Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5L92
DownloadVisualize
BU of 5l92 by Molmil
The 2.1 A crystal structure of CYP109E1 from Bacillus megaterium in complex with corticosterone
Descriptor: CORTICOSTERONE, Cytochrome P450, MALONIC ACID, ...
Authors:Jozwik, I.K, Thunnissen, A.M.W.H.
Deposit date:2016-06-09
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of steroid binding and oxidation by the cytochrome P450 CYP109E1 from Bacillus megaterium.
Febs J., 283, 2016
4Q71
DownloadVisualize
BU of 4q71 by Molmil
Crystal Structure of Bradyrhizobium japonicum Proline Utilization A (PutA) Mutant D779W
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Proline dehydrogenase, ...
Authors:Tanner, J.J, Luo, M, Pemberton, T.A.
Deposit date:2014-04-23
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A.
Biochemistry, 53, 2014
6AFA
DownloadVisualize
BU of 6afa by Molmil
DJ-1 with isatin (low concentration)
Descriptor: CHLORIDE ION, ISATIN, Protein/nucleic acid deglycase DJ-1
Authors:Caaveiro, J.M.M, Tashiro, S, Tsumoto, K.
Deposit date:2018-08-08
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Discovery and Optimization of Inhibitors of the Parkinson's Disease Associated Protein DJ-1.
ACS Chem. Biol., 13, 2018
8FS1
DownloadVisualize
BU of 8fs1 by Molmil
CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11a (YD905)
Descriptor: 1,2-ETHANEDIOL, 5'-S-{2-[N'-(cyclohexylmethyl)carbamimidamido]ethyl}-N-(3-phenylpropyl)-5'-thioadenosine, DNA (5'-D(*AP*TP*GP*GP*GP*AP*CP*TP*TP*TP*TP*TP*GP*A)-3'), ...
Authors:Zhou, J, Horton, J.R, Cheng, X.
Deposit date:2023-01-09
Release date:2023-05-10
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Comparative Study of Adenosine Analogs as Inhibitors of Protein Arginine Methyltransferases and a Clostridioides difficile- Specific DNA Adenine Methyltransferase.
Acs Chem.Biol., 18, 2023
8I6Y
DownloadVisualize
BU of 8i6y by Molmil
Crystal structure of Arabidopsis thaliana LOX1
Descriptor: FE (III) ION, Linoleate 9S-lipoxygenase 1
Authors:Liu, X, Liu, L.
Deposit date:2023-01-30
Release date:2024-02-07
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:UV-B light signal mediates stomatal closure by activating the 9-lipoxygenase pathway
To Be Published
5S9L
DownloadVisualize
BU of 5s9l by Molmil
AUTOTAXIN, 4-[3-Oxo-3-(2-oxo-2,3-dihydro-benzooxazol-6-yl)-propyl]-piperazine-1-carboxylic acid 3,5-dichloro-benzyl ester, 1.90A, P212121, Rfree=19.1%
Descriptor: (3,5-dichlorophenyl)methyl 4-[3-oxo-3-(2-oxo-2,3-dihydro-1,3-benzoxazol-6-yl)propyl]piperazine-1-carboxylate, ACETATE ION, CALCIUM ION, ...
Authors:Stihle, M, Hunziker, D, Benz, J, Mattei, P, Rudolph, M.G.
Deposit date:2021-03-31
Release date:2022-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a rat Autotaxin complex
To be published
7ZIT
DownloadVisualize
BU of 7zit by Molmil
14-3-3 in complex with SARS-COV2 N phospho-peptide
Descriptor: 14-3-3 protein zeta/delta, ACETATE ION, BENZOIC ACID, ...
Authors:Eisenreichova, A, Boura, E.
Deposit date:2022-04-08
Release date:2022-10-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural basis for SARS-CoV-2 nucleocapsid (N) protein recognition by 14-3-3 proteins.
J.Struct.Biol., 214, 2022
5KXW
DownloadVisualize
BU of 5kxw by Molmil
Hen Egg White Lysozyme at 278K, Data set 6
Descriptor: Lysozyme C, SODIUM ION
Authors:Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
Deposit date:2016-07-20
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
7PX9
DownloadVisualize
BU of 7px9 by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state A)
Descriptor: AAA ATPase forming ring-shaped complexes, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Jomaa, A, Kavalchuk, M, Weber-Ban, E.
Deposit date:2021-10-08
Release date:2022-01-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
5S9M
DownloadVisualize
BU of 5s9m by Molmil
AUTOTAXIN, (3,5-dichlorophenyl)methyl (3aS,8aR)-2-(1H-benzotriazole-5-carbonyl)-1,3,3a,4,5,7,8,8a-octahydropyrrolo[3,4-d]azepine-6-carboxylate, 1.80A, P212121, Rfree=21.1%
Descriptor: (3,5-dichlorophenyl)methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate, ACETATE ION, CALCIUM ION, ...
Authors:Stihle, M, Hunziker, D, Benz, J, Mattei, P, Rudolph, M.G.
Deposit date:2021-03-31
Release date:2022-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of a rat Autotaxin complex
To be published
7PXA
DownloadVisualize
BU of 7pxa by Molmil
Open-gate mycobacterium 20S CP proteasome in complex MPA - global 3D refinement
Descriptor: AAA ATPase forming ring-shaped complexes, Proteasome subunit alpha, Proteasome subunit beta
Authors:Jomaa, A, Kavalchuk, M, Weber-Ban, E.
Deposit date:2021-10-08
Release date:2022-01-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
7ZME
DownloadVisualize
BU of 7zme by Molmil
CryoEM structure of mitochondrial complex I from Chaetomium thermophilum (state 2) - membrane arm
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Laube, E, Kuehlbrandt, W.
Deposit date:2022-04-19
Release date:2022-11-30
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum.
Sci Adv, 8, 2022
4QDM
DownloadVisualize
BU of 4qdm by Molmil
Crystal structure of N-terminal mutant (V1L) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
Descriptor: Alkaline thermostable endoxylanase, GLYCEROL, MAGNESIUM ION, ...
Authors:Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S.
Deposit date:2014-05-14
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.964 Å)
Cite:Structural insights into N-terminal to C-terminal interactions and implications for thermostability of a (beta/alpha)8-triosephosphate isomerase barrel enzyme
Febs J., 282, 2015
107D
DownloadVisualize
BU of 107d by Molmil
SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX
Descriptor: 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER, DNA (5'-D(*CP*CP*TP*TP*TP*TP*C)-3'), DNA (5'-D(*GP*AP*AP*AP*AP*GP*G)-3')
Authors:Lin, C.H, Patel, D.J.
Deposit date:1995-01-17
Release date:1995-05-08
Last modified:2024-03-13
Method:SOLUTION NMR
Cite:Solution structure of the covalent duocarmycin A-DNA duplex complex.
J.Mol.Biol., 248, 1995
7ZMG
DownloadVisualize
BU of 7zmg by Molmil
CryoEM structure of mitochondrial complex I from Chaetomium thermophilum (state 1)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Laube, E, Kuehlbrandt, W.
Deposit date:2022-04-19
Release date:2022-11-30
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum.
Sci Adv, 8, 2022
6ADI
DownloadVisualize
BU of 6adi by Molmil
Crystal Structures of IDH2 R140Q in complex with AG-881
Descriptor: 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine, Isocitrate dehydrogenase [NADP], mitochondrial, ...
Authors:Ma, R, Yun, C.H.
Deposit date:2018-08-01
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:Crystal structures of pan-IDH inhibitor AG-881 in complex with mutant human IDH1 and IDH2
Biochem. Biophys. Res. Commun., 503, 2018
5S9N
DownloadVisualize
BU of 5s9n by Molmil
AUTOTAXIN, [4-(trifluoromethoxy)phenyl]methyl (3aS,6aS)-2-(1H-benzotriazole-5-carbonyl)-1,3,3a,4,6,6a-hexahydropyrrolo[3,4-c]pyrrole-5-carboxylate, 1.80A, P212121, Rfree=23.3%
Descriptor: CALCIUM ION, CHLORIDE ION, Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, ...
Authors:Stihle, M, Hunziker, D, Benz, J, Mattei, P, Rudolph, M.G.
Deposit date:2021-03-31
Release date:2022-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of a rat Autotaxin complex
To be published
5LBB
DownloadVisualize
BU of 5lbb by Molmil
HIF prolyl hydroxylase 2 (PHD2/EGLN1) R396T variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)
Descriptor: BICARBONATE ION, Egl nine homolog 1, MANGANESE (II) ION, ...
Authors:Chowdhury, R, Schofield, C.J.
Deposit date:2016-06-15
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases.
Nat Commun, 7, 2016
7ZMB
DownloadVisualize
BU of 7zmb by Molmil
CryoEM structure of mitochondrial complex I from Chaetomium thermophilum (state 2)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Laube, E, Kuehlbrandt, W.
Deposit date:2022-04-19
Release date:2022-11-30
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum.
Sci Adv, 8, 2022
5S9S
DownloadVisualize
BU of 5s9s by Molmil
PanDDA analysis group deposition -- Crystal Structure of Trypanosoma brucei Trypanothione reductase in complex with Z2856434898
Descriptor: 1-(phenylmethyl)-4-pyrrol-1-yl-piperidine, BROMIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Fiorillo, A, Ilari, A.
Deposit date:2021-05-18
Release date:2022-06-15
Last modified:2023-03-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Innovative Approach for a Classic Target: Fragment Screening on Trypanothione Reductase Reveals New Opportunities for Drug Design.
Front Mol Biosci, 9, 2022
6AEA
DownloadVisualize
BU of 6aea by Molmil
Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 5 hours under fibrillation conditions
Descriptor: CHLORIDE ION, Lysozyme C, N,N,N',N'-tetramethylethane-1,2-diamine, ...
Authors:Seraj, Z, Seyedarabi, A.
Deposit date:2018-08-04
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.
Plos One, 15, 2020
5LBU
DownloadVisualize
BU of 5lbu by Molmil
Structure of the human quinone reductase 2 (NQO2) in complex with to CL097
Descriptor: 2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-4-amine, FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
Authors:Schneider, S, Gross, O.
Deposit date:2016-06-17
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Imiquimod Inhibits Mitochondrial Complex I and Induces K+ efflux-independent Nlrp3 Inflammasome Activation via Nek7
To Be Published
7PXC
DownloadVisualize
BU of 7pxc by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase in complex with open-gate 20S CP - composite map (state A)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Jomaa, A, Kavalchuk, M, Weber-Ban, E.
Deposit date:2021-10-08
Release date:2022-01-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
5SB7
DownloadVisualize
BU of 5sb7 by Molmil
Tubulin-todalam-18-complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Muehlethaler, T, Milanos, L, Ortega, J.A, Blum, T.B, Gioia, D, Prota, A.E, Cavalli, A, Steinmetz, M.O.
Deposit date:2021-07-08
Release date:2022-04-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Rational Design of a Novel Tubulin Inhibitor with a Unique Mechanism of Action.
Angew.Chem.Int.Ed.Engl., 61, 2022
5SB6
DownloadVisualize
BU of 5sb6 by Molmil
Tubulin-todalam-10-complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Muehlethaler, T, Milanos, L, Ortega, J.A, Blum, T.B, Gioia, D, Prota, A.E, Cavalli, A, Steinmetz, M.O.
Deposit date:2021-07-08
Release date:2022-04-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rational Design of a Novel Tubulin Inhibitor with a Unique Mechanism of Action.
Angew.Chem.Int.Ed.Engl., 61, 2022

222624

건을2024-07-17부터공개중

PDB statisticsPDBj update infoContact PDBjnumon