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7YLL
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BU of 7yll by Molmil
Crystal structure of TTEDbh
Descriptor: DNA polymerase IV, MAGNESIUM ION, PHOSPHATE ION
Authors:Yan, X, Tian, L, Gao, H.
Deposit date:2022-07-26
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.6000092 Å)
Cite:Structure and function of extreme TLS DNA polymerase TTEDbh from Thermoanaerobacter tengcongensis.
Int.J.Biol.Macromol., 253, 2023
5JX8
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BU of 5jx8 by Molmil
New improved structure of D4 in trigonal space group
Descriptor: GLYCEROL, SULFATE ION, Uracil-DNA glycosylase
Authors:Schormann, N, Chattopadhyay, D.
Deposit date:2016-05-12
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.
Protein Sci., 25, 2016
5JX3
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BU of 5jx3 by Molmil
Wild type D4 in orthorhombic space group
Descriptor: CHLORIDE ION, GLYCEROL, Uracil-DNA glycosylase
Authors:Schormann, N, Chattopadhyay, D.
Deposit date:2016-05-12
Release date:2016-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.
Protein Sci., 25, 2016
5JX0
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BU of 5jx0 by Molmil
Temperature sensitive D4 mutant L110F
Descriptor: CHLORIDE ION, GLYCEROL, Uracil-DNA glycosylase
Authors:Schormann, N, Chattopadhyay, D.
Deposit date:2016-05-12
Release date:2017-02-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.
Protein Sci., 25, 2016
6X72
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BU of 6x72 by Molmil
Rev1 Mg2+-facilitated Product Complex with two monophosphates
Descriptor: DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*)-3'), DNA repair protein REV1, ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
2IKS
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BU of 2iks by Molmil
Crystal structure of N-terminal truncated DNA-binding transcriptional dual regulator from Escherichia coli K12
Descriptor: DNA-binding transcriptional dual regulator
Authors:Chang, C, Evdokimova, E, Kagan, O, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-10-02
Release date:2006-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of N-terminal truncated DNA-binding transcriptional dual regulator from Escherichia coli K12
To be Published
6F5C
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BU of 6f5c by Molmil
Structure of h. salinarum RosR (vng0258) grown from NaCl
Descriptor: CHLORIDE ION, HALOPHILIC WINGED-HELIX-TURN-HELIX DNA BINDING PROTEIN, SULFATE ION
Authors:Shaanan, B, Kutnowski, N, Shmuely, H.
Deposit date:2017-12-01
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
6EZ1
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BU of 6ez1 by Molmil
Structure of h. salinarum RosR (vng0258) grown from NaBr
Descriptor: BROMIDE ION, DNA binding protein, SULFATE ION
Authors:Shaanan, B, Kutnowski, N.
Deposit date:2017-11-13
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.75004315 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
6PE2
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BU of 6pe2 by Molmil
Drosophila P element transposase strand transfer complex
Descriptor: DNA (27-MER), DNA (5'-D(P*CP*GP*AP*AP*CP*TP*AP*TP*A)-3'), DNA (56-MER), ...
Authors:Kellogg, E.H, Nogales, E, Ghanim, G, Rio, D.C.
Deposit date:2019-06-19
Release date:2019-10-30
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of a P element transposase-DNA complex reveals unusual DNA structures and GTP-DNA contacts.
Nat.Struct.Mol.Biol., 26, 2019
5MLL
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BU of 5mll by Molmil
Structure of HpDprA at 1.9 Angstroms resolution
Descriptor: 1,2-ETHANEDIOL, DNA processing chain A (DprA)
Authors:Lisboa, J, Quevillon-Cheruel, S.
Deposit date:2016-12-07
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The C-terminal domain of HpDprA is a DNA-binding Winged Helix domain that does not bind double-stranded DNA.
FEBS J., 2019
2AJQ
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BU of 2ajq by Molmil
Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing
Descriptor: DNA Primer, DNA Template, T7 DNA polymerase, ...
Authors:Brieba, L, Ellenberger, T.
Deposit date:2005-08-02
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing
To be Published
7Q4N
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BU of 7q4n by Molmil
transcription factor CDX2 bound to hydroxymethylated DNA
Descriptor: DNA (18-MER), Homeobox protein CDX-2
Authors:Morgunova, E, Yin, Y, Popov, A, Taipale, J.
Deposit date:2021-11-01
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:transcription factor CDX2 bound to hydroxymethylated DNA
To Be Published
6FDH
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BU of 6fdh by Molmil
Structure of H. salinarum RosR (vng0258) grown from KCl
Descriptor: CHLORIDE ION, DNA binding protein, SULFATE ION
Authors:Shaanan, B, Kutnowski, N.
Deposit date:2017-12-23
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
6FAQ
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BU of 6faq by Molmil
Structure of H. salinarum RosR (vng0258) grown from KBr
Descriptor: BROMIDE ION, DNA binding protein, SULFATE ION
Authors:Shaanan, B, Kutnowski, N.
Deposit date:2017-12-16
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
3SJM
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BU of 3sjm by Molmil
Crystal Structure Analysis of TRF2-Dbd-DNA complex
Descriptor: DNA (5'-D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3'), Telomeric repeat-binding factor 2
Authors:Nair, S.K, Sliverman, S.K, Chen, J.H, Xiao, Y.
Deposit date:2011-06-21
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal Structure Analysis of TRF2-Dbd-DNA complex
To be Published
6QFD
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BU of 6qfd by Molmil
The complex structure of hsRosR-S4 (vng0258/RosR-S4)
Descriptor: DNA (28-MER), DNA-binding protein, MANGANESE (II) ION, ...
Authors:Shaanan, B, Kutnowski, N.
Deposit date:2019-01-10
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.133 Å)
Cite:Specificity of protein-DNA interactions in hypersaline environment: structural studies on complexes of Halobacterium salinarum oxidative stress-dependent protein hsRosR.
Nucleic Acids Res., 47, 2019
4CJ9
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BU of 4cj9 by Molmil
BurrH DNA-binding protein from Burkholderia rhizoxinica in its apo form
Descriptor: BURRH, SELENIUM ATOM
Authors:Stella, S, Molina, R, Lopez-Mendez, B, Campos-Olivas, R, Duchateau, P, Montoya, G.
Deposit date:2013-12-19
Release date:2014-07-09
Last modified:2014-07-23
Method:X-RAY DIFFRACTION (2.214 Å)
Cite:Bud, a Helix-Loop-Helix DNA-Binding Domain for Genome Modification
Acta Crystallogr.,Sect.D, 70, 2014
7OL9
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BU of 7ol9 by Molmil
Crystal structure of C-terminally truncated Bacillus subtilis nucleoid occlusion protein (Noc) complexed to the Noc-binding site (NBS)
Descriptor: DNA (5'-D(*TP*AP*TP*TP*TP*CP*CP*CP*GP*GP*GP*AP*AP*AP*TP*A)-3'), Nucleoid occlusion protein
Authors:Jalal, A.S.B, Lawson, D.M, Le, T.B.K.
Deposit date:2021-05-19
Release date:2022-03-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The CTP-binding domain is disengaged from the DNA-binding domain in a cocrystal structure of Bacillus subtilis Noc-DNA complex.
J.Biol.Chem., 299, 2023
5ZGN
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BU of 5zgn by Molmil
The crystal structure of KacTA-DNA complex
Descriptor: DNA (27-MER), KacA, KacT, ...
Authors:Qian, H.L, Yao, Q.Q, Gan, J.H, Ou, H.Y.
Deposit date:2018-03-09
Release date:2019-04-03
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:The crystal structure of KacTA-DNA complex
To Be Published
4YGM
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BU of 4ygm by Molmil
Vaccinia virus his-D4/A20(1-50) in complex with uracil
Descriptor: DNA polymerase processivity factor component A20, SULFATE ION, URACIL, ...
Authors:Tarbouriech, N, Iseni, F, Burmeister, W.P.
Deposit date:2015-02-26
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of the Vaccinia Virus Uracil-DNA Glycosylase in Complex with DNA.
J.Biol.Chem., 290, 2015
6P5A
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BU of 6p5a by Molmil
Drosophila P element transposase strand transfer complex
Descriptor: DNA (44-MER), DNA (5'-D(P*AP*GP*GP*TP*GP*GP*TP*CP*CP*CP*GP*TP*CP*GP*G)-3'), DNA (5'-D(P*CP*GP*AP*AP*CP*TP*AP*TP*A)-3'), ...
Authors:Kellogg, E.H, Nogales, E, Ghanim, G, Rio, D.C.
Deposit date:2019-05-30
Release date:2019-10-30
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of a P element transposase-DNA complex reveals unusual DNA structures and GTP-DNA contacts.
Nat.Struct.Mol.Biol., 26, 2019
6RAR
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BU of 6rar by Molmil
Pmar-Lig_PreS3-Mn
Descriptor: ADENOSINE MONOPHOSPHATE, ATP-dependent DNA ligase, DNA (5'-D(*TP*TP*CP*CP*GP*AP*CP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), ...
Authors:Leiros, H.K.S, Williamson, A.
Deposit date:2019-04-07
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.785 Å)
Cite:Structural intermediates of a DNA-ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation.
Nucleic Acids Res., 47, 2019
6RCE
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BU of 6rce by Molmil
Pmar-Lig_PreS3
Descriptor: ADENOSINE MONOPHOSPHATE, ATP-dependent DNA ligase, DNA (5'-D(*TP*TP*CP*CP*GP*AP*CP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), ...
Authors:Leiros, H.K.S, Williamson, A.
Deposit date:2019-04-11
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.946 Å)
Cite:Structural intermediates of a DNA-ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation.
Nucleic Acids Res., 47, 2019
9BH7
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BU of 9bh7 by Molmil
Human DNA polymerase theta helicase domain dimer in the apo form
Descriptor: DNA polymerase theta
Authors:Zerio, C.J, Lander, G.C.
Deposit date:2024-04-19
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Human polymerase theta helicase positions DNA microhomologies for double-strand break repair
To Be Published
9BH6
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BU of 9bh6 by Molmil
Human DNA polymerase theta helicase domain tetramer in the apo form
Descriptor: DNA polymerase theta
Authors:Zerio, C.J, Lander, G.C.
Deposit date:2024-04-19
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Human polymerase theta helicase positions DNA microhomologies for double-strand break repair
To Be Published

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