PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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5FK5	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-14 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.315 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
3SI8	Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2) Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, ... Authors: Biertumpfel, C, Zhao, Y, Kondo, Y, Ramon-Maiques, S, Gregory, M, Lee, J.Y, Masutani, C, Lehmann, A.R, Hanaoka, F, Yang, W. Deposit date: 2011-06-17 Release date: 2011-08-03 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure and mechanism of human DNA polymerase eta. Nature, 465, 2010
5FK3	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-14 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
1PO1	POLIOVIRUS (TYPE 1, MAHONEY) IN COMPLEX WITH R80633, AN INHIBITOR OF VIRAL REPLICATION Descriptor: (METHYLPYRIDAZINE PIPERIDINE BUTYLOXYPHENYL)ETHYLACETATE, MYRISTIC ACID, POLIOVIRUS TYPE 1 MAHONEY Authors: Hiremath, C.N, Filman, D.J, Grant, R.A, Hogle, J.M. Deposit date: 1997-01-08 Release date: 1997-12-03 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Ligand-induced conformational changes in poliovirus-antiviral drug complexes. Acta Crystallogr.,Sect.D, 53, 1997
5FKG	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-15 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.95 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FK4	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU Descriptor: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-14 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.43 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FJ0	Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group Descriptor: HMKT-7, MAGNESIUM ION Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-05 Release date: 2016-09-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FK2	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG Descriptor: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-14 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
2CA1	Crystal structure of the IBV coronavirus nucleocapsid Descriptor: NUCLEOCAPSID PROTEIN Authors: Jayaram, H, Fan, H, Bowman, B.R, Ooi, A, Jayaram, J, Collison, E.W, Lescar, J, Prasad, B.V.V. Deposit date: 2005-12-16 Release date: 2006-06-19 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: X-Ray Structures of the N- and C-Terminal Domains of a Coronavirus Nucleocapsid Protein: Implications for Nucleocapsid Formation. J.Virol., 80, 2006
3FYC	Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi Descriptor: PHOSPHATE ION, Probable dimethyladenosine transferase Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-01-22 Release date: 2009-06-30 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural and functional divergence within the Dim1/KsgA family of rRNA methyltransferases. J.Mol.Biol., 391, 2009
6WZS	Fusibacterium ulcerans ZTP riboswitch bound to m-1-pyridinyl AICA Descriptor: 5-amino-1-(pyridin-3-yl)-1H-imidazole-4-carboxamide, Fusibacterium ulcerans ZTP riboswitch, MAGNESIUM ION, ... Authors: Pichling, P, Jones, C.P, Ferre-D'Amare, A.R, Tran, B. Deposit date: 2020-05-14 Release date: 2021-03-24 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.23 Å) Cite: Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design. Cell Chem Biol, 27, 2020
6WZR	Fusibacterium ulcerans ZTP riboswitch bound to p-1-pyridinyl AICA Descriptor: 5-amino-1-(pyridin-4-yl)-1H-imidazole-4-carboxamide, Fusibacterium ulcerans ZTP riboswitch, MAGNESIUM ION, ... Authors: Pichling, P, Jones, C.P, Ferre-D'Amare, A.R, Tran, B. Deposit date: 2020-05-14 Release date: 2021-03-24 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design. Cell Chem Biol, 27, 2020
8OTO	SARS-CoV-2 nsp10-16 methyltransferase in complex with AMP Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Kremling, V, Sprenger, J, Oberthuer, D. Deposit date: 2023-04-21 Release date: 2023-05-03 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structures of Tubercidin and Adenosine bound to the active site of the SARS-CoV-2 methyltransferase nsp10-16 To Be Published
8OTR	SARS-CoV-2 nsp10-16 methyltransferase in complex with SAM analog BDH 33959089 Descriptor: (2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-N-(1-methylpiperidin-4-yl)-3,4-bis(oxidanyl)oxolane-2-carboxamide, 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, ... Authors: Kremling, V, Sprenger, J, Oberthuer, D. Deposit date: 2023-04-21 Release date: 2023-05-24 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Crystal structures of Tubercidin and Adenosine bound to the active site of the SARS-CoV-2 methyltransferase nsp10-16 To Be Published
8OV4	SARS-CoV-2 nsp10-16 methyltransferase in complex with Toyocamycin Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Kremling, V, Sprenger, J, Oberthuer, D. Deposit date: 2023-04-25 Release date: 2023-05-10 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Crystal structures of Tubercidin and Adenosine bound to the active site of theSARS-CoV-2 methyltransferase nsp10-16 To Be Published
8OV1	SARS-CoV-2 nsp10-16 methyltransferase in complex with ADP Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Kremling, V, Sprenger, J, Oberthuer, D. Deposit date: 2023-04-25 Release date: 2023-05-10 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Crystal structures of Tubercidin and Adenosine bound to the active site of the SARS-CoV-2 methyltransferase nsp10-16 To Be Published
8OV3	SARS-CoV-2 nsp10-16 methyltransferase in complex with 5-Iodotubercidin Descriptor: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL, 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, ... Authors: Kremling, V, Sprenger, J, Oberthuer, D. Deposit date: 2023-04-25 Release date: 2023-05-10 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Crystal structures of Tubercidin and Adenosine bound to the active site of the SARS-CoV-2 methyltransferase nsp10-16 To Be Published
8OV2	SARS-CoV-2 nsp10-16 methyltransferase in complex with Sangivamycin Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Kremling, V, Sprenger, J, Oberthuer, D. Deposit date: 2023-04-25 Release date: 2023-05-10 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Crystal structures of Tubercidin and Adenosine bound to the active site of the SARS-CoV-2 methyltransferase nsp10-16 To Be Published
3U6Y	Crystal structure of ALBA2-DNA complex Descriptor: DNA (5'-D(*CP*CP*GP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*G)-3'), DNA/RNA-binding protein Alba 2, ... Authors: Kumarevel, T, Tanaka, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2011-10-13 Release date: 2012-02-22 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of archaeal chromatin protein Alba2-double-stranded DNA complex from Aeropyrum pernix K1. J.Biol.Chem., 287, 2012
6KHF	Crystal structure of CLK3 in complex with CX-4945 Descriptor: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid, Dual specificity protein kinase CLK3 Authors: Lee, J.Y, Yun, J.S, Jin, H, Chang, J.H. Deposit date: 2019-07-15 Release date: 2019-10-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.598 Å) Cite: Structural Basis for the Selective Inhibition of Cdc2-Like Kinases by CX-4945. Biomed Res Int, 2019, 2019
5FJ1	Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group Descriptor: HMKT-7, MAGNESIUM ION, SODIUM ION Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-05 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.75 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
4OGP	Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P21) Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA topoisomerase 2-associated protein PAT1 Authors: Fourati-Kammoun, Z, Kolesnikova, O, Back, R, Keller, J, Lazar, N, Gaudon-Plesse, C, Seraphin, B, Graille, M. Deposit date: 2014-01-16 Release date: 2014-10-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The C-terminal domain from S. cerevisiae Pat1 displays two conserved regions involved in decapping factor recruitment. Plos One, 9, 2014
2BBP	NMR structures of the peptide linked to the genome (VPg) of poliovirus Descriptor: Genome linked protein VPg Authors: Schein, C.H, Oezguen, N. Deposit date: 2005-10-17 Release date: 2006-03-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR structure of the viral peptide linked to the genome (VPg) of poliovirus. Peptides, 27, 2006
5FKD	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-15 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FJC	SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU Descriptor: BARIUM ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2015-10-07 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.71 Å) Cite: A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

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