PDB: 252 resultsInfo pagesStatus searchChemie searchBIRD

---

3LQJ	Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me3 peptide Descriptor: Histone H3, MLL1 PHD3-Bromo, ZINC ION Authors: Wang, Z, Patel, D.J. Deposit date: 2010-02-09 Release date: 2010-07-07 Last modified: 2017-07-26 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell(Cambridge,Mass.), 141, 2010
3KQI	crystal structure of PHF2 PHD domain complexed with H3K4Me3 peptide Descriptor: CHLORIDE ION, GLYCEROL, H3K4Me3 peptide, ... Authors: Wen, H, Li, J.Z, Song, T, Lu, M, Lee, M. Deposit date: 2009-11-17 Release date: 2010-02-02 Last modified: 2019-02-13 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation. J.Biol.Chem., 285, 2010
5B75	Crystal structure of MOZ double PHD finger in complex with histone H3 butyrylation at K14 Descriptor: Histone H3, Histone acetyltransferase KAT6A, SULFATE ION, ... Authors: Li, H, Xiong, X. Deposit date: 2016-06-05 Release date: 2016-10-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.704 Å) Cite: Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2 Nat.Chem.Biol., 12, 2016
5B79	Crystal structure of DPF2 double PHD finger Descriptor: ZINC ION, Zinc finger protein ubi-d4 Authors: Li, H, Xiong, X. Deposit date: 2016-06-05 Release date: 2016-10-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.601 Å) Cite: Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2 Nat.Chem.Biol., 12, 2016
2DX8	Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus Descriptor: Pygopus homolog 1, ZINC ION Authors: Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-24 Release date: 2007-05-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published
2E6S	Solution structure of the PHD domain in RING finger protein 107 Descriptor: E3 ubiquitin-protein ligase UHRF2, ZINC ION Authors: Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in RING finger protein 107 To be Published
2E6R	Solution structure of the PHD domain in SmcY protein Descriptor: Jumonji/ARID domain-containing protein 1D, ZINC ION Authors: Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in SmcY protein To be Published
2FUI	NMR solution structure of PHD finger fragment of human BPTF in free state Descriptor: bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-26 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FUU	NMR solution structure of the PHD domain from the human BPTF in complex with H3(1-15)K4me3 peptide Descriptor: Histone H3, ZINC ION, bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-27 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
5B76	Crystal structure of MOZ double PHD finger domain in complex with histone H3 crotonylation at K14 Descriptor: Histone H3, Histone acetyltransferase KAT6A, SULFATE ION, ... Authors: Li, H, Xiong, X. Deposit date: 2016-06-05 Release date: 2016-10-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.653 Å) Cite: Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2 Nat.Chem.Biol., 12, 2016
5B77	Crystal structrue of MOZ double PHD finger in complex with histone H3 propionylation at K14 Descriptor: Histone H3, Histone acetyltransferase KAT6A, SULFATE ION, ... Authors: Li, H, Xiong, X. Deposit date: 2016-06-05 Release date: 2016-10-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.551 Å) Cite: Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2 Nat.Chem.Biol., 12, 2016
5B78	Crystal structure of MOZ double PHD finger mutant-S210D/N235R in complex with histone H3 crotonylation at K14 Descriptor: Histone H3, Histone acetyltransferase KAT6A, ZINC ION Authors: Li, H, Xiong, X. Deposit date: 2016-06-05 Release date: 2016-10-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2 Nat.Chem.Biol., 12, 2016
5C13	Crystal Structure of TAF3 PHD finger bound to histone H3C4me3 peptide Descriptor: H3 peptide, Transcription initiation factor TFIID subunit 3, ZINC ION Authors: Li, H, Huang, J. Deposit date: 2015-06-12 Release date: 2015-11-25 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.101 Å) Cite: Crystal Structure of Jarid1a PHD finger bound to histone H3C4me3 peptide Nat Commun, 2015
2VP7	Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex Descriptor: B-CELL CLL/LYMPHOMA 9 PROTEIN, PYGOPUS HOMOLOG 1, SULFATE ION, ... Authors: Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Evans, P, Bienz, M. Deposit date: 2008-02-26 Release date: 2008-06-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex. Mol.Cell, 30, 2008
2XB1	Crystal structure of the human Pygo2 PHD finger in complex with the B9L HD1 domain Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, PYGOPUS HOMOLOG 2, ... Authors: Miller, T.C, Rutherford, T.J, Johnson, C.M, Fiedler, M, Bienz, M. Deposit date: 2010-04-01 Release date: 2010-07-28 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Allosteric Remodeling of the Histone H3 Binding Pocket in the Pygo2 Phd Finger Triggered by its Binding to the B9L/Bcl9 Co-Factor. J.Mol.Biol., 401, 2010
2VPD	Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex Descriptor: B-CELL CLL/LYMPHOMA 9 PROTEIN, PYGOPUS HOMOLOG 1, ZINC ION Authors: Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Evans, P, Bienz, M. Deposit date: 2008-02-27 Release date: 2008-06-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.77 Å) Cite: Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex. Mol.Cell, 30, 2008
2VPB	Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex Descriptor: B-CELL CLL/LYMPHOMA 9 PROTEIN, PYGOPUS HOMOLOG 1, SODIUM ION, ... Authors: Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Evans, P, Bienz, M. Deposit date: 2008-02-27 Release date: 2008-06-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex. Mol.Cell, 30, 2008
2VPG	Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex Descriptor: B-CELL CLL/LYMPHOMA 9 PROTEIN, GLYCEROL, HISTONE H3 TAIL, ... Authors: Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Bienz, M, Evans, P. Deposit date: 2008-02-27 Release date: 2008-06-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex. Mol.Cell, 30, 2008
2VPE	Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex Descriptor: B-CELL CLL/LYMPHOMA 9 PROTEIN, GLYCEROL, HISTONE H3 TAIL, ... Authors: Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Evans, P, Bienz, M. Deposit date: 2008-02-27 Release date: 2008-06-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex. Mol.Cell, 30, 2008
2YQL	Solution structure of the PHD domain in PHD finger protein 21A Descriptor: PHD finger protein 21A, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-30 Release date: 2008-03-18 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in PHD finger protein 21A To be Published
2YYR	Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide Descriptor: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION Authors: Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-01 Release date: 2008-05-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide To be Published
2YSM	Solution structure of the second and third PHD domain from Histone-lysine N-methyltransferase 2C (KMT2C/MLL3) Descriptor: Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog, ZINC ION Authors: Qin, X.R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-03 Release date: 2007-10-09 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of the first and second PHD domain from Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog To be Published
5SZC	Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with monomethylated K4 and acetylated K14 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Histone H3 tail peptide, ZINC ION, ... Authors: Singh, N, Local, A, Shiau, A, Ren, B, Corbett, K.D. Deposit date: 2016-08-13 Release date: 2017-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.193 Å) Cite: Identification of H3K4me1-associated proteins at mammalian enhancers. Nat. Genet., 50, 2018
5SZB	Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Histone H3 tail peptide, ZINC ION, ... Authors: Singh, N, Local, A, Shiau, A, Ren, B, Corbett, K.D. Deposit date: 2016-08-13 Release date: 2017-08-16 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Identification of H3K4me1-associated proteins at mammalian enhancers. Nat. Genet., 50, 2018
5T8R	Crystal structure of human BAZ2A PHD zinc finger in complex with unmodified H3 10-mer Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, Histone H3.1, ... Authors: Amato, A, Gadd, M.S, Bortoluzzi, A, Ciulli, A. Deposit date: 2016-09-08 Release date: 2017-04-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains. Biochem. J., 474, 2017

<1234567891011>