PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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7E29	Crystal Structure of Saccharomyces cerevisiae Ioc4 PWWP domain fused with MBP Descriptor: Maltose/maltodextrin-binding periplasmic protein,ISWI one complex protein 4, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose Authors: Li, J, Smolle, M, Liang, H, Liu, Y. Deposit date: 2021-02-05 Release date: 2022-02-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.303 Å) Cite: H3K36 methylation and DNA-binding both promote Ioc4 recruitment and Isw1b remodeler function. Nucleic Acids Res., 50, 2022
3BD5	Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COBALT (II) ION, catalytic antibody Authors: Park, S.K, Kim, J.S. Deposit date: 2007-11-14 Release date: 2008-04-01 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals Proteins, 71, 2008
4KFS	Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMP Descriptor: ADENOSINE MONOPHOSPHATE, CITRATE ANION, Genome packaging NTPase B204, ... Authors: Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S. Deposit date: 2013-04-27 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.946 Å) Cite: The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol., 87, 2013
5KL4	Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with formylated DNA Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5FC)P*GP*T)-3'), ... Authors: Hashimoto, H, Cheng, X. Deposit date: 2016-06-23 Release date: 2016-09-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.783 Å) Cite: Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res., 44, 2016
5KL5	Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with carboxylated DNA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(1CC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ... Authors: Hashimoto, H, Cheng, X. Deposit date: 2016-06-23 Release date: 2016-09-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.289 Å) Cite: Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res., 44, 2016
5KL2	Wilms Tumor Protein (WT1) ZnF2-4 in complex with DNA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... Authors: Hashimoto, H, Cheng, X. Deposit date: 2016-06-23 Release date: 2016-09-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.692 Å) Cite: Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res., 44, 2016
5KL3	Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with DNA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... Authors: Hashimoto, H, Cheng, X. Deposit date: 2016-06-23 Release date: 2016-09-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.449 Å) Cite: Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res., 44, 2016
4KFU	Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMPPCP Descriptor: CITRATE ANION, Genome packaging NTPase B204, MAGNESIUM ION, ... Authors: Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S. Deposit date: 2013-04-27 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.892 Å) Cite: The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol., 87, 2013
5XUT	Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TCTA PAM) Descriptor: 1,2-ETHANEDIOL, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*CP*TP*A)-3'), ... Authors: Yamano, T, Nishimasu, H, Ishitani, R, Nureki, O. Deposit date: 2017-06-26 Release date: 2017-08-09 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1. Mol. Cell, 67, 2017
3GGI	Locating monovalent cations in one turn of G/C rich B-DNA Descriptor: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, THALLIUM (I) ION Authors: Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D. Deposit date: 2009-02-28 Release date: 2010-03-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Locating monovalent cations in one turn of G/C rich B-DNA To be Published
3GGK	Locating monovalent cations in one turn of G/C rich B-DNA Descriptor: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, RUBIDIUM ION Authors: Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D. Deposit date: 2009-02-28 Release date: 2010-03-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (0.87 Å) Cite: Locating monovalent cations in one turn of G/C rich B-DNA To be Published
1CUK	ESCHERICHIA COLI RUVA PROTEIN AT PH 4.9 AND ROOM TEMPERATURE Descriptor: RUVA PROTEIN Authors: Rafferty, J.B, Rice, D.W. Deposit date: 1996-08-28 Release date: 1997-10-22 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction. Science, 274, 1996
6IMC	Crystal Structure of ALKBH1 in complex with Mn(II) and N-Oxalylglycine Descriptor: MANGANESE (II) ION, N-OXALYLGLYCINE, Nucleic acid dioxygenase ALKBH1 Authors: Zhang, M, Yang, S, Zhao, W, Li, H. Deposit date: 2018-10-22 Release date: 2020-01-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA. Cell Res., 30, 2020
2MH3	NMR structure of the basic helix-loop-helix region of the transcriptional repressor HES-1 Descriptor: Transcription factor HES-1 Authors: Wienk, H, Popovic, M, Coglievina, M, Boelens, R, Pongor, S, Pintar, A. Deposit date: 2013-11-15 Release date: 2014-02-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The basic helix-loop-helix region of the transcriptional repressor hairy and enhancer of split 1 is preorganized to bind DNA. Proteins, 82, 2014
4PU5	Shewanella oneidensis Toxin Antitoxin System Toxin Protein HipA Bound with AMPPNP and Mg Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ... Authors: Wen, Y, Behiels, E, Felix, J, Elegheert, J, Vergauwen, B, Devreese, B, Savvides, S. Deposit date: 2014-03-12 Release date: 2014-08-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.834 Å) Cite: The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic Acids Res., 42, 2014
4Q0W	he catalytic core of Rad2 in complex with DNA substrate (complex II) Descriptor: CALCIUM ION, DNA (5'-D(*TP*TP*AP*GP*GP*TP*GP*GP*AP*CP*GP*GP*AP*TP*CP*AP*TP*T)-3'), DNA (5'-D(*TP*TP*TP*GP*AP*TP*CP*CP*GP*TP*CP*CP*AP*CP*CP*TP*TP*T)-3'), ... Authors: Mietus, M, Nowak, E, Jaciuk, M, Kustosz, P, Nowotny, M. Deposit date: 2014-04-02 Release date: 2014-08-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding. Nucleic Acids Res., 42, 2014
1KKW	NMR Solution Structure of d(CCATGCGTGG)2, G-T mismatch structure Descriptor: 5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3' Authors: Isaacs, R.J, Spielmann, H.P. Deposit date: 2001-12-10 Release date: 2002-06-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural differences in the NOE-derived structure of G-T mismatched DNA relative to normal DNA are correlated with differences in (13)C relaxation-based internal dynamics. J.Mol.Biol., 319, 2002
8TWQ	Structure of bacteriophage lambda RexA protein Descriptor: CADMIUM ION, Protein rexA, SULFATE ION Authors: Adams, M.C, Chappie, J.S, Schiltz, C.J. Deposit date: 2023-08-21 Release date: 2024-04-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The crystal structure of bacteriophage lambda RexA provides novel insights into the DNA binding properties of Rex-like phage exclusion proteins. Nucleic Acids Res., 52, 2024
2V1X	Crystal structure of human RECQ-like DNA helicase Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT DNA HELICASE Q1, ... Authors: Pike, A.C.W, Shrestha, B, Burgess-Brown, N, King, O, Ugochukwu, E, Watt, S, Edwards, A, Arrowsmith, C.H, Weigelt, J, Sundstrom, M, Gileadi, O. Deposit date: 2007-05-30 Release date: 2007-07-03 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the Human Recq1 Helicase Reveals a Putative Strand-Separation Pin. Proc.Natl.Acad.Sci.USA, 106, 2009
5NRS	Human DNMT3B PWWP domain in complex with N,N-bis(2-hydroxypropyl)ethanolamine Descriptor: (2~{S})-1-[2-hydroxyethyl-[(2~{S})-2-oxidanylpropyl]amino]propan-2-ol, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION Authors: Rondelet, G, Wouters, J. Deposit date: 2017-04-25 Release date: 2018-05-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors To be published
7VP6	Structure of a transcription factor and DNA complex Descriptor: Transcription factor TCP15 Authors: Zhang, Y, Xu, Y.P, Wang, B, Su, X.D. Deposit date: 2021-10-15 Release date: 2022-10-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Structural basis for DNA recognition by TCP transcription factors To Be Published
5NRR	Human DNMT3B PWWP domain in complex with 5-[(2-Hydroxyethyl)(propyl)amino]-1-pentanol Descriptor: 5-[2-hydroxyethyl(propyl)amino]pentan-1-ol, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION Authors: Rondelet, G, Wouters, J. Deposit date: 2017-04-25 Release date: 2018-05-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors To be published
2KSS	NMR structure of Myxococcus xanthus antirepressor CarS1 Descriptor: Carotenogenesis protein carS Authors: Jimenez, M, Gonzalez, C, Padmanabhan, S, Leon, E, Navarro-Aviles, G, Elias-Arnanz, M. Deposit date: 2010-01-13 Release date: 2010-05-12 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix. Nucleic Acids Res., 38, 2010
6H2J	Crystal structure of the HsdR subunit of the EcoR124I restriction enzyme with the C-terminal domain Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Type I restriction enzyme R Protein Authors: Grinkevich, P, Mesters, J.R, Ettrich, R.H. Deposit date: 2018-07-13 Release date: 2018-08-08 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding. J. Biol. Chem., 293, 2018
5NRV	Human DNMT3B PWWP domain in complex with 6-dipropylamino-1-hexanol Descriptor: 6-dipropylamino-1-hexanol, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION Authors: Rondelet, G, Wouters, J. Deposit date: 2017-04-25 Release date: 2018-06-13 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.075 Å) Cite: Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors To be published

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