PDB: 1711 resultsInfo pagesStatus searchChemie searchBIRD

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5OHO	Crystal structure of the KOWx-KOW4 domain of human DSIF Descriptor: CHLORIDE ION, GLYCEROL, Transcription elongation factor SPT5 Authors: Bernecky, C, Plitzko, J.M, Cramer, P. Deposit date: 2017-07-17 Release date: 2017-09-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.601 Å) Cite: Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
1CLQ	CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION Descriptor: CALCIUM ION, DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3'), ... Authors: Shamoo, Y, Steitz, T.A. Deposit date: 1999-04-30 Release date: 1999-10-28 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell(Cambridge,Mass.), 99, 1999
4D2G	Crystal structure of human PCNA in complex with p15 peptide Descriptor: P15, PROLIFERATING CELL NUCLEAR ANTIGEN Authors: DeBiasio, A, Ibanez, A, Mortuza, G, Molina, R, Cordeiro, T.N, Castillo, F, Villate, M, Merino, N, Lelli, M, Diercks, T, Luque, I, Bernardo, P, Montoya, G, Blanco, F.J. Deposit date: 2014-05-09 Release date: 2015-03-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structure of P15(Paf)-PCNA Complex and Implications for Clamp Sliding During DNA Replication and Repair. Nat.Commun., 6, 2015
4TRT	Deinococcus radiodurans DNA polymerase III subunit beta Descriptor: DNA polymerase III subunit beta Authors: Niiranen, L, Lian, K, Johnson, K.A, Moe, E. Deposit date: 2014-06-17 Release date: 2015-04-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of the DNA polymerase III beta subunit ( beta-clamp) from the extremophile Deinococcus radiodurans. Bmc Struct.Biol., 15, 2015
5B42	Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL. Descriptor: CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL Authors: Fukui, K, Baba, S, Kumasaka, T, Yano, T. Deposit date: 2016-03-30 Release date: 2016-07-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structural Features and Functional Dependency on beta-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL J.Biol.Chem., 291, 2016
8GNN	Crystal structure of the human RAD9-RAD1-HUS1-RAD17 complex Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Cell cycle checkpoint protein RAD17, ... Authors: Hara, K, Nagata, K, Iida, N, Hashimoto, H. Deposit date: 2022-08-24 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.119 Å) Cite: The 9-1-1 DNA clamp subunit RAD1 forms specific interactions with clamp loader RAD17, revealing functional implications for binding-protein RHINO. J.Biol.Chem., 299, 2023
5L2D	Streptococcal surface adhesin - CshA NR2 Descriptor: Surface-associated protein CshA Authors: Back, C.R, Race, P.R, Jenkinson, H.F. Deposit date: 2016-08-01 Release date: 2016-12-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.66 Å) Cite: The Streptococcus gordonii Adhesin CshA Protein Binds Host Fibronectin via a Catch-Clamp Mechanism. J. Biol. Chem., 292, 2017
1MMI	E. COLI DNA POLYMERASE BETA SUBUNIT Descriptor: DNA polymerase III, beta chain Authors: Oakley, A.J, Prosselkov, P, Wijffels, G, Beck, J.L, Wilce, M.C.J, Dixon, N.E. Deposit date: 2002-09-04 Release date: 2003-09-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.848 Å) Cite: Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III. Acta Crystallogr.,Sect.D, 59, 2003
2CHV	Replication Factor C ADPNP complex Descriptor: REPLICATION FACTOR C SMALL SUBUNIT Authors: Seybert, A, Singleton, M.R, Cook, N, Hall, D.R, Wigley, D.B. Deposit date: 2006-03-16 Release date: 2006-06-06 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (4 Å) Cite: Communication between Subunits within an Archaeal Clamp-Loader Complex. Embo J., 25, 2006
8CIX	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Griselimycin. Descriptor: ACETATE ION, Beta sliding clamp, CALCIUM ION, ... Authors: Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. Deposit date: 2023-02-11 Release date: 2023-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024
5FKU	cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex) Descriptor: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ... Authors: Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. Deposit date: 2015-10-20 Release date: 2015-11-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (8.34 Å) Cite: cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
8ITE	Crystal structure of pE301R from African swine fever virus Descriptor: Uncharacterized protein E301R Authors: Zhang, H, Li, Y.H. Deposit date: 2023-03-22 Release date: 2023-09-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication. Mbio, 14, 2023
2CHG	Replication Factor C domains 1 and 2 Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, REPLICATION FACTOR C SMALL SUBUNIT Authors: Seybert, A, Singleton, M.R, Cook, N, Hall, D.R, Wigley, D.B. Deposit date: 2006-03-14 Release date: 2006-06-06 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Communication between Subunits within an Archaeal Clamp-Loader Complex. Embo J., 25, 2006
2AVT	Crystal structure of the beta subunit from DNA polymerase of Streptococcus pyogenes Descriptor: DNA polymerase III beta subunit Authors: Argiriadi, M.A, Goedken, E.R, Bruck, I, O'donnell, M, Kuriyan, J. Deposit date: 2005-08-30 Release date: 2006-01-24 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. Bmc Struct.Biol., 6, 2006
7KZR	Structure of the human Fanconi Anaemia Core-UBE2T-ID complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZP	Structure of the human Fanconi anaemia Core complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZV	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in closed state Descriptor: DNA (29-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2021-03-24 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZT	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in intermediate state Descriptor: DNA (22-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2021-03-24 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZQ	Structure of the human Fanconi anaemia Core-ID complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZS	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in open state Descriptor: DNA (25-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2021-03-24 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
5AKB	MutS in complex with the N-terminal domain of MutL - crystal form 1 Descriptor: DNA MISMATCH REPAIR PROTEIN MUTL, DNA MISMATCH REPAIR PROTEIN MUTS, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Groothuizen, F.S, Winkler, I, Cristovao, M, Fish, A, Winterwerp, H.H.K, Reumer, A, Marx, A.D, Hermans, N, Nicholls, R.A, Murshudov, G.N, Lebbink, J.H.G, Friedhoff, P, Sixma, T.K. Deposit date: 2015-03-03 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.71 Å) Cite: MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA. Elife, 4, 2015
1GE8	PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) HOMOLOG FROM PYROCOCCUS FURIOSUS Descriptor: PROLIFERATION CELL NUCLEAR ANTIGEN Authors: Matsumiya, S, Ishino, Y, Morikawa, K. Deposit date: 2000-10-18 Release date: 2001-01-24 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci., 10, 2001
5FKV	cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon, tau complex) Descriptor: DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, DNA POLYMERASE III SUBUNIT ALPHA, ... Authors: Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. Deposit date: 2015-10-20 Release date: 2015-11-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (8.04 Å) Cite: cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5FKW	cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon) Descriptor: DNA POLYMERASE III ALPHA, DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, ... Authors: Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. Deposit date: 2015-10-20 Release date: 2015-11-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (7.3 Å) Cite: cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
2CHQ	Replication Factor C ADPNP complex Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, REPLICATION FACTOR C SMALL SUBUNIT Authors: Seybert, A, Singleton, M.R, Cook, N, Hall, D.R, Wigley, D.B. Deposit date: 2006-03-16 Release date: 2006-06-06 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Communication between Subunits within an Archaeal Clamp-Loader Complex. Embo J., 25, 2006

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