PDB: 10938 resultsInfo pagesStatus searchChemie searchBIRD

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8WHA	Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ... Authors: Liu, Y, Zhang, Z, Du, J. Deposit date: 2023-09-22 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (4.05 Å) Cite: Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation. Nat.Plants, 10, 2024
8WH9	Structure of DDM1-nucleosome complex in ADP-BeFx state Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ... Authors: Liu, Y, Zhang, Z, Du, J. Deposit date: 2023-09-22 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.31 Å) Cite: Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation. Nat.Plants, 10, 2024
8WH8	Structure of DDM1-nucleosome complex in ADP state Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, DNA (antisense strand), ... Authors: Liu, Y, Zhang, Z, Du, J. Deposit date: 2023-09-22 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation. Nat.Plants, 10, 2024
8WH5	Structure of DDM1-nucleosome complex in the apo state Descriptor: ATP-dependent DNA helicase DDM1, DNA (antisense strand), DNA (sense strand), ... Authors: Liu, Y, Zhang, Z, Du, J. Deposit date: 2023-09-22 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation. Nat.Plants, 10, 2024
8WG5	Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... Authors: Ai, H.S, He, Z.Z, Deng, Z.H, Liu, L. Deposit date: 2023-09-20 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome To Be Published
8WF7	The Crystal Structure of integrase from Biortus Descriptor: ACETATE ION, Integrase, SULFATE ION Authors: Wang, F, Cheng, W, Yuan, Z, Qi, J, Li, J. Deposit date: 2023-09-19 Release date: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: The Crystal Structure of integrase from Biortus To Be Published
8W9F	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 3 Descriptor: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... Authors: Wang, C, Zhan, X. Deposit date: 2023-09-05 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8W9E	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2 Descriptor: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... Authors: Wang, C, Zhan, X. Deposit date: 2023-09-05 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8W9D	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 1 Descriptor: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... Authors: Wang, C, Zhan, X. Deposit date: 2023-09-05 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8W6V	Structural basis of chorismate isomerization by Arabidopsis isochorismate synthase ICS1 Descriptor: ACETATE ION, FORMIC ACID, Isochorismate synthase 1, ... Authors: Su, Z.H, Ming, Z.H. Deposit date: 2023-08-29 Release date: 2024-05-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of chorismate isomerization by Arabidopsis ISOCHORISMATE SYNTHASE1. Plant Physiol., 2024
8W26	X-ray crystal structure of the GAF-PHY domains of SyB-Cph1 Descriptor: 1,2-ETHANEDIOL, ACETATE ION, PHYCOCYANOBILIN, ... Authors: Burgie, E.S, Vierstra, R.D. Deposit date: 2024-02-20 Release date: 2024-05-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of the Photosensory Module from a PAS-Less Cyanobacterial Phytochrome Reveals a Hybrid Activated Conformation in the Dark-Adapted Pr State To Be Published
8W02	Q108K:K40L:T51V:T53S:R58W mutant of hCRBPII bound to synthetic fluorophore TD-1V Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2 Authors: Ghanbarpour, A, Geiger, J.H, Borhan, B. Deposit date: 2024-02-13 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.499 Å) Cite: Regulation of Emission via a Protein-Bound Fluorophore To Be Published
8W00	Q108K:K40L:T51V:T53S:Y19W:R58W:L117E mutant of hCRBPII bound to synthetic fluorophore TD-1V Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2 Authors: Nossoni, Z, Bingham, C.R, Geiger, J.H. Deposit date: 2024-02-13 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Regulation of Emission via a Protein-Bound Fluorophore To Be Published
8VZZ	Q108K:K40L:T51V:T53S:Y19W:R58W mutant of hCRBPII bound to synthetic fluorophore TD-1V Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2 Authors: Nosssoni, Z, Bingham, C.R, Geiger, J.H, Borhan, B. Deposit date: 2024-02-13 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.22 Å) Cite: Regulation of Emission via a Protein-Bound Fluorophore To Be Published
8VZY	Q108K:K40L:T51V:T53S:R58Y mutant of hCRBPII bound to synthetic fluorophore TD-1V Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2 Authors: Nossoni, Z, Bingham, C.R, Geiger, J.H, Borhan, B. Deposit date: 2024-02-13 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Regulation of Emission via a Protein-Bound Fluorophore To Be Published
8VZX	Q108K:K40L:T53A:R58F mutant of hCRBPII bound to synthetic fluorophore TD-1V Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2 Authors: Nossoni, Z, Bingham, C.R, Geiger, J.H. Deposit date: 2024-02-13 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Regulation of Emission via a Protein-Bound Fluorophore To Be Published
8VHM	Structure of DHODH in Complex with Fragment 2 Descriptor: ACETATE ION, CHLORIDE ION, Dihydroorotate dehydrogenase (quinone), ... Authors: Shaffer, P.L. Deposit date: 2024-01-02 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Discovery of Alternative Binding Poses through Fragment-Based Identification of DHODH Inhibitors. Acs Med.Chem.Lett., 15, 2024
8VHL	Structure of DHODH in Complex with Ligand 17 Descriptor: ACETATE ION, Dihydroorotate dehydrogenase (quinone), mitochondrial, ... Authors: Shaffer, P.L. Deposit date: 2024-01-02 Release date: 2024-04-03 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Discovery of Alternative Binding Poses through Fragment-Based Identification of DHODH Inhibitors. Acs Med.Chem.Lett., 15, 2024
8VF3	The crystal structure of GALQE CYP199A4 bound to 4-methoxybenzoic acid Descriptor: 4-METHOXYBENZOIC ACID, ACETATE ION, CHLORIDE ION, ... Authors: Podgorski, M.N, Bell, S.G. Deposit date: 2023-12-21 Release date: 2024-05-08 Method: X-RAY DIFFRACTION (1.469 Å) Cite: Engineering Peroxygenase Activity into Cytochrome P450 Monooxygenases through Modification of the Oxygen Binding Region Acs Catalysis, 2024
8VCN	GluER mutant - W66F F269Y Q293T F68Y T36E P263L Descriptor: ACETATE ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ... Authors: Jeffrey, P.D, Sorigue, D.R, Liu, Y, Hyster, T.K. Deposit date: 2023-12-14 Release date: 2024-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Asymmetric Synthesis of alpha-Chloroamides via Photoenzymatic Hydroalkylation of Olefins. J.Am.Chem.Soc., 146, 2024
8V8W	Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Tetragonal P form) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, OXAMIC ACID, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-12-06 Release date: 2023-12-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Tetragonal P form) To be published
8V7O	Fab fragment of human mAb #58 in complex with computationally optimized broadly reactive H1 influenza hemagglutinin X6 Descriptor: #58 heavy chain, #58 light chain, Hemagglutinin Authors: Nagashima, K.A, Mousa, J.J. Deposit date: 2023-12-04 Release date: 2024-04-10 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.57 Å) Cite: Structural basis for the broad antigenicity of the computationally optimized influenza hemagglutinin X6. Structure, 2024
8V7L	Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Histone H2A type 1, Histone H2B, ... Authors: Chio, U.S, Palovcak, E, Armache, J.P, Narlikar, G.J, Cheng, Y. Deposit date: 2023-12-04 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Nat Commun, 15, 2024
8V6V	Cryo-EM structure of doubly-bound SNF2h-nucleosome complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, Histone H2A type 1, Histone H2B, ... Authors: Chio, U.S, Palovcak, E, Armache, J.P, Narlikar, G.J, Cheng, Y. Deposit date: 2023-12-03 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Nat Commun, 15, 2024
8V5Z	UIC-1 mutant - UIC-1-L6M Descriptor: ACETONITRILE, UIC-1-L6M Authors: Heinz-Kunert, S.L. Deposit date: 2023-12-01 Release date: 2024-03-06 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (0.84 Å) Cite: Pore Restructuring of Peptide Frameworks by Mutations at Distal Packing Residues. Biomacromolecules, 25, 2024

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