PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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4YM7	RNA polymerase I structure with an alternative dimer hinge Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Kostrewa, D, Kuhn, C.-D, Engel, C, Cramer, P. Deposit date: 2015-03-06 Release date: 2015-09-09 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (5.5 Å) Cite: An alternative RNA polymerase I structure reveals a dimer hinge. Acta Crystallogr.,Sect.D, 71, 2015
6W7N	30S-Inactive-low-Mg2+ Class A Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S12, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
8ISS	Cryo-EM structure of wild-type human tRNA Splicing Endonuclease Complex bound to pre-tRNA-ARG at 3.19 A resolution Descriptor: MAGNESIUM ION, RNA (88-MER), tRNA-splicing endonuclease subunit Sen15, ... Authors: Sun, Y, Zhang, Y, Yuan, L, Han, Y. Deposit date: 2023-03-21 Release date: 2023-10-18 Method: ELECTRON MICROSCOPY (3.19 Å) Cite: Recognition and cleavage mechanism of intron-containing pre-tRNA by human TSEN endonuclease complex. Nat Commun, 14, 2023
6W77	30S-Inactivated-high-Mg2+ Class A Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-18 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
6W6K	30S-Activated-high-Mg2+ Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-17 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
6W7M	30S-Inactive-high-Mg2+ + carbon layer Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
7SCQ	tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 2. Descriptor: Tyrosine--tRNA ligase, tRNA-like structure from brome mosaic virus RNA 3. Authors: Kieft, J.S, Bonilla, S.L. Deposit date: 2021-09-28 Release date: 2021-12-01 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (6 Å) Cite: A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. Science, 374, 2021
6W7W	30S-Inactive-low-Mg2+ Class B Descriptor: 16S rRNA, 30S ribosomal protein S12, 30S ribosomal protein S15, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
7SC6	tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 1. Descriptor: Tyrosine--tRNA ligase, tRNA-like structure from brome mosaic virus RNA 3 Authors: Kieft, J.S, Bonilla, S.L. Deposit date: 2021-09-27 Release date: 2021-12-01 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (5.51 Å) Cite: A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. Science, 374, 2021
5L4O	Structure of an E.coli initiator tRNAfMet A1-U72 variant Descriptor: SODIUM ION, tRNA (76-MER) Authors: Monestier, A, Schmitt, E, Mechulam, Y. Deposit date: 2016-05-26 Release date: 2017-03-01 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.799 Å) Cite: The structure of an E. coli tRNAf(Met) A1-U72 variant shows an unusual conformation of the A1-U72 base pair. RNA, 23, 2017
7UXA	Human tRNA Splicing Endonuclease Complex bound to pre-tRNA-ARG Descriptor: MAGNESIUM ION, RNA (78-MER), tRNA-splicing endonuclease subunit Sen15, ... Authors: Stanley, R.E, Hayne, C.K. Deposit date: 2022-05-05 Release date: 2023-02-08 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Structural basis for pre-tRNA recognition and processing by the human tRNA splicing endonuclease complex. Nat.Struct.Mol.Biol., 30, 2023
3EQ4	Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM Descriptor: 30S ribosomal protein S12, 50S ribosomal protein L11, Elongation factor Tu, ... Authors: Frank, J, Li, W, Agirrezabala, X. Deposit date: 2008-09-30 Release date: 2008-12-16 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (12 Å) Cite: Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM. Embo J., 27, 2008
3EQ3	Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM Descriptor: 30S ribosomal protein S12, 50S ribosomal protein L11, Elongation factor Tu, ... Authors: Frank, J, Li, W, Agirrezabala, X. Deposit date: 2008-09-30 Release date: 2008-12-16 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (9 Å) Cite: Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM. Embo J., 27, 2008
5ZEP	M. smegmatis hibernating state 70S ribosome structure Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-27 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
4TUB	Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fagan, C.E, Dunham, C.M. Deposit date: 2014-06-24 Release date: 2015-05-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
1B23	E. coli cysteinyl-tRNA and T. aquaticus elongation factor EF-TU:GTP ternary complex Descriptor: CYSTEINE, CYSTEINYL TRNA, ELONGATION FACTOR TU, ... Authors: Nissen, P, Kjeldgaard, M, Thirup, S, Nyborg, J. Deposit date: 1998-12-04 Release date: 1998-12-07 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA. Structure Fold.Des., 7, 1999
6TPH	Structure of a protein-RNA complex by ssNMR Descriptor: 50S ribosomal protein L7Ae, RNA (26-MER) Authors: Mumdooh, A, Marchanka, A, Carlomagno, T. Deposit date: 2019-12-13 Release date: 2020-02-12 Last modified: 2024-06-19 Method: SOLID-STATE NMR Cite: Structure of a Protein-RNA Complex by Solid-State NMR Spectroscopy. Angew.Chem.Int.Ed.Engl., 59, 2020
6GX6	Crystal structure of IMP3 RRM12 in complex with RNA (ACAC) Descriptor: 1,2-ETHANEDIOL, Insulin-like growth factor 2 mRNA-binding protein 3, PHOSPHATE ION, ... Authors: Jia, M, Gut, H, Chao, A.J. Deposit date: 2018-06-26 Release date: 2018-09-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of IMP3 RRM12 recognition of RNA. RNA, 24, 2018
8COO	Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA Descriptor: Insulin-like growth factor 2 mRNA-binding protein 1, RNA_(5'-R(*(UP*CP*GP*GP*(6MZ)P*CP*U)-3') Authors: Nicastro, G, Abis, G, Taylor, I.A, Ramos, A. Deposit date: 2023-02-28 Release date: 2024-02-07 Method: SOLUTION NMR Cite: Direct m6A recognition by IMP1 underlays an alternative model of target selection for non-canonical methyl-readers. Nucleic Acids Res., 51, 2023
3SIU	Structure of a hPrp31-15.5K-U4atac 5' stem loop complex, monomeric form Descriptor: NHP2-like protein 1, SULFATE ION, U4/U6 small nuclear ribonucleoprotein Prp31, ... Authors: Liu, S, Ghalei, H, Luhrmann, R, Wahl, M.C. Deposit date: 2011-06-20 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.626 Å) Cite: Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. Rna, 17, 2011
3SIV	Structure of a hPrp31-15.5K-U4atac 5' stem loop complex, dimeric form Descriptor: NHP2-like protein 1, U4/U6 small nuclear ribonucleoprotein Prp31, U4atac snRNA Authors: Liu, S, Ghalei, H, Luhrmann, R, Wahl, M.C. Deposit date: 2011-06-20 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.304 Å) Cite: Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. Rna, 17, 2011
3CME	The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui Descriptor: 50S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Simonovic, M, Steitz, T.A. Deposit date: 2008-03-21 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA. Rna, 14, 2008
7PMM	DEAD-box helicase DbpA in the active conformation bound to a ss/dsRNA junction and ADP/BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... Authors: Wurm, J.P. Deposit date: 2021-09-02 Release date: 2022-09-14 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
7K98	Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS) Descriptor: 5'-O-(L-phenylalanylsulfamoyl)adenosine, CHLORIDE ION, GLYCEROL, ... Authors: Michalska, K, Chang, C, Jedrzejczak, R, Wower, J, Baragana, B, Forte, B, Gilbert, I.H, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2020-09-28 Release date: 2021-05-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation. Nucleic Acids Res., 49, 2021
7KA0	Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and phenylalanine Descriptor: ACETATE ION, GLYCEROL, MAGNESIUM ION, ... Authors: Chang, C, Michalska, K, Jedrzejczak, R, Wower, J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2020-09-29 Release date: 2021-05-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation. Nucleic Acids Res., 49, 2021

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