Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YEQ
DownloadVisualize
BU of 2yeq by Molmil
Structure of PhoD
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ALKALINE PHOSPHATASE D, ...
Authors:Lillington, J.E.D, Rodriguez, F, Roversi, P, Johnson, S.J, Berks, B, Lea, S.M.
Deposit date:2011-03-30
Release date:2012-04-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal Structure of the Bacillus Subtilis Phosphodiesterase Phod Reveals an Iron and Calcium-Containing Active Site.
J.Biol.Chem., 289, 2014
6DF2
DownloadVisualize
BU of 6df2 by Molmil
Improved anti-phosphotyrosine antibody 4G10-S5-4D5 Fab complexed with phosphotyrosine peptide
Descriptor: Anti-phosphotyrosine antibody c310-4D5 heavy chain, Anti-phosphotyrosine antibody c310-4D5 light chain, LEU-PTR-LEU
Authors:Mou, K, Leung, K, Wells, J.A.
Deposit date:2018-05-13
Release date:2018-11-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Engineering Improved Antiphosphotyrosine Antibodies Based on an Immunoconvergent Binding Motif.
J. Am. Chem. Soc., 140, 2018
2YLM
DownloadVisualize
BU of 2ylm by Molmil
Mechanism of USP7 (HAUSP) activation by its C-terminal ubiquitin-like domain (HUBL) and allosteric regulation by GMP-synthetase.
Descriptor: CHLORIDE ION, UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7
Authors:Faesen, A.C, Perrakis, A, Sixma, T.K.
Deposit date:2011-06-03
Release date:2011-10-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mechanism of Usp7/Hausp Activation by its C- Terminal Ubiquitin-Like Domain and Allosteric Regulation by Gmp-Synthetase
Mol.Cell, 44, 2011
2YQ4
DownloadVisualize
BU of 2yq4 by Molmil
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus
Descriptor: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE
Authors:Holton, S.J, Anandhakrishnan, M, Geerlof, A, Wilmanns, M.
Deposit date:2012-11-05
Release date:2012-11-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus
J.Struct.Biol., 181, 2013
6DTF
DownloadVisualize
BU of 6dtf by Molmil
Crystal structure of Haemophilus influenzae OppA complex with KKK
Descriptor: LYS-LYS-LYS, Periplasmic oligopeptide-binding protein, SULFATE ION
Authors:Tanaka, K.J, Pinkett, H.W.
Deposit date:2018-06-16
Release date:2018-11-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
2YDK
DownloadVisualize
BU of 2ydk by Molmil
Discovery of Checkpoint Kinase Inhibitor AZD7762 by Structure Based Design and Optimization of Thiophene Carboxamide Ureas
Descriptor: 2-(CARBAMOYLAMINO)-5-PHENYL-N-[(3S)-PIPERIDIN-3-YL]THIOPHENE-3-CARBOXAMIDE, GLYCEROL, SERINE/THREONINE-PROTEIN KINASE CHK1, ...
Authors:Read, J.A, Breed, J, Haye, H, McCall, E, Rowsell, S, Vallentine, A, White, A.
Deposit date:2011-03-22
Release date:2012-04-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of Checkpoint Kinase Inhibitor (S)-5-(3-Fluorophenyl)-N-(Piperidin-3-Yl)-3-Ureidothiophene-2-Carboxamide (Azd7762) by Structure-Based Design and Optimization of Thiophenecarboxamide Ureas.
J.Med.Chem., 55, 2012
6X0H
DownloadVisualize
BU of 6x0h by Molmil
Structure of oxidized SidA ornithine hydroxylase with the FAD in the "out" conformation
Descriptor: ACETATE ION, CALCIUM ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tanner, J.J, Campbell, A.C.
Deposit date:2020-05-15
Release date:2020-08-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.087 Å)
Cite:Trapping conformational states of a flavin-dependent N -monooxygenase in crystallo reveals protein and flavin dynamics.
J.Biol.Chem., 295, 2020
6DVK
DownloadVisualize
BU of 6dvk by Molmil
Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program - construct 6 (miniTTR 6)
Descriptor: COBALT (II) ION, MAGNESIUM ION, RNA (95-MER)
Authors:Eiler, D.R, Yesselman, J.D, Costantino, D.A, Das, R, Kieft, J.S.
Deposit date:2018-06-24
Release date:2019-06-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Computational design of three-dimensional RNA structure and function.
Nat Nanotechnol, 14, 2019
6DIX
DownloadVisualize
BU of 6dix by Molmil
NFVFGT segment from Human Immunoglobulin Light-Chain Variable Domain, Residues 98-103, assembled as an amyloid fibril
Descriptor: NFVFGT Immunoglobulin Light-Chain Variable Domain
Authors:Brumshtein, B, Esswein, S.R, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2018-05-23
Release date:2018-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Identification of two principal amyloid-driving segments in variable domains of Ig light chains in systemic light-chain amyloidosis.
J. Biol. Chem., 293, 2018
6WLF
DownloadVisualize
BU of 6wlf by Molmil
Phosphoethanolamine Methyltransferase from the Pine Wilt Nematode Bursaphelenchus xylophilus
Descriptor: PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, Phosphoethanolamine N-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lee, S.G, Jez, J.M.
Deposit date:2020-04-20
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and biochemical analysis of phosphoethanolamine methyltransferase from the pine wilt nematode Bursaphelenchus xylophilus.
Mol.Biochem.Parasitol., 238, 2020
2YR3
DownloadVisualize
BU of 2yr3 by Molmil
Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle
Descriptor: Myosin light chain kinase, smooth muscle
Authors:Qin, X.R, Kurosaki, C, Yoshida, M, Hayahsi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle
To be Published
2YRV
DownloadVisualize
BU of 2yrv by Molmil
Solution structure of the RBB1NT domain of human RB(retinoblastoma)-binding protein 1
Descriptor: AT-rich interactive domain-containing protein 4A
Authors:Nameki, N, Saito, K, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the RBB1NT domain of human RB(retinoblastoma)-binding protein 1
To be Published
6WF7
DownloadVisualize
BU of 6wf7 by Molmil
Methylmalonyl-CoA epimerase in complex with methylmalonyl-CoA and NH4+
Descriptor: (S)-Methylmalonyl-Coenzyme A, AMMONIUM ION, METHYLMALONYL-COENZYME A, ...
Authors:Stunkard, L.M, Benjamin, A.B, Bower, J.B, Huth, T.J, Lohman, J.R.
Deposit date:2020-04-03
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Substrate Enolate Intermediate and Mimic Captured in the Active Site of Streptomyces coelicolor Methylmalonyl-CoA Epimerase.
Chembiochem, 23, 2022
6WM7
DownloadVisualize
BU of 6wm7 by Molmil
Periplasmic EDTA-binding protein EppA, orthorhombic
Descriptor: 1,2-ETHANEDIOL, Extracellular solute-binding protein, family 5, ...
Authors:Lewis, K.M, Greene, C.L, Sattler, S.A, Xun, L, Kang, C.
Deposit date:2020-04-20
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:The Structural Basis of the Binding of Various Aminopolycarboxylates by the Periplasmic EDTA-Binding Protein EppA from Chelativorans sp. BNC1.
Int J Mol Sci, 21, 2020
2YSF
DownloadVisualize
BU of 2ysf by Molmil
Solution structure of the fourth WW domain from the human E3 ubiquitin-protein ligase Itchy homolog, ITCH
Descriptor: E3 ubiquitin-protein ligase Itchy homolog
Authors:Ohnishi, S, Li, H, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the fourth WW domain from the human E3 ubiquitin-protein ligase Itchy homolog, ITCH
To be Published
6WFI
DownloadVisualize
BU of 6wfi by Molmil
Methylmalonyl-CoA epimerase in complex with 2-nitronate-propionyl-CoA
Descriptor: CHLORIDE ION, COBALT (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Stunkard, L.M, Benjamin, A.B, Bower, J.B, Huth, T.J, Lohman, J.R.
Deposit date:2020-04-03
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Substrate Enolate Intermediate and Mimic Captured in the Active Site of Streptomyces coelicolor Methylmalonyl-CoA Epimerase.
Chembiochem, 23, 2022
2YSK
DownloadVisualize
BU of 2ysk by Molmil
Crystal structure of a hypothetical protein TTHA1432 from Thermus thermophilus
Descriptor: Hypothetical protein TTHA1432, SULFATE ION
Authors:Okamoto, A, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2008-04-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a hypothetical protein TTHA1432 from Thermus thermophilus
To be Published
2YSV
DownloadVisualize
BU of 2ysv by Molmil
Solution structure of C2H2 type Zinc finger domain 17 in Zinc finger protein 473
Descriptor: ZINC ION, Zinc finger protein 473
Authors:Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-04
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of C2H2 type Zinc finger domain 17 in Zinc finger protein 473
To be Published
2YT8
DownloadVisualize
BU of 2yt8 by Molmil
Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
Descriptor: Amyloid beta A4 precursor protein-binding family A member 3
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Seiki, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
To be Published
2YTM
DownloadVisualize
BU of 2ytm by Molmil
Solution structure of the C2H2 type zinc finger (region 696-728) of human Zinc finger protein 28 homolog
Descriptor: ZINC ION, Zinc finger protein 28 homolog
Authors:Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the C2H2 type zinc finger (region 696-728) of human Zinc finger protein 28 homolog
To be Published
6WO1
DownloadVisualize
BU of 6wo1 by Molmil
Hybrid acetohydroxyacid synthase complex structure with Cryptococcus neoformans AHAS catalytic subunit and Saccharomyces cerevisiae AHAS regulatory subunit
Descriptor: 2-methylpyrimidin-4-amine, Acetohydroxyacid synthase catalytic subunit, Acetohydroxyacid synthase regulatory subunit, ...
Authors:Guddat, L.W, Lonhienne, T.
Deposit date:2020-04-23
Release date:2020-07-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of fungal and plant acetohydroxyacid synthases.
Nature, 586, 2020
6DN2
DownloadVisualize
BU of 6dn2 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA
Descriptor: 4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
2YGO
DownloadVisualize
BU of 2ygo by Molmil
WIF domain-EGF-like domain 1 of human Wnt inhibitory factor 1 in complex with 1,2-dipalmitoylphosphatidylcholine
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:Malinauskas, T, Aricescu, A.R, Lu, W, Siebold, C, Jones, E.Y.
Deposit date:2011-04-19
Release date:2011-07-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Modular Mechanism of Wnt Signaling Inhibition by Wnt Inhibitory Factor 1
Nat.Struct.Mol.Biol., 18, 2011
2YUC
DownloadVisualize
BU of 2yuc by Molmil
Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
Descriptor: TNF receptor-associated factor 4, ZINC ION
Authors:Hayashi, F, Suetake, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
To be Published
6WGU
DownloadVisualize
BU of 6wgu by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase
Descriptor: Corrinoid adenosyltransferase, SULFATE ION
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2020-04-06
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B 12 .
Proc.Natl.Acad.Sci.USA, 117, 2020

223790

건을2024-08-14부터공개중

PDB statisticsPDBj update infoContact PDBjnumon