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6ZPC	Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dATP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DatZ, LITHIUM ION, ... Authors: Czernecki, D, Legrand, P, Delarue, M. Deposit date: 2020-07-08 Release date: 2021-03-03 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.2683593 Å) Cite: How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA. Nat Commun, 12, 2021
4EHS	Crystal structure of Helicobacter pylori DnaG Primase C terminal domain Descriptor: BETA-MERCAPTOETHANOL, DNA primase Authors: Abdul Rehman, S.A, Gourinath, S. Deposit date: 2012-04-04 Release date: 2013-05-01 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structure and mode of helicase binding of the C-terminal domain of primase from Helicobacter pylori J.Bacteriol., 195, 2013
6ZP9	Cyanophage S-2L Primase-Polymerase (PrimPol), AEP domain (PP-N190) Descriptor: CALCIUM ION, PrimPol AEP domain (PP-N190) Authors: Czernecki, D, Legrand, P, Delarue, M. Deposit date: 2020-07-08 Release date: 2021-03-03 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.50002229 Å) Cite: How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA. Nat Commun, 12, 2021
6ZPB	Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dA and two catalytic Co2+ ions Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, COBALT (II) ION, DatZ Authors: Czernecki, D, Legrand, P, Delarue, M. Deposit date: 2020-07-08 Release date: 2021-03-03 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.72097385 Å) Cite: How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA. Nat Commun, 12, 2021
8HJ4	CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex Descriptor: CRISPR-associated endonuclease Cas9, Phage protein, sgRNA Authors: Wang, Y, Sun, W. Deposit date: 2022-11-22 Release date: 2023-01-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Anti-CRISPR AcrIIC5 is a dsDNA mimic that inhibits type II-C Cas9 effectors by blocking PAM recognition. Nucleic Acids Res., 51, 2023
1N4B	Solution Structure of the undecamer CGAAAC*TTTCG Descriptor: 5'-D(*CP*GP*AP*AP*AP*CP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*D00*TP*TP*TP*CP*G)-3' Authors: Webba da Silva, M, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P. Deposit date: 2002-10-30 Release date: 2003-11-04 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution Structure of a DNA Duplex Containing Mispair-Aligned N4C-Ethyl-N4C Interstrand Cross-Linked Cytosines Biochemistry, 41, 2002
2R6E	Crystal Form B2 Descriptor: Replicative helicase, SULFATE ION Authors: Bailey, S, Eliason, W.K, Steitz, T.A. Deposit date: 2007-09-05 Release date: 2007-11-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (5.019 Å) Cite: Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science, 318, 2007
2R6D	Crystal Form B1 Descriptor: Replicative helicase Authors: Bailey, S, Eliason, W.K, Steitz, T.A. Deposit date: 2007-09-05 Release date: 2008-06-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science, 318, 2007
7RCF	Fourth stage reengineered variant of I-OnuI with stability enhancing substitutions Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L. Deposit date: 2021-07-07 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.233 Å) Cite: Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease To Be Published
7RCG	I-OnuI_e-hPD1-f final stage reengineered variant of I-OnuI Descriptor: CALCIUM ION, CHLORIDE ION, DNA (26-MER), ... Authors: Smiley, A.T, Werther, R.A, Stoddard, B.L. Deposit date: 2021-07-07 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.368 Å) Cite: Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease To Be Published
7RCD	Second stage reengineered variant of I-OnuI targeting human PD1 gene with activity enhancing substitutions Descriptor: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-c Authors: Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L. Deposit date: 2021-07-07 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.448 Å) Cite: Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease To Be Published
7RCE	Third stage reengineered variant of I-OnuI with specificity enhancing substitutions Descriptor: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-d, ... Authors: Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L. Deposit date: 2021-07-07 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease To Be Published
7RCC	First stage engineered variant of I-OnuI after initial reassembly Descriptor: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-b Authors: Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L. Deposit date: 2021-07-07 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease To Be Published
4KFR	Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with sulfate Descriptor: Genome packaging NTPase B204, MAGNESIUM ION, SULFATE ION Authors: Happonen, L.J, Oksanen, E, Goldman, A, Kajander, T, Butcher, S. Deposit date: 2013-04-27 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.956 Å) Cite: The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol., 87, 2013
8XAY	Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ... Authors: An, Q, Deng, Z. Deposit date: 2023-12-05 Release date: 2024-06-05 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex. Cell Res., 34, 2024
6CFY	Bosea sp Root 381 apo GapR structure Descriptor: UPF0335 protein ASE63_04290 Authors: Schumacherr, M.A. Deposit date: 2018-02-18 Release date: 2018-09-12 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A Bacterial Chromosome Structuring Protein Binds Overtwisted DNA to Stimulate Type II Topoisomerases and Enable DNA Replication. Cell, 175, 2018
5D5K	Crystal Structure NLS from human PARP-2 complexed with Importin alpha delta IBB Descriptor: Importin subunit alpha-1, Poly [ADP-ribose] polymerase 2 Authors: Riccio, A.A, Cingolani, G, Pascal, J.M. Deposit date: 2015-08-10 Release date: 2016-06-22 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: PARP-2 domain requirements for DNA damage-dependent activation and localization to sites of DNA damage. Nucleic Acids Res., 44, 2016
1XI1	Phi29 DNA polymerase ssDNA complex, monoclinic crystal form Descriptor: 5'-D(P*TP*TP*TP*TP*T)-3', DNA polymerase, MAGNESIUM ION Authors: Kamtekar, S, Berman, A.J, Wang, J, Lazaro, J.M, de Vega, M, Blanco, L, Salas, M, Steitz, T.A. Deposit date: 2004-09-21 Release date: 2004-12-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Correction of X-ray intensities from single crystals containing lattice-translocation defects Acta Crystallogr.,Sect.D, 61, 2005
4FGN	Crystal structure of the SV40 large T-antigen origin bining domain bound to Site I DNA Descriptor: Large T antigen, Site I DNA Authors: Meinke, G, Bohm, A, Bullock, P.A. Deposit date: 2012-06-04 Release date: 2013-01-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Analysis of the Costructure of the Simian Virus 40 T-Antigen Origin Binding Domain with Site I Reveals a Correlation between GAGGC Spacing and Spiral Assembly. J.Virol., 87, 2013
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
4KFT	Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with ATP-gammaS Descriptor: CHLORIDE ION, CITRATE ANION, Genome packaging NTPase B204, ... Authors: Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S. Deposit date: 2013-04-27 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.241 Å) Cite: The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol., 87, 2013
4KFU	Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMPPCP Descriptor: CITRATE ANION, Genome packaging NTPase B204, MAGNESIUM ION, ... Authors: Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S. Deposit date: 2013-04-27 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.892 Å) Cite: The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol., 87, 2013
1G5L	CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION Descriptor: 2-PHOSPHOGLYCOLIC ACID, 5'-D(*CP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3', ... Authors: Hoehn, S.T, Junker, H.-D, Bunt, R.C, Turner, C.J, Stubbe, J. Deposit date: 2000-11-01 Release date: 2001-06-06 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage. Biochemistry, 40, 2001
5EZF	Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca) Descriptor: CALCIUM ION, Complementary strand, Pribnow box template strand Authors: Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I. Deposit date: 2015-11-26 Release date: 2016-05-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography. Nucleic Acids Res., 44, 2016
1XX8	NMR Structure of the W24A Mutant of the Hyperthermophile Sac7d Protein Descriptor: Sac7d Authors: Bedell, J.L, Edmondson, S.P, Shriver, J.W. Deposit date: 2004-11-04 Release date: 2005-02-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Role of a surface tryptophan in defining the structure, stability, and DNA binding of the hyperthermophile protein sac7d Biochemistry, 44, 2005

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