PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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4PGY	Structure of human DNA polymerase beta complexed with a nicked DNA containing a GT at N-1 position and GC at N position Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Koag, M.C, Lee, S. Deposit date: 2014-05-03 Release date: 2015-05-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.26 Å) Cite: The spontaneous base substitution mechanisms of human DNA polymerase beta To Be Published
6HV8	Cryo-EM structure of S. cerevisiae Polymerase epsilon deltacat mutant Descriptor: DNA polymerase epsilon catalytic subunit A, DNA polymerase epsilon subunit B, ZINC ION Authors: Goswami, P, Purkiss, A, Cheung, A, Costa, A. Deposit date: 2018-10-10 Release date: 2018-12-12 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structure of DNA-CMG-Pol epsilon elucidates the roles of the non-catalytic polymerase modules in the eukaryotic replisome. Nat Commun, 9, 2018
4PH5	Structure of human DNA polymerase beta complexed with a nicked DNA containing a AC at N-1 position and GC at N position Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Koag, M.C, Lee, S. Deposit date: 2014-05-04 Release date: 2015-05-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.55 Å) Cite: The spontaneous base substitution mechanisms of human DNA polymerase beta To Be Published
8EML	Crystal Structure of Gsx2 Homeodomain in Complex with DNA Descriptor: DNA (5'-D(P*GP*AP*GP*CP*TP*AP*AP*TP*TP*AP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*TP*TP*TP*AP*AP*TP*TP*AP*GP*CP*TP*C)-3'), GS homeobox 2, ... Authors: Webb, J.A, Kovall, R.A. Deposit date: 2022-09-28 Release date: 2023-10-18 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal Structure of Gsx2 Homeodomain in Complex with DNA To Be Published
6KF3	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... Authors: Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. Deposit date: 2019-07-06 Release date: 2020-07-01 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
3A46	Crystal structure of MvNei1/THF complex Descriptor: DNA, Formamidopyrimidine-DNA glycosylase, GLYCEROL Authors: Imamura, K, Wallace, S, Doublie, S. Deposit date: 2009-07-01 Release date: 2009-07-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA J.Biol.Chem., 284, 2009
2VTB	Structure of cryptochrome 3 - DNA complex Descriptor: 5'-D(*DT*DT*DT*DT*DTP)-3', 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, ACETATE ION, ... Authors: Pokorny, R, Klar, T, Hennecke, U, Carell, T, Batschauer, A, Essen, L.-O. Deposit date: 2008-05-13 Release date: 2009-06-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Recognition and Repair of Uv Lesions in Loop Structures of Duplex DNA by Dash-Type Cryptochrome. Proc.Natl.Acad.Sci.USA, 105, 2008
5KBD	Structural Studies of Transcription Factor p73 DNA Binding Domain Bound to PA26 20-mer Response Element Descriptor: DNA (5'-D(P*AP*GP*AP*CP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*AP*AP*GP*TP*CP*T)-3'), Tumor protein p73, ... Authors: Nguyen, H.T, Huang, D. Deposit date: 2016-06-03 Release date: 2016-08-31 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Studies of Transcription Factor p73 DNA Binding Domain Bound to PA26 20-mer Response Element To Be Published
1NK4	GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NJZ	CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NJW	GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NK5	ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NJY	THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NK7	GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
8BZM	FOXK1-ELF1-heterodimer bound to DNA Descriptor: DNA, ETS-related transcription factor Elf-1, Forkhead box protein K1, ... Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2022-12-15 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (2.69 Å) Cite: FOXK1-ELF1_heterodimer bound to DNA To Be Published
4GUO	structure of p73 DNA binding domain complex with 12 bp DNA Descriptor: DNA (5'-D(*CP*GP*GP*GP*CP*AP*AP*GP*CP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*GP*CP*TP*TP*GP*CP*CP*CP*G)-3'), Tumor protein p73, ... Authors: Ethayathulla, A.S, Viadiu, H. Deposit date: 2012-08-29 Release date: 2013-11-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.19 Å) Cite: structure of p73 DNA binding domain complex with 12 bp DNA To be Published
1NJX	THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NK6	CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
3A42	Crystal structure of MvNei1 Descriptor: Formamidopyrimidine-DNA glycosylase, GLYCEROL, SULFATE ION Authors: Imamura, K, Wallace, S, Doublie, S. Deposit date: 2009-06-30 Release date: 2009-07-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA J.Biol.Chem., 284, 2009
3A45	Crystal structure of MvNei1_2 Descriptor: Formamidopyrimidine-DNA glycosylase, POTASSIUM ION Authors: Imamura, K, Wallace, S, Doublie, S. Deposit date: 2009-06-30 Release date: 2009-07-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA J.Biol.Chem., 284, 2009
4MF8	Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template O6MG and incoming CTP Descriptor: DNA polymerase beta, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Koag, M.C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-08-27 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Structures of human DNA polymerase beta inserting bases opposite templating O6MG To be Published
4MFA	Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template O6MG and incoming TTP Descriptor: DNA polymerase beta, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Koag, M.C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-08-27 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Structures of human DNA polymerase beta inserting bases opposite templating O6MG To be Published
4I3H	A three-gate structure of topoisomerase IV from Streptococcus pneumoniae Descriptor: DNA (5'-D(*CP*AP*AP*AP*GP*GP*CP*GP*GP*TP*AP*AP*TP*AP*CP*GP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*AP*AP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*TP*TP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*CP*GP*TP*AP*TP*TP*AP*CP*CP*GP*CP*CP*TP*TP*TP*G)-3'), MAGNESIUM ION, ... Authors: Laponogov, I, Veselkov, D.A, Pan, X.-S, Crevel, I, Fisher, L.M, Sanderson, M.R. Deposit date: 2012-11-26 Release date: 2013-08-28 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Structure of an 'open' clamp type II topoisomerase-DNA complex provides a mechanism for DNA capture and transport. Nucleic Acids Res., 41, 2013
6CQG	YycF Effector Domain Structure without DNA bound Descriptor: DNA-binding response regulator, ZINC ION Authors: Riboldi-Tunnicliffe, A, Gabrielsen, M, Williamson, R.M, Panjikar, S. Deposit date: 2018-03-15 Release date: 2019-06-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.932 Å) Cite: YycF Effector Domain Structure without DNA bound To Be Published
3C5F	Structure of a binary complex of the R517A Pol lambda mutant Descriptor: DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*DC)-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DCP*DGP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3'), ... Authors: Garcia-Diaz, M, Bebenek, K, Foley, M.C, Pedersen, L.C, Schlick, T, Kunkel, T.A. Deposit date: 2008-01-31 Release date: 2008-09-02 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Substrate-induced DNA strand misalignment during catalytic cycling by DNA polymerase lambda. Embo Rep., 9, 2008

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