PDB: 5689 resultsInfo pagesStatus searchChemie searchBIRD

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4XTI	Structure of IMP dehydrogenase of Ashbya gossypii with IMP bound to the active site Descriptor: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase, POTASSIUM ION Authors: Buey, R.M, Ledesma-Amaro, R, Balsera, M, de Pereda, J.M, Revuelta, J.L. Deposit date: 2015-01-23 Release date: 2015-07-22 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Increased riboflavin production by manipulation of inosine 5'-monophosphate dehydrogenase in Ashbya gossypii. Appl.Microbiol.Biotechnol., 99, 2015
4XWU	Structure of the IMP dehydrogenase from Ashbya gossypii Descriptor: Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase Authors: Buey, R.M, Ledesma-Amaro, R, Balsera, M, de Pereda, J.M, Revuelta, J.L. Deposit date: 2015-01-29 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Increased riboflavin production by manipulation of inosine 5'-monophosphate dehydrogenase in Ashbya gossypii. Appl.Microbiol.Biotechnol., 99, 2015
8Q63	Cryo-EM structure of IC8', a second state of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2023-08-10 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
3LXE	Human Carbonic Anhydrase I in complex with topiramate Descriptor: Carbonic anhydrase 1, ZINC ION, [(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate Authors: Alterio, V, De Simone, G, Monti, S.M, Truppo, E. Deposit date: 2010-02-25 Release date: 2010-07-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The first example of a significant active site conformational rearrangement in a carbonic anhydrase-inhibitor adduct: the carbonic anhydrase I-topiramate complex. Org.Biomol.Chem., 2010
1CHU	STRUCTURE OF L-ASPARTATE OXIDASE: IMPLICATIONS FOR THE SUCCINATE DEHYDROGENASE/ FUMARATE REDUCATSE FAMILY Descriptor: PROTEIN (L-ASPARTATE OXIDASE) Authors: Mattevi, A. Deposit date: 1999-03-29 Release date: 1999-06-23 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of L-aspartate oxidase: implications for the succinate dehydrogenase/fumarate reductase oxidoreductase family. Structure Fold.Des., 7, 1999
8UJA	T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks Descriptor: T33-fn10: engineered DrsE like sulfur reductase, T33-fn10: engineered enoyl-CoA hydratase/isomerase Authors: Meador, K, Sawaya, M.R, Yeates, T.O. Deposit date: 2023-10-11 Release date: 2024-03-06 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (6 Å) Cite: A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
4IGH	High resolution crystal structure of human dihydroorotate dehydrogenase bound with 4-quinoline carboxylic acid analog Descriptor: 3-[decyl(dimethyl)ammonio]propane-1-sulfonate, 6-fluoro-2-[2-methyl-4-phenoxy-5-(propan-2-yl)phenyl]quinoline-4-carboxylic acid, Dihydroorotate dehydrogenase (quinone), ... Authors: Deng, X, Das, P, Fontoura, B.M.A, Phillips, M.A, De Brabander, J.K. Deposit date: 2012-12-17 Release date: 2013-08-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.3 Å) Cite: SAR Based Optimization of a 4-Quinoline Carboxylic Acid Analog with Potent Anti-Viral Activity. ACS MED.CHEM.LETT., 4, 2013
6EBS	Crystal structure of Leishmania major dihydroorotate dehydrogenase mutant H174A in complex with orotate Descriptor: Dihydroorotate dehydrogenase (fumarate), FLAVIN MONONUCLEOTIDE, GLYCEROL, ... Authors: Reis, R.A.G, Pinheiro, M.P, de Souza, A.L, Hunter, W.N, Nonato, M.C. Deposit date: 2018-08-07 Release date: 2019-08-21 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Crystal structure of Leishmania major dihydroorotate dehydrogenase mutant H174A in complex with orotate To Be Published
7JMH	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 35 - State 4 (S4) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMI	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 29 - State 3 (S3) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMF	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 42 - State 6 (S6) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMJ	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 37 - State 5 (S5) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMG	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 22 - State 2 (S2) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
6PV6	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2019-07-19 Release date: 2020-08-12 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
2RAS	Crystal structure of a putative tetr/acrr family transcriptional regulator (saro_0558) from novosphingobium aromaticivorans dsm at 1.80 A resolution Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Transcriptional regulator, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-09-17 Release date: 2007-10-16 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of predicted transcriptional regulator of TetR/AcrR family (YP_495839.1) from Novosphingobium aromaticivorans DSM 12444 at 1.80 A resolution To be published
1R76	Structure of a pectate lyase from Azospirillum irakense Descriptor: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ... Authors: Novoa de Armas, H, Verboven, C, De Ranter, C, Desair, J, Vande Broek, A, Vanderleyden, J, Rabijns, A. Deposit date: 2003-10-20 Release date: 2004-06-01 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Azospirillum irakense pectate lyase displays a toroidal fold. Acta Crystallogr.,Sect.D, 60, 2004
3B8L	CRYSTAL STRUCTURE OF A PUTATIVE AROMATIC RING HYDROXYLASE (SARO_3538) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM AT 1.75 A RESOLUTION Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-11-01 Release date: 2007-11-27 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of NTF2-like protein of unknown function (YP_001165924.1) from Novosphingobium aromaticivorans DSM 12444 at 1.75 A resolution To be published
3BWX	Crystal structure of an alpha/beta hydrolase (YP_496220.1) from Novosphingobium aromaticivorans DSM 12444 at 1.50 A resolution Descriptor: 1,2-ETHANEDIOL, Alpha/beta hydrolase, CALCIUM ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-01-10 Release date: 2008-01-22 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure of an alpha/beta hydrolase (YP_496220.1) from Novosphingobium aromaticivorans DSM 12444 at 1.50 A resolution To be published
4P3X	Structure of the Fe4S4 quinolinate synthase NadA from Thermotoga maritima Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, IRON/SULFUR CLUSTER, Quinolinate synthase A, ... Authors: Cherrier, M.V, Chan, A, Darnault, C, Reichmann, D, Amara, P, Ollagnier de Choudens, S, Fontecilla-Camps, J.C. Deposit date: 2014-03-10 Release date: 2014-04-02 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.65 Å) Cite: The crystal structure of Fe4S4 quinolinate synthase unravels an enzymatic dehydration mechanism that uses tyrosine and a hydrolase-type triad. J.Am.Chem.Soc., 136, 2014
3EJV	Crystal structure of a cystatin-like protein (saro_2766) from novosphingobium aromaticivorans dsm at 1.40 A resolution Descriptor: 1,2-ETHANEDIOL, TRIETHYLENE GLYCOL, UNKNOWN LIGAND, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-09-18 Release date: 2008-09-30 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal structure of protein of unknown function with a cystatin-like fold (YP_498036.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.40 A resolution To be published
3EBY	Crystal structure of the beta subunit of a putative aromatic-ring-hydroxylating dioxygenase (YP_001165631.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.75 A resolution Descriptor: CHLORIDE ION, beta subunit of a putative Aromatic-ring-hydroxylating dioxygenase Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-08-28 Release date: 2008-09-09 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of the beta subunit of a putative aromatic-ring-hydroxylating dioxygenase (YP_001165631.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.75 A resolution To be published
3ES1	Crystal structure of protein with a cupin-like fold and unknown function (YP_001165807.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.91 A resolution Descriptor: CHLORIDE ION, Cupin 2, conserved barrel domain protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-10-03 Release date: 2008-10-14 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Crystal structure of protein with a cupin-like fold and unknown function (YP_001165807.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.91 A resolution To be published
3M7A	Crystal structure of Saro_0823 (YP_496102.1) a protein of unknown function from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.22 A resolution Descriptor: 1,2-ETHANEDIOL, uncharacterized protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2010-03-16 Release date: 2010-04-21 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.22 Å) Cite: Crystal structure of Saro_0823 (YP_496102.1) a protein of unknown function from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.22 A resolution To be Published
3CJY	Crystal structure of putative thioesterase (YP_496845.1) from Novosphingobium aromaticivorans DSM 12444 at 1.70 A resolution Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-03-14 Release date: 2008-04-01 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of putative thioesterase (YP_496845.1) from Novosphingobium aromaticivorans DSM 12444 at 1.70 A resolution To be published
3FF2	Crystal structure of an uncharacterized cystatin fold protein (saro_2299) from novosphingobium aromaticivorans dsm at 1.90 A resolution Descriptor: ACETATE ION, uncharacterized cystatin fold protein (YP_497570.1) from NTF2 superfamily Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-12-01 Release date: 2008-12-16 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of uncharacterized cystatin fold protein (YP_497570.1) from NTF2 superfamily (YP_497570.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.90 A resolution To be published

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