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5TJG	Thermus aquaticus delta1.1-sigmaA holoenzyme/downstream-fork promoter complex with an open clamp Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*A)-3'), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Darst, S.A, Bae, B. Deposit date: 2016-10-04 Release date: 2017-06-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.6 Å) Cite: RNA polymerase motions during promoter melting. Science, 356, 2017
7AAP	Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP Descriptor: MAGNESIUM ION, Non-structural protein 12, Non-structural protein 7, ... Authors: Naydenova, K, Muir, K.W, Wu, L.F, Zhang, Z, Coscia, F, Peet, M, Castro-Hartman, P, Qian, P, Sader, K, Dent, K, Kimanius, D, Sutherland, J.D, Lowe, J, Barford, D, Russo, C.J. Deposit date: 2020-09-04 Release date: 2020-09-23 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structure of the SARS-CoV-2 RNA-dependent RNA polymerase in the presence of favipiravir-RTP. Proc.Natl.Acad.Sci.USA, 118, 2021
3JA4	RNA-dependent RNA polymerases of transcribing cypoviruses Descriptor: RNA-dependent RNA polymerase Authors: Liu, H, Cheng, L. Deposit date: 2015-04-20 Release date: 2015-10-28 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cryo-EM shows the polymerase structures and a nonspooled genome within a dsRNA virus. Science, 349, 2015
6DT8	Bacteriophage N4 RNA polymerase II elongation complex 1 Descriptor: DNA (5'-D(P*AP*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*UP*GP*G)-3'), RNAP1, ... Authors: Molodtsov, V, Murakami, K.S. Deposit date: 2018-06-15 Release date: 2018-07-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
6DTA	Bacteriophage N4 RNA polymerase II elongation complex 2 Descriptor: DNA (5'-D(P*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Molodtsov, V, Murakami, K.S. Deposit date: 2018-06-15 Release date: 2018-07-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.694 Å) Cite: Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
5N9G	TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1- Descriptor: DNA/RNA (25-MER), DNA/RNA (27-MER), SODIUM ION, ... Authors: Gouge, J, Vannini, A, Guthertz, N. Deposit date: 2017-02-24 Release date: 2017-06-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation. Nat Commun, 8, 2017
6DT7	Bacteriophage N4 RNA polymerase II and DNA complex Descriptor: DNA (5'-D(P*CP*CP*AP*CP*CP*TP*GP*CP*A)-3'), RNAP1, RNAP2 Authors: Molodtsov, V, Murakami, K.S. Deposit date: 2018-06-15 Release date: 2018-07-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
3C3L	X-ray crystal structure of the N4 mini-vRNAP P2 promoter complex Descriptor: P2 Promoter DNA, Virion RNA polymerase Authors: Gleghorn, M.L, Murakami, K.S. Deposit date: 2008-01-28 Release date: 2008-12-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase. Mol.Cell, 32, 2008
3C2P	X-ray crystal structure of the N4 mini-vRNAP P1 promoter complex Descriptor: P1 Promoter DNA, Virion RNA polymerase Authors: Gleghorn, M.L, Murakami, K.S. Deposit date: 2008-01-25 Release date: 2008-12-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase. Mol.Cell, 32, 2008
4GZK	Structure and interactions of the RNA-dependent RNA polymerase from bacteriophage phi12 Descriptor: FORMIC ACID, MAGNESIUM ION, RNA-dependent RNA polymerase P2 Authors: Ren, Z, Franklin, M, Ghose, R. Deposit date: 2012-09-06 Release date: 2013-07-24 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Structure of the RNA-directed RNA Polymerase from the cystovirus 12. Proteins, 81, 2013
3C46	X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 Descriptor: DIHYDROGENPHOSPHATE ION, P2_7a Promoter DNA, Virion RNA polymerase Authors: Gleghorn, M.L, Murakami, K.S. Deposit date: 2008-01-29 Release date: 2008-12-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase. Mol.Cell, 32, 2008
5H0R	RNA dependent RNA polymerase ,vp4,dsRNA Descriptor: RNA (42-MER), RNA-dependent RNA polymerase, VP4 protein Authors: Li, X, Zhou, N, Chen, W, Zhu, B, Wang, X, Xu, B, Wang, J, Liu, H, Cheng, L. Deposit date: 2016-10-06 Release date: 2017-01-25 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV J. Mol. Biol., 429, 2017
4NJC	RNA Polymerase interacting protein YkzG from Geobacillus stearothermophilus Descriptor: Geobacillus stearothermophilus YkzG Authors: Keller, A.N, Lewis, P.J. Deposit date: 2013-11-09 Release date: 2014-08-20 Last modified: 2014-10-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: epsilon, a New Subunit of RNA Polymerase Found in Gram-Positive Bacteria J.Bacteriol., 196, 2014
7BV2	The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate form of Remdesivir(RTP) Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ... Authors: Yin, W, Mao, C, Luan, X, Shen, D, Shen, Q, Su, H, Wang, X, Zhou, F, Zhao, W, Gao, M, Chang, S, Xie, Y.C, Tian, G, Jiang, H.W, Tao, S.C, Shen, J, Jiang, Y, Jiang, H, Xu, Y, Zhang, S, Zhang, Y, Xu, H.E. Deposit date: 2020-04-09 Release date: 2020-04-22 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir. Science, 368, 2020
1HMJ	SOLUTION STRUCTURE OF RNA POLYMERASE SUBUNIT H Descriptor: PROTEIN (SUBUNIT H) Authors: Thiru, A, Hodach, M, Eloranta, J, Kostourou, V, Weinzierl, R. Deposit date: 1999-02-05 Release date: 1999-04-05 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: RNA polymerase subunit H features a beta-ribbon motif within a novel fold that is present in archaea and eukaryotes. J.Mol.Biol., 287, 1999
4FF4	N4 mini-vRNAP transcription initiation complex, 4 min after soaking GTP, ATP and Mn Descriptor: ADENOSINE MONOPHOSPHATE, Bacteriophage N4 P2 promoter, GUANOSINE-5'-MONOPHOSPHATE, ... Authors: Murakami, K.S. Deposit date: 2012-05-31 Release date: 2012-12-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.026 Å) Cite: Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography. J.Biol.Chem., 288, 2013
4FF1	N4 mini-vRNAP transcription initiation complex, 1 min after soaking GTP, ATP and Mn Descriptor: Bacteriophag N4 P2 promoter, PHOSPHATE ION, Virion RNA polymerase Authors: Murakami, K.S, Basu, R.S. Deposit date: 2012-05-30 Release date: 2012-12-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.47 Å) Cite: Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography. J.Biol.Chem., 288, 2013
4FF3	N4 mini-vRNAP transcription initiation complex, 3 min after soaking GTP, ATP and Mn Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacteriophage N4 P2 promoter, GUANOSINE-5'-MONOPHOSPHATE, ... Authors: Murakami, K.S, Basu, R.S. Deposit date: 2012-05-30 Release date: 2012-12-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.997 Å) Cite: Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography. J.Biol.Chem., 288, 2013
4FF2	N4 mini-vRNAP transcription initiation complex, 2 min after soaking GTP, ATP and Mn Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacteriophage N4 P2 promoter, GUANOSINE-5'-MONOPHOSPHATE, ... Authors: Murakami, K.S, Basu, R.S. Deposit date: 2012-05-30 Release date: 2012-12-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography. J.Biol.Chem., 288, 2013
4KI2	Crystallographic analysis of an RNA-polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA Descriptor: DNA (5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3'), POTASSIUM ION, RNA polymerase sigma factor Authors: Feklistov, A, Darst, S.A. Deposit date: 2013-05-01 Release date: 2013-09-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Crystallographic analysis of an RNA polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA: quadruplex formation as a possible tool for engineering crystal contacts in protein-ssDNA complexes. Acta Crystallogr.,Sect.F, 69, 2013
1P16	Structure of an mRNA capping enzyme bound to the phosphorylated carboxyl-terminal domain of RNA polymerase II Descriptor: GUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ... Authors: Fabrega, C, Shen, V, Shuman, S, Lima, C.D. Deposit date: 2003-04-11 Release date: 2003-07-15 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of an mRNA capping enzyme bound to the phosphorylated carboxy-terminal domain of RNA polymerase II. Mol.Cell, 11, 2003
3E3J	Crystal Structure of an Intermediate Complex of T7 RNAP and 8nt of RNA Descriptor: DNA (28-MER), DNA (5'-D(*DTP*DAP*DAP*DTP*DAP*DCP*DGP*DAP*DCP*DTP*DCP*DAP*DCP*DTP*DAP*DTP*DAP*DTP*DTP*DTP*DCP*DTP*DGP*DCP*DCP*DAP*DAP*DAP*DCP*DGP*DGP*DC)-3'), DNA-directed RNA polymerase, ... Authors: Durniak, K.J, Bailey, S, Steitz, T.A. Deposit date: 2008-08-07 Release date: 2008-11-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (6.7 Å) Cite: The structure of a transcribing t7 RNA polymerase in transition from initiation to elongation Science, 322, 2008
3E2E	Crystal Structure of an Intermediate Complex of T7 RNAP and 7nt of RNA Descriptor: DNA (28-MER), DNA (31-MER), DNA-directed RNA polymerase, ... Authors: Durniak, K.J, Bailey, S, Steitz, T.A. Deposit date: 2008-08-05 Release date: 2008-11-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure of a transcribing t7 RNA polymerase in transition from initiation to elongation Science, 322, 2008
4IEG	Structure and interactions of the RNA-dependent RNA polymerase from bacteriophage phi12 (P1 crystal form) Descriptor: MAGNESIUM ION, RNA-dependent RNA polymerase P2 Authors: Ren, Z, Franklin, M.C, Ghose, R. Deposit date: 2012-12-13 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of the RNA-directed RNA Polymerase from the cystovirus 12. Proteins, 81, 2013
1TA0	Three-dimensional structure of a RNA-polymerase II binding protein with associated ligand. Descriptor: CITRIC ACID, Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION Authors: Kamenski, T, Heilmeier, S, Meinhart, T, Cramer, P. Deposit date: 2004-05-19 Release date: 2004-08-31 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure and Mechanism of RNA Polymerase II CTD Phosphatases. Mol.Cell, 15, 2004

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