure VI)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7SSN
DownloadVisualize
BU of 7ssn by Molmil
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7SS9
DownloadVisualize
BU of 7ss9 by Molmil
Late translocation intermediate with EF-G partially dissociated (Structure V)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Loveland, A.B, Gamper, H.B, Hou, Y, Korostelev, A.A.
Deposit date:2021-11-10
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7ST7
DownloadVisualize
BU of 7st7 by Molmil
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-12
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7ST6
DownloadVisualize
BU of 7st6 by Molmil
Pre translocation, non-rotated 70S ribosome (Structure I)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-12
Release date:2022-02-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7SSL
DownloadVisualize
BU of 7ssl by Molmil
Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7ST2
DownloadVisualize
BU of 7st2 by Molmil
Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7QCD
DownloadVisualize
BU of 7qcd by Molmil
CryoEM structure of the Smc5/6-holocomplex (composite structure)
Descriptor: E3 SUMO-protein ligase MMS21, Non-structural maintenance of chromosome element 3, Non-structural maintenance of chromosome element 4, ...
Authors:Hallett, S.T, Oliver, A.W.
Deposit date:2021-11-23
Release date:2022-09-21
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Cryo-EM structure of the Smc5/6 holo-complex.
Nucleic Acids Res., 50, 2022
7S1I
DownloadVisualize
BU of 7s1i by Molmil
Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Young, I.D, Stojkovic, V, Tsai, K, Lee, D.J, Fraser, J.S, Galonic Fujimori, D.
Deposit date:2021-09-02
Release date:2022-03-02
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics.
Nat.Struct.Mol.Biol., 29, 2022
7S1J
DownloadVisualize
BU of 7s1j by Molmil
Wild-type Escherichia coli ribosome with antibiotic radezolid
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Young, I.D, Stojkovic, V, Tsai, K, Lee, D.J, Fraser, J.S, Galonic Fujimori, D.
Deposit date:2021-09-02
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (2.47 Å)
Cite:Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics.
Nat.Struct.Mol.Biol., 29, 2022
8PVA
DownloadVisualize
BU of 8pva by Molmil
Structure of bacterial ribosome determined by cryoEM at 100 keV
Descriptor: 16S rRNA, 23S rRNA, 50S ribosomal protein L14, ...
Authors:McMullan, G, Naydenova, K, Mihaylov, D, Peet, M.J, Wilson, H, Yamashita, K, Dickerson, J.L, Chen, S, Cannone, G, Lee, Y, Hutchings, K.A, Gittins, O, Sobhy, M, Wells, T, El-Gomati, M.M, Dalby, J, Meffert, M, Schulze-Briese, C, Henderson, R, Russo, C.J.
Deposit date:2023-07-17
Release date:2023-11-29
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structure determination by cryoEM at 100 keV.
Proc.Natl.Acad.Sci.USA, 120, 2023
7SSO
DownloadVisualize
BU of 7sso by Molmil
Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7SSD
DownloadVisualize
BU of 7ssd by Molmil
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-10
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
8PHJ
DownloadVisualize
BU of 8phj by Molmil
cA4-bound Cami1 in complex with 70S ribosome
Descriptor: 16S rRNA, 23S rRNA (2862-MER), 5S rRNA, ...
Authors:Tamulaitiene, G, Mogila, I, Sasnauskas, G, Tamulaitis, G.
Deposit date:2023-06-20
Release date:2023-12-13
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Ribosomal stalk-captured CARF-RelE ribonuclease inhibits translation following CRISPR signaling.
Science, 382, 2023
6TE1
DownloadVisualize
BU of 6te1 by Molmil
Structure of the KDM1A/CoREST complex with the inhibitor 2-[3-{4-chloro-3-[(4-chlorophenyl)ethynyl]phenyl}-1-(3-morpholin-4-ylpropyl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl]-2-oxoethanol
Descriptor: 5-[4-cyclobutyl-1-[2-(4-piperidin-4-yloxyphenoxy)ethyl]imidazol-2-yl]-4-methyl-thieno[3,2-b]pyrrole, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Pasqualato, S, Cecatiello, V.
Deposit date:2019-11-11
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Discovery of Reversible Inhibitors of KDM1A Efficacious in Acute Myeloid Leukemia Models.
Acs Med.Chem.Lett., 11, 2020
8P18
DownloadVisualize
BU of 8p18 by Molmil
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
Authors:Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
Deposit date:2023-05-11
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P16
DownloadVisualize
BU of 8p16 by Molmil
E167K RF2 on E. coli 70S release complex with UGG (Structure I)
Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
Authors:Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
Deposit date:2023-05-11
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P17
DownloadVisualize
BU of 8p17 by Molmil
E167K RF2 on E. coli 70S release complex with UGG (Structure II)
Descriptor: 1,4-DIAMINOBUTANE, 16S RNA, 23S rRNA, ...
Authors:Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
Deposit date:2023-05-11
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published

225946

건을2024-10-09부터공개중

PDB statisticsPDBj update infoContact PDBjnumon