Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1HDI
DownloadVisualize
BU of 1hdi by Molmil
Pig muscle 3-PHOSPHOGLYCERATE KINASE complexed with 3-PG and MgADP.
Descriptor: 3-PHOSPHOGLYCERIC ACID, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Szilagyi, A.N, Ghosh, M, Garman, E, Vas, M.
Deposit date:2000-11-16
Release date:2001-02-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A 1.8 A resolution structure of pig muscle 3-phosphoglycerate kinase with bound MgADP and 3-phosphoglycerate in open conformation: new insight into the role of the nucleotide in domain closure.
J. Mol. Biol., 306, 2001
3WSQ
DownloadVisualize
BU of 3wsq by Molmil
Structure of HER2 with an Fab
Descriptor: Antibody Heavy Chain, Antibody Light Chain, Receptor tyrosine-protein kinase erbB-2
Authors:Fu, W.Y, Wang, Y.X, Zhou, L.J.
Deposit date:2014-03-20
Release date:2015-03-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insights into HER2 signaling from step-by-step optimization of anti-HER2 antibodies.
MAbs, 6, 2014
5K2F
DownloadVisualize
BU of 5k2f by Molmil
Structure of NNQQNY from yeast prion Sup35 with cadmium acetate determined by MicroED
Descriptor: ACETATE ION, CADMIUM ION, Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2016-05-18
Release date:2016-09-14
Last modified:2024-03-06
Method:ELECTRON CRYSTALLOGRAPHY (1 Å)
Cite:Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA, 113, 2016
2QHX
DownloadVisualize
BU of 2qhx by Molmil
Structure of Pteridine Reductase from Leishmania major complexed with a ligand
Descriptor: IODIDE ION, METHYL 1-(4-{[(2,4-DIAMINOPTERIDIN-6-YL)METHYL](METHYL)AMINO}BENZOYL)PIPERIDINE-4-CARBOXYLATE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Gibellini, F, Mcluskey, K, Tulloch, L, Hunter, W.N.
Deposit date:2007-07-03
Release date:2007-12-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Discovery of potent pteridine reductase inhibitors to guide antiparasite drug development.
Proc.Natl.Acad.Sci.USA, 105, 2008
5K2E
DownloadVisualize
BU of 5k2e by Molmil
Structure of NNQQNY from yeast prion Sup35 with zinc acetate determined by MicroED
Descriptor: ACETIC ACID, Eukaryotic peptide chain release factor GTP-binding subunit, ZINC ION
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2016-05-18
Release date:2016-09-14
Last modified:2024-03-06
Method:ELECTRON CRYSTALLOGRAPHY (1 Å)
Cite:Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA, 113, 2016
7L6Q
DownloadVisualize
BU of 7l6q by Molmil
Unliganded ELIC in styrene-maleic-acid nanodiscs at 2.5-Angstrom resolution
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, CARDIOLIPIN, Gamma-aminobutyric-acid receptor subunit beta-1
Authors:Grosman, C, Kumar, P.
Deposit date:2020-12-23
Release date:2021-06-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structure and function at the lipid-protein interface of a pentameric ligand-gated ion channel.
Proc.Natl.Acad.Sci.USA, 118, 2021
8JTL
DownloadVisualize
BU of 8jtl by Molmil
Structure of OY phytoplasma SAP05 binding with AtRpn10
Descriptor: 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein
Authors:Du, Y.X, Zhang, L.Y, Zheng, Q.Y.
Deposit date:2023-06-22
Release date:2023-07-12
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure basis for recognition of plant Rpn10 by phytoplasma SAP05 in ubiquitin-independent protein degradation.
Iscience, 27, 2024
2H64
DownloadVisualize
BU of 2h64 by Molmil
Crystal structure of a ternary ligand-receptor complex of BMP-2
Descriptor: Acvr2b protein, Bone morphogenetic protein 2, Bone morphogenetic protein receptor type IA
Authors:Mueller, T.D, Sebald, W, Weber, D.
Deposit date:2006-05-30
Release date:2007-04-10
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A silent H-bond can be mutationally activated for high-affinity interaction of BMP-2 and activin type IIB receptor.
Bmc Struct.Biol., 7, 2007
4HRH
DownloadVisualize
BU of 4hrh by Molmil
Crystal Structure of p11-Annexin A2(N-terminal) Fusion Protein in Complex with SMARCA3 Peptide
Descriptor: Helicase-like transcription factor, Protein S100-A10, Annexin A2, ...
Authors:Gao, P, Patel, D.J.
Deposit date:2012-10-27
Release date:2013-03-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:SMARCA3, a Chromatin-Remodeling Factor, Is Required for p11-Dependent Antidepressant Action.
Cell(Cambridge,Mass.), 152, 2013
8VDJ
DownloadVisualize
BU of 8vdj by Molmil
Crystal structure of SARS-CoV-2 3CL protease (3CLpro) as a covalent complex with EDP-235
Descriptor: 3C-like proteinase nsp5, 4,6,7-trifluoro-N-{(2S)-1-[(3R,5'R)-5'-(iminomethyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidin]-1'-yl]-4-methyl-1-oxopentan-2-yl}-N-methyl-1H-indole-2-carboxamide, THIOCYANATE ION
Authors:Cade, I.A, Rhodin, M.H.J.
Deposit date:2023-12-15
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:The small molecule inhibitor of SARS-CoV-2 3CLpro EDP-235 prevents viral replication and transmission in vivo.
Nat Commun, 15, 2024
8JTK
DownloadVisualize
BU of 8jtk by Molmil
Structure of AYWB phytoplasma SAP05 recognizing AtRpn10
Descriptor: 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein
Authors:Du, Y.X, Zhang, L.Y, Zheng, Q.Y.
Deposit date:2023-06-22
Release date:2023-07-19
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structure basis for recognition of plant Rpn10 by phytoplasma SAP05 in ubiquitin-independent protein degradation.
Iscience, 27, 2024
4HRG
DownloadVisualize
BU of 4hrg by Molmil
Crystal Structure of p11-Annexin A2(N-terminal) Fusion Protein in Complex with AHNAK1 Peptide
Descriptor: Neuroblast differentiation-associated protein AHNAK, Protein S100-A10
Authors:Gao, P, Patel, D.J.
Deposit date:2012-10-27
Release date:2013-03-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.0001 Å)
Cite:SMARCA3, a Chromatin-Remodeling Factor, Is Required for p11-Dependent Antidepressant Action.
Cell(Cambridge,Mass.), 152, 2013
8JOY
DownloadVisualize
BU of 8joy by Molmil
Plk1 polo-box domain bound to HPV4 L2 residues 251-257 with pThr255
Descriptor: Peptide from Minor capsid protein L2, Serine/threonine-protein kinase PLK1
Authors:Ku, B, Jung, S.
Deposit date:2023-06-09
Release date:2023-10-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structures of Plk1 Polo-Box Domain Bound to the Human Papillomavirus Minor Capsid Protein L2-Derived Peptide.
J.Microbiol, 61, 2023
1HLQ
DownloadVisualize
BU of 1hlq by Molmil
CRYSTAL STRUCTURE OF RHODOFERAX FERMENTANS HIGH POTENTIAL IRON-SULFUR PROTEIN REFINED TO 1.45 A
Descriptor: HIGH-POTENTIAL IRON-SULFUR PROTEIN, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Gonzalez, A, Ciurli, S, Benini, S.
Deposit date:2000-12-01
Release date:2003-06-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of Rhodoferax fermentans high-potential iron-sulfur protein solved by MAD.
Acta Crystallogr.,Sect.D, 59, 2003
3UAG
DownloadVisualize
BU of 3uag by Molmil
UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, ...
Authors:Bertrand, J.A, Auger, G, Martin, L, Fanchon, E, Blanot, D, Le Beller, D, Van Heijenoort, J, Dideberg, O.
Deposit date:1999-02-24
Release date:2000-02-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Determination of the MurD mechanism through crystallographic analysis of enzyme complexes.
J.Mol.Biol., 289, 1999
1EAF
DownloadVisualize
BU of 1eaf by Molmil
ATOMIC STRUCTURE OF THE CUBIC CORE OF THE PYRUVATE DEHYDROGENASE MULTIENZYME COMPLEX
Descriptor: DIHYDROLIPOYL-TRANSACETYLASE, SULFITE ION
Authors:Mattevi, A, Hol, W.G.J.
Deposit date:1992-12-16
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic analysis of substrate binding and catalysis in dihydrolipoyl transacetylase (E2p).
Biochemistry, 32, 1993
6QBG
DownloadVisualize
BU of 6qbg by Molmil
Crystal structure of human cathepsin D in complex with macrocyclic inhibitor 14
Descriptor: (3~{S},7~{S},8~{S})-8-(naphthalen-2-ylmethyl)-7-oxidanyl-3-propan-2-yl-1,4,9-triazacyclohenicosane-2,5,10-trione, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Brynda, J, Houstecka, R, Majer, P, Mares, M.
Deposit date:2018-12-21
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biomimetic Macrocyclic Inhibitors of Human Cathepsin D: Structure-Activity Relationship and Binding Mode Analysis.
J.Med.Chem., 63, 2020
5UW3
DownloadVisualize
BU of 5uw3 by Molmil
PCY1 in Complex with Follower Peptide
Descriptor: CACODYLATE ION, Peptide cyclase 1, Presegetalin A1
Authors:Chekan, J.R, Nair, S.K.
Deposit date:2017-02-20
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5UZW
DownloadVisualize
BU of 5uzw by Molmil
PCY1 G696Insertion Variant in Complex with Follower Peptide and the Covalent Inhibitor ZPP
Descriptor: CALCIUM ION, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, Peptide cyclase 1, ...
Authors:Chekan, J.R, Nair, S.K.
Deposit date:2017-02-27
Release date:2017-05-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KP8
DownloadVisualize
BU of 5kp8 by Molmil
Crystal Structure of the Curacin Biosynthetic Pathway HMG Synthase in Complex with Acetyl Donor-ACP
Descriptor: 4'-PHOSPHOPANTETHEINE, CurB, CurD, ...
Authors:Maloney, F.P, Smith, J.L.
Deposit date:2016-07-02
Release date:2016-08-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Anatomy of the beta-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate.
Proc.Natl.Acad.Sci.USA, 113, 2016
3X2V
DownloadVisualize
BU of 3x2v by Molmil
Michaelis-like complex of cAMP-dependent Protein Kinase Catalytic Subunit
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CARBONATE ION, MAGNESIUM ION, ...
Authors:Das, A, Langan, P, Gerlits, O, Kovalevsky, A.Y, Heller, W.T.
Deposit date:2015-01-02
Release date:2015-12-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Protein Kinase A Catalytic Subunit Primed for Action: Time-Lapse Crystallography of Michaelis Complex Formation.
Structure, 23, 2015
5DWE
DownloadVisualize
BU of 5dwe by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a 2-Chloro-substituted Triaryl-imine analog 4,4'-[(2-chlorophenyl)carbonimidoyl]diphenol
Descriptor: 4,4'-[(2-chlorophenyl)carbonimidoyl]diphenol, Estrogen receptor, Nuclear receptor coactivator 2
Authors:Nwachukwu, J.C, Wright, N.J, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
Deposit date:2015-09-22
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
5KP5
DownloadVisualize
BU of 5kp5 by Molmil
Crystal Structure of the Curacin Biosynthetic Pathway HMG Synthase
Descriptor: CurD, SULFATE ION
Authors:Maloney, F.P, Smith, J.L.
Deposit date:2016-07-02
Release date:2016-08-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Anatomy of the beta-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate.
Proc.Natl.Acad.Sci.USA, 113, 2016
3H7B
DownloadVisualize
BU of 3h7b by Molmil
Human Class I MHC HLA-A2 in complex with the Tel1p peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Borbulevych, O.Y, Baker, B.M.
Deposit date:2009-04-24
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:T cell receptor cross-reactivity directed by antigen-dependent tuning of peptide-MHC molecular flexibility.
Immunity, 31, 2009
3H9H
DownloadVisualize
BU of 3h9h by Molmil
Human Class I MHC HLA-A2(A150P) in complex with the Tel1p peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Borbulevych, O.Y, Baker, B.M.
Deposit date:2009-04-30
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:T cell receptor cross-reactivity directed by antigen-dependent tuning of peptide-MHC molecular flexibility.
Immunity, 31, 2009

225158

건을2024-09-18부터공개중

PDB statisticsPDBj update infoContact PDBjnumon