PDB: 222415 resultsInfo pagesStatus searchChemie searchBIRD

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4V7M	The structures of Capreomycin bound to the 70S ribosome. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Stanley, R.E, Blaha, G. Deposit date: 2009-11-12 Release date: 2014-07-09 Last modified: 2017-11-22 Method: X-RAY DIFFRACTION (3.45 Å) Cite: The structures of the anti-tuberculosis antibiotics viomycin and capreomycin bound to the 70S ribosome. Nat.Struct.Mol.Biol., 17, 2010
6D9X	Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design Descriptor: 2-phenyl-6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, SODIUM ION, WD repeat-containing protein 5 Authors: Phan, J, Fesik, S.W. Deposit date: 2018-04-30 Release date: 2018-09-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Discovery of Potent 2-Aryl-6,7-dihydro-5 H-pyrrolo[1,2- a]imidazoles as WDR5-WIN-Site Inhibitors Using Fragment-Based Methods and Structure-Based Design. J. Med. Chem., 61, 2018
5K58	Structure of the K. pneumonia SlmA-DNA complex bound to the C-terminal of the cell division protein FtsZ Descriptor: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*TP*CP*AP*C)-3'), Nucleoid occlusion factor SlmA, Octapeptide Authors: Schumacher, M. Deposit date: 2016-05-23 Release date: 2016-06-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.772 Å) Cite: Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
7XLD	Crystal structure of IsdH linker-NEAT3 bound to a nanobody (VHH) Descriptor: Iron-regulated surface determinant protein H, MAGNESIUM ION, Nanobody VHH6, ... Authors: Caaveiro, J.M.M, Valenciano-Bellido, S, Tsumoto, K. Deposit date: 2022-04-21 Release date: 2023-05-31 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth. J.Biol.Chem., 299, 2023
5K7A	Crystal structure of laccase fron Thermus thermophilus HB27 (sodium nitrate 1.5 min) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase Authors: Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E. Deposit date: 2016-05-25 Release date: 2017-06-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Preserving metalic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase To be Published
6D4F	Crystal structure of PTP epsilon D2 domain (A455N/V457Y/E597D) Descriptor: PENTAETHYLENE GLYCOL, Receptor-type tyrosine-protein phosphatase epsilon Authors: Lountos, G.T, Raran-Kurussi, S, Zhao, B.M, Dyas, B.K, Austin, B.P, Burke Jr, T.R, Ulrich, R.G, Waugh, D.S. Deposit date: 2018-04-18 Release date: 2018-10-17 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.909 Å) Cite: High-resolution crystal structures of the D1 and D2 domains of protein tyrosine phosphatase epsilon for structure-based drug design. Acta Crystallogr D Struct Biol, 74, 2018
6DBK	Tyk2 with compound 8 Descriptor: 4-({4-[(1S,4S)-5-(cyanoacetyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl}amino)-N-ethylbenzamide, Non-receptor tyrosine-protein kinase TYK2 Authors: Vajdos, F.F. Deposit date: 2018-05-03 Release date: 2018-08-29 Last modified: 2018-11-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Dual Inhibition of TYK2 and JAK1 for the Treatment of Autoimmune Diseases: Discovery of (( S)-2,2-Difluorocyclopropyl)((1 R,5 S)-3-(2-((1-methyl-1 H-pyrazol-4-yl)amino)pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octan-8-yl)methanone (PF-06700841). J. Med. Chem., 61, 2018
6D4R	M. thermoresistible GuaB2 delta-CBS in complex with inhibitor Compound 18 (VCC399134) Descriptor: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase, hydroxy(3-{4-[(isoquinolin-5-yl)sulfonyl]piperazine-1-carbonyl}phenyl)oxoammonium Authors: Ascher, D.B, Pacitto, A, Blundell, T.L. Deposit date: 2018-04-18 Release date: 2019-05-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Synthesis and Structure-Activity relationship of 1-(5-isoquinolinesulfonyl)piperazine analogues as inhibitors of Mycobacterium tuberculosis IMPDH. Eur.J.Med.Chem., 174, 2019
6D55	Ras:SOS:Ras in complex with a small molecule activator Descriptor: 6-chloro-2-(2,6-diazaspiro[3.3]heptan-2-yl)-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-4-(4-methylpiperazin-1-yl)-1H-benzimidazole, FORMIC ACID, GLYCEROL, ... Authors: Phan, J, Hodges, T, Fesik, S.W. Deposit date: 2018-04-19 Release date: 2018-09-19 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Discovery and Structure-Based Optimization of Benzimidazole-Derived Activators of SOS1-Mediated Nucleotide Exchange on RAS. J. Med. Chem., 61, 2018
5K92	Crystal Structure of an apo Tris-thiolate Binding Site in a de novo Three Stranded Coiled Coil Peptide Descriptor: Apo-(CSL16C)3, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Ruckthong, L, Zastrow, M.L, Stuckey, J.A, Pecoraro, V.L. Deposit date: 2016-05-31 Release date: 2016-08-31 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.42 Å) Cite: A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins. J.Am.Chem.Soc., 138, 2016
4U27	Crystal structure of the E. coli ribosome bound to flopristin and linopristin. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. Deposit date: 2014-07-16 Release date: 2014-07-30 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
6D5Y	Crystal structure of ERK2 G169D mutant Descriptor: Mitogen-activated protein kinase 1 Authors: Yin, J, Jaiswal, B.S, Wang, W. Deposit date: 2018-04-19 Release date: 2019-02-27 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.86 Å) Cite: ERK Mutations and Amplification Confer Resistance to ERK-Inhibitor Therapy. Clin. Cancer Res., 24, 2018
6D74	Direct Activation of the Executioner Domain of MLKL by a Select Repertoire of Inositol Phosphates Descriptor: Mixed lineage kinase domain-like protein Authors: Royappa, G.C, McNamara, D.E, Moldoveanu, T. Deposit date: 2018-04-24 Release date: 2019-05-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Direct Activation of Human MLKL by a Select Repertoire of Inositol Phosphate Metabolites. Cell Chem Biol, 26, 2019
6D53	Trans form of HemolysinII c-terminal domain Descriptor: Hemolysin II Authors: Kaplan, A.R, Alexandrescu, A.T, Olson, R. Deposit date: 2018-04-19 Release date: 2019-04-24 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Trans form of HemolysinII c-terminal domain To Be Published
6D6B	The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 11 Descriptor: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 2-nitrobenzoate, Transcriptional activator protein LasR Authors: Dong, S.H, Nair, S.K. Deposit date: 2018-04-20 Release date: 2018-08-08 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR. Cell Chem Biol, 25, 2018
6D50	Bacteroides uniforms beta-glucuronidase 2 bound to D-glucaro-1,5-lactone Descriptor: (2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxo-oxane-2-carboxylic acid, CALCIUM ION, Glycosyl hydrolases family 2, ... Authors: Walton, W.G, Pellock, S.J, Redinbo, M.R. Deposit date: 2018-04-19 Release date: 2018-10-17 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Three structurally and functionally distinct beta-glucuronidases from the human gut microbeBacteroides uniformis. J. Biol. Chem., 293, 2018
6D7N	Crystal structure of the W357R/W399R Importin alpha mutant Descriptor: 1,2-ETHANEDIOL, Peroxidase,Importin subunit alpha-1 Authors: Pedersen, L.C, London, R.E, Gabel, S.A. Deposit date: 2018-04-25 Release date: 2019-03-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Variations in nuclear localization strategies among pol X family enzymes. Traffic, 2018
6D7S	Cryo-EM structure of human TRPV6-Y467A in amphipols Descriptor: Transient receptor potential cation channel subfamily V member 6 Authors: Singh, A.K, Saotome, K, McGoldrick, L.L, Sobolevsky, A.I. Deposit date: 2018-04-25 Release date: 2018-07-18 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.34 Å) Cite: Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB. Nat Commun, 9, 2018
6D8O	Group I self-splicing intron P4-P6 domain mutant A230U Descriptor: Group I self-splicing intron, MAGNESIUM ION Authors: Shoffner, G.M. Deposit date: 2018-04-26 Release date: 2018-07-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.80112481 Å) Cite: In Crystallo Selection to Establish New RNA Crystal Contacts. Structure, 26, 2018
6D6C	The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 12 Descriptor: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 2-methoxybenzoate, HISTIDINE, Transcriptional activator protein LasR Authors: Dong, S.H, Nair, S.K. Deposit date: 2018-04-20 Release date: 2018-08-08 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR. Cell Chem Biol, 25, 2018
7XEX	Crystal strucutre of apoCasDinG Descriptor: CasDinG Authors: Zhang, J.T, Cui, N, Liu, Y.R, Huang, H.D, Jia, N. Deposit date: 2022-03-31 Release date: 2023-07-26 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3 Å) Cite: Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment. Mol.Cell, 83, 2023
7XF1	Crystal strucutre of apoCasDinG in complex with ssDNA Descriptor: CasDinG, DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') Authors: Zhang, J.T, Cui, N, Liu, Y.R, Huang, H.D, Jia, N. Deposit date: 2022-03-31 Release date: 2023-07-26 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment. Mol.Cell, 83, 2023
5KD0	Crystal structure of the aromatic prenyltransferase AtaPT(E91A) mutant from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II Descriptor: GERANYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate Authors: Sun, F, Gao, B. Deposit date: 2016-06-07 Release date: 2016-12-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol., 13, 2017
6D4U	M. thermoresistible GuaB2 delta-CBS in complex with inhibitor Compound 27 (VCC663664) Descriptor: 2-(2,4-dimethoxyphenyl)-1-{4-[(isoquinolin-5-yl)sulfonyl]piperazin-1-yl}ethan-1-one, INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase Authors: Ascher, D.B, Pacitto, A, Blundell, T.L. Deposit date: 2018-04-18 Release date: 2019-05-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Synthesis and Structure-Activity relationship of 1-(5-isoquinolinesulfonyl)piperazine analogues as inhibitors of Mycobacterium tuberculosis IMPDH. Eur.J.Med.Chem., 174, 2019
6D5U	Hexagonal thermolysin cryocooled to 100 K with 50% methanol as cryoprotectant Descriptor: CALCIUM ION, LYSINE, METHANOL, ... Authors: Juers, D.H. Deposit date: 2018-04-19 Release date: 2018-09-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.00009537 Å) Cite: The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order. Acta Crystallogr D Struct Biol, 74, 2018

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