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4HIF
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BU of 4hif by Molmil
Ultrahigh-resolution crystal structure of Z-DNA in complex with Zn2+ ions
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE (FULLY PROTONATED FORM), ...
Authors:Drozdzal, P, Gilski, M, Kierzek, R, Lomozik, L, Jaskolski, M.
Deposit date:2012-10-11
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.
Acta Crystallogr.,Sect.D, 69, 2013
6AGF
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BU of 6agf by Molmil
Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta1
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Pan, X.J, li, Z.Q, Zhou, Q, Shen, H.Z, Wu, K, Huang, X.S, Chen, J.F, Zhang, J.R, Zhu, X.C, Lei, J.L, Xiong, W, Gong, H.P, Xiao, B.L, Yan, N.
Deposit date:2018-08-11
Release date:2018-10-10
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta 1.
Science, 362, 2018
2FK6
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BU of 2fk6 by Molmil
Crystal Structure of RNAse Z/tRNA(Thr) complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, RIBONUCLEASE Z, ...
Authors:Li de la Sierra-Gallay, I, Mathy, N, Pellegrini, O, Condon, C.
Deposit date:2006-01-04
Release date:2006-03-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA.
Nat.Struct.Mol.Biol., 13, 2006
2E7Y
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BU of 2e7y by Molmil
High resolution structure of T. maritima tRNase Z
Descriptor: S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ...
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
3CIR
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BU of 3cir by Molmil
E. coli Quinol fumarate reductase FrdA T234A mutation
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tomasiak, T.M, Maklashina, E, Cecchini, G, Iverson, T.M.
Deposit date:2008-03-11
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
J.Biol.Chem., 283, 2008
1KH5
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BU of 1kh5 by Molmil
E. COLI ALKALINE PHOSPHATASE MUTANT (D330N) MIMIC OF THE TRANSITION STATES WITH ALUMINIUM FLUORIDE
Descriptor: ALKALINE PHOSPHATASE, ALUMINUM FLUORIDE, MAGNESIUM ION, ...
Authors:Le Du, M.H, Lamoure, C, Muller, B.H, Bulgakov, O.V, Lajeunesse, E.
Deposit date:2001-11-29
Release date:2002-03-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 316, 2002
1KHJ
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BU of 1khj by Molmil
E. COLI ALKALINE PHOSPHATASE MUTANT (D153HD330N) MIMIC OF THE TRANSITION STATES WITH ALUMINIUM FLUORIDE
Descriptor: ALUMINUM FLUORIDE, Alkaline phosphatase, ZINC ION
Authors:Le Du, M.H, Lamoure, C, Muller, B.H, Bulgakov, O.V, Lajeunesse, E, Menez, A, Boulain, J.C.
Deposit date:2001-11-30
Release date:2002-03-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 316, 2002
1KCE
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BU of 1kce by Molmil
E. COLI THYMIDYLATE SYNTHASE MUTANT E58Q IN COMPLEX WITH CB3717 AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)
Descriptor: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE
Authors:Sage, C.R, Rutenber, E.E, Stout, T.J, Stroud, R.M.
Deposit date:1996-10-22
Release date:1997-04-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:An essential role for water in an enzyme reaction mechanism: the crystal structure of the thymidylate synthase mutant E58Q.
Biochemistry, 35, 1996
9NLQ
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BU of 9nlq by Molmil
E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:E.coli Initiation complex with YbiT-EQ2 (Hydrolytic-II)
To Be Published
9NL5
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BU of 9nl5 by Molmil
E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-02
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:E. coli pre-elongation complex without an A-site tRNA with EttA-EQ2
To Be Published
5JRD
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BU of 5jrd by Molmil
E. coli Hydrogenase-1 variant P508A
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
Authors:Carr, S.B, Phillips, S.E.V, Armstrong, F.A, Evans, R.M, Brooke, E.J, Islam, S.T.A.
Deposit date:2016-05-06
Release date:2017-03-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Importance of the Active Site "Canopy" Residues in an O2-Tolerant [NiFe]-Hydrogenase.
Biochemistry, 56, 2017
3CW5
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BU of 3cw5 by Molmil
E. coli Initiator tRNA
Descriptor: Initiator tRNA
Authors:Barraud, P, Schmitt, E, Mechulam, Y, Dardel, F, Tisne, C.
Deposit date:2008-04-21
Release date:2008-09-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis.
Nucleic Acids Res., 36, 2008
8RND
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BU of 8rnd by Molmil
Cathepsin S in complex with NNPI-C10 inhibitor
Descriptor: 1,2-ETHANEDIOL, Cathepsin S, DI(HYDROXYETHYL)ETHER, ...
Authors:Petruzzella, A, Lau, K, Pojer, F, Oricchio, E.
Deposit date:2024-01-09
Release date:2024-06-05
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins.
Nat.Chem.Biol., 20, 2024
9NLB
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BU of 9nlb by Molmil
E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
To Be Published
9NLJ
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BU of 9nlj by Molmil
E.coli Initiation complex with Uup-EQ2
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:E.coli Initiation complex with Uup-EQ2
To Be Published
9NLS
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BU of 9nls by Molmil
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
To Be Published
9NKL
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BU of 9nkl by Molmil
E. coli 70S initiation complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-01
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:E. coli 70S initiation complex
To Be Published
9NJF
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BU of 9njf by Molmil
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-02-27
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
To Be Published
9NJV
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BU of 9njv by Molmil
E. coli 70S initiation complex (bL33 absent)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-02-28
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:E. coli 70S initiation complex (bL33 absent)
To Be Published
1KMK
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BU of 1kmk by Molmil
E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE, SELENOCYSTEINE LYASE
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KMJ
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BU of 1kmj by Molmil
E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
3D27
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BU of 3d27 by Molmil
E. coli methionine aminopeptidase with Fe inhibitor W29
Descriptor: 4-(3-ethylthiophen-2-yl)benzene-1,2-diol, MANGANESE (II) ION, Methionine aminopeptidase
Authors:Ye, Q.Z, Chai, S, He, H.Z.
Deposit date:2008-05-07
Release date:2008-08-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of inhibitors of Escherichia coli methionine aminopeptidase with the Fe(II)-form selectivity and antibacterial activity.
J.Med.Chem., 51, 2008
8RJ6
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BU of 8rj6 by Molmil
E. coli adenylate kinase in complex with ATP and AMP and Mg2+ as a result of enzymatic AP4A hydrolysis.
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8RJ4
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BU of 8rj4 by Molmil
E. coli adenylate kinase in complex with two ADP molecules and Mg2+ as a result of enzymatic AP4A hydrolysis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, CHLORIDE ION, ...
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8RJ9
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BU of 8rj9 by Molmil
E. coli adenylate kinase Asp84Ala variant in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024

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