PDB: 97310 resultsInfo pagesStatus searchChemie searchBIRD

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8G9K	Geometrically programmable nanomaterial construction using regularized protein building blocks Descriptor: THR2 Authors: Bera, A.K, Huddy, T, Baker, D, Kang, A. Deposit date: 2023-02-21 Release date: 2024-03-13 Last modified: 2024-04-10 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024
7BGN	Crystal structure of MtHISN2-AMP complex, a bifunctional enzyme from the histidine biosynthetic pathway Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... Authors: Witek, W, Ruszkowski, M. Deposit date: 2021-01-08 Release date: 2021-05-19 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants. Sci Rep, 11, 2021
7BGM	Crystal structure of MtHISN2, a bifunctional enzyme from the histidine biosynthetic pathway Descriptor: Phosphoribosyl-AMP cyclohydrolase, ZINC ION Authors: Witek, W, Ruszkowski, M. Deposit date: 2021-01-08 Release date: 2021-05-19 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants. Sci Rep, 11, 2021
7BJ3	ScpA from Streptococcus pyogenes, S512A active site mutant Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, C5a peptidase, CALCIUM ION, ... Authors: Kagawa, T.F, O'Connell, M.R, Cooney, J.C. Deposit date: 2021-01-13 Release date: 2021-05-12 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Enzyme kinetic and binding studies identify determinants of specificity for the immunomodulatory enzyme ScpA, a C5a inactivating bacterial protease. Comput Struct Biotechnol J, 19, 2021
7T1J	Crystal structure of RUBISCO from Rhodospirillaceae bacterium BRH_c57 Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase Authors: Pereira, J.H, Liu, A.K, Shih, P.M, Adams, P.D. Deposit date: 2021-12-02 Release date: 2022-09-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Structural plasticity enables evolution and innovation of RuBisCO assemblies. Sci Adv, 8, 2022
6T7I	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Tesina, P, Buschauer, R, Cheng, J, Berninghausen, O, Becker, R, Beckmann, R. Deposit date: 2019-10-22 Release date: 2019-12-25 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts. Embo J., 39, 2020
7T1C	Crystal structure of RUBISCO from Sulfurivirga caldicuralii Descriptor: Ribulose-bisphosphate carboxylase Authors: Pereira, J.H, Liu, A.K, Shih, P.M, Adams, P.D. Deposit date: 2021-12-01 Release date: 2022-09-07 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structural plasticity enables evolution and innovation of RuBisCO assemblies. Sci Adv, 8, 2022
7SZU	Crystal structure of Pepper RNA aptamer in complex with HBC ligand and Fab BL3-6 Descriptor: 4-[(~{Z})-1-cyano-2-[4-[2-hydroxyethyl(methyl)amino]phenyl]ethenyl]benzenecarbonitrile, BL3-6 Fab heavy chain, BL3-6 Fab light chain, ... Authors: Rees, H.C, Piccirilli, J.A. Deposit date: 2021-11-29 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Structural Basis for Fluorescence Activation by Pepper RNA. Acs Chem.Biol., 17, 2022
7BJK	Crystal structure of the chloroplastic Fe superoxide dismutase PAP9 from Arabidopsis thaliana. Descriptor: Superoxide dismutase [Fe] 2, chloroplastic, ZINC ION Authors: Cobessi, D, Blanvillain, R, Pfannschmidt, T. Deposit date: 2021-01-14 Release date: 2021-07-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.25 Å) Cite: The Plastid-Encoded RNA Polymerase-Associated Protein PAP9 Is a Superoxide Dismutase With Unusual Structural Features. Front Plant Sci, 12, 2021
8KB6	Crystal Structure of Canine TNF-alpha Descriptor: Tumor necrosis factor Authors: Lee, C.C, Wang, A.H.-J. Deposit date: 2023-08-03 Release date: 2024-05-22 Method: X-RAY DIFFRACTION (1.850166 Å) Cite: Structure-based development of a canine TNF-alpha-specific antibody using adalimumab as a template. Protein Sci., 33, 2024
7E35	Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutant bound to compound S43 Descriptor: N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide, Non-structural protein 3, ZINC ION Authors: Liu, J, Wang, Y, Xu, X, Pan, L. Deposit date: 2021-02-08 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Development of potent and selective inhibitors targeting the papain-like protease of SARS-CoV-2. Cell Chem Biol, 28, 2021
6NJL	Architecture and subunit arrangement of native AMPA receptors Descriptor: 11B8 scFv, 15F1 Fab heavy chain, 15F1 Fab light chain, ... Authors: Gouaux, E, Zhao, Y. Deposit date: 2019-01-03 Release date: 2019-04-24 Last modified: 2021-05-05 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Architecture and subunit arrangement of native AMPA receptors elucidated by cryo-EM. Science, 364, 2019
7U55	Crystal structure of Thermoplasmatales archaeon heliorhodopsin at pH 4.5 Descriptor: CHLORIDE ION, DODECANE, Heliorhodopsin, ... Authors: Besaw, J.E, De Guzman, P, Miller, R.J.D, Ernst, O.P. Deposit date: 2022-03-01 Release date: 2022-09-07 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Low pH structure of heliorhodopsin reveals chloride binding site and intramolecular signaling pathway. Sci Rep, 12, 2022
7E6I	Glucose-6-phosphate dehydrogenase in complex with its substrate glucose-6-phosphate Descriptor: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-O-phosphono-beta-D-glucopyranose, ... Authors: Vu, H.H, Chang, J.H. Deposit date: 2021-02-22 Release date: 2021-04-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural basis for substrate recognition of glucose-6-phosphate dehydrogenase from Kluyveromyces lactis. Biochem.Biophys.Res.Commun., 553, 2021
4ABB	Fragments bound to bovine trypsin for the SAMPL challenge Descriptor: 1,2-ETHANEDIOL, 1-(1-BENZOTHIOPHEN-3-YL)METHANAMINE, CALCIUM ION, ... Authors: Newman, J, Peat, T.S. Deposit date: 2011-12-08 Release date: 2012-02-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.25 Å) Cite: The Dingo Dataset: A Comprehensive Set of Data for the Sampl Challenge. J.Comput.Aided Mol.Des., 26, 2012
5R1Q	PanDDA analysis group deposition -- Auto-refined data of Aar2/RNaseH for ground state model 41, DMSO-free Descriptor: A1 cistron-splicing factor AAR2, Pre-mRNA-splicing factor 8 Authors: Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G, Weiss, M.S. Deposit date: 2020-02-12 Release date: 2020-06-03 Last modified: 2021-03-10 Method: X-RAY DIFFRACTION (1.86 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
7BCY	X-ray structure of WDR5delta24 bound to the Kaposi's sarcoma herpesvirus LANA win motif peptide Descriptor: ORF 73, WD repeat-containing protein 5 Authors: McVey, C.E, Kaye, K.M. Deposit date: 2020-12-21 Release date: 2021-12-08 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.5 Å) Cite: MLL1 is regulated by KSHV LANA and is important for virus latency. Nucleic Acids Res., 49, 2021
7X4B	Crystal Structure of An Anti-CRISPR Protein Descriptor: Anti-CRISPR protein (AcrIIC1), SULFATE ION Authors: Hu, J, Zhang, S, Gao, J.Y, Liu, X, Liu, J. Deposit date: 2022-03-02 Release date: 2022-10-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.61 Å) Cite: A redox switch regulates the assembly and anti-CRISPR activity of AcrIIC1. Nat Commun, 13, 2022
7U0Y	Crystal structure of Pepper RNA aptamer in complex with HBC599 ligand and Fab BL3-6 Descriptor: 4-[(Z)-1-cyano-2-{6-[(2-hydroxyethyl)(methyl)amino]-1-benzothiophen-2-yl}ethenyl]benzonitrile, Fab BL3-6 heavy chain, Fab BL3-6 light chain, ... Authors: Rees, H.C, Piccirilli, J.A. Deposit date: 2022-02-19 Release date: 2022-08-31 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Structural Basis for Fluorescence Activation by Pepper RNA. Acs Chem.Biol., 17, 2022
7X1K	Crystal structure of the flagellar expression regulator DegU from Listeria monocytogenes Descriptor: Chemotaxis protein CheY Authors: Oh, H.B, Lee, S, Yoon, S.I. Deposit date: 2022-02-24 Release date: 2022-08-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural and biochemical analyses of the flagellar expression regulator DegU from Listeria monocytogenes. Sci Rep, 12, 2022
4ABH	Fragments bound to bovine trypsin for the SAMPL challenge Descriptor: 1,2-ETHANEDIOL, 1-(3-PYRROLIDIN-1-YLPHENYL)METHANAMINE, CALCIUM ION, ... Authors: Newman, J, Peat, T.S. Deposit date: 2011-12-08 Release date: 2012-02-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.25 Å) Cite: The Dingo Dataset: A Comprehensive Set of Data for the Sampl Challenge. J.Comput.Aided Mol.Des., 26, 2012
7X6Z	TRIM7 in complex with C-terminal peptide of NSP12 Descriptor: E3 ubiquitin-protein ligase TRIM7, peptide Authors: Zhang, H, Liang, X, Li, X.Z. Deposit date: 2022-03-08 Release date: 2022-08-10 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.43 Å) Cite: A C-terminal glutamine recognition mechanism revealed by E3 ligase TRIM7 structures. Nat.Chem.Biol., 18, 2022
7U8D	FKBP12 mutant V55G bound to Rapa*-3Z Descriptor: (3S,5Z,6R,7E,9R,10R,12R,14S,15E,17E,19E,21S,23S,26R,27R,30R,34aS)-5-(ethoxyimino)-9,27-dihydroxy-3-{(2R)-1-[(1S,3R,4R)-4-hydroxy-3-methoxycyclohexyl]propan-2-yl}-10,21-dimethoxy-6,8,12,14,20,26-hexamethyl-5,6,9,10,12,13,14,21,22,23,24,25,26,27,32,33,34,34a-octadecahydro-3H-23,27-epoxypyrido[2,1-c][1,4]oxazacyclohentriacontine-1,11,28,29(4H,31H)-tetrone, GLYCEROL, Peptidyl-prolyl cis-trans isomerase FKBP1A Authors: Wassarman, D.R, Shokat, K.M. Deposit date: 2022-03-08 Release date: 2022-09-21 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.39 Å) Cite: Tissue-restricted inhibition of mTOR using chemical genetics. Proc.Natl.Acad.Sci.USA, 119, 2022
7X70	TRIM7 in complex with C-terminal peptide of NSP8 Descriptor: E3 ubiquitin-protein ligase TRIM7, peptide Authors: Zhang, H, Liang, X, Li, X.Z. Deposit date: 2022-03-08 Release date: 2022-08-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.25 Å) Cite: A C-terminal glutamine recognition mechanism revealed by E3 ligase TRIM7 structures. Nat.Chem.Biol., 18, 2022
6T83	Structure of yeast disome (di-ribosome) stalled on poly(A) tract. Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Tesina, P, Buschauer, R, Cheng, J, Berninghausen, O, Becker, R, Beckmann, R. Deposit date: 2019-10-24 Release date: 2019-12-25 Last modified: 2020-02-12 Method: ELECTRON MICROSCOPY (4 Å) Cite: Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts. Embo J., 39, 2020

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