PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3NPQ	Structure of the S-adenosylhomocysteine riboswitch at 2.18 A Descriptor: COBALT HEXAMMINE(III), S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH Authors: Reyes, F.E, Edwards, A.E, Batey, R.T. Deposit date: 2010-06-28 Release date: 2010-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1814 Å) Cite: Structural basis for recognition of S-adenosylhomocysteine by riboswitches. Rna, 16, 2010
3NPN	Structure of the s-adenosylhomocysteine riboswitch at 3.0A Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH Authors: Reyes, F.E, Edwards, A.E, Batey, R.T. Deposit date: 2010-06-28 Release date: 2010-10-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.792 Å) Cite: Structural basis for recognition of S-adenosylhomocysteine by riboswitches. Rna, 16, 2010
1HJI	BACTERIOPHAGE HK022 NUN-PROTEIN-NUTBOXB-RNA COMPLEX Descriptor: NUN-PROTEIN, RNA (5-R(P*GP*CP*CP*CP*UP*GP*AP*AP*AP*AP*AP*GP*GP*GP*C)-3) Authors: Faber, C, Schaerpf, M, Becker, T, Sticht, H, Roesch, P. Deposit date: 2001-01-15 Release date: 2002-01-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The Structure of the Coliphage Hk022 Nun Protein-Lambda-Phage Boxb RNA Complex. Implications for the Mechanism of Transcription Termination J.Biol.Chem., 276, 2001
5HNQ	Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex Descriptor: 5fC modified RNA Authors: Luo, Z, Sheng, J. Deposit date: 2016-01-18 Release date: 2016-04-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Base pairing and structural insights into the 5-formylcytosine in RNA duplex. Nucleic Acids Res., 44, 2016
1EGK	CRYSTAL STRUCTURE OF A NUCLEIC ACID FOUR-WAY JUNCTION Descriptor: 10-23 DNA ENZYME, MAGNESIUM ION, RNA (5'-R(*AP*GP*GP*AP*GP*AP*GP*AP*GP*AP*UP*GP*GP*GP*UP*GP*CP*GP*AP*G)-3') Authors: Nowakowski, J, Shim, P.J, Stout, C.D, Joyce, G.F. Deposit date: 2000-02-15 Release date: 2000-06-26 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Alternative conformations of a nucleic acid four-way junction. J.Mol.Biol., 300, 2000
1K1G	STRUCTURAL BASIS FOR RECOGNITION OF THE INTRON BRANCH SITE RNA BY SPLICING FACTOR 1 Descriptor: 5'-R(*UP*AP*UP*AP*CP*UP*AP*AP*CP*AP*A)-3', SF1-Bo isoform Authors: Liu, Z, Luyten, I, Bottomley, M.J, Messias, A.C, Houngninou-Molango, S, Sprangers, R, Zanier, K, Kramer, A, Sattler, M. Deposit date: 2001-09-25 Release date: 2001-11-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis for recognition of the intron branch site RNA by splicing factor 1. Science, 294, 2001
3NYB	Structure and function of the polymerase core of TRAMP, a RNA surveillance complex Descriptor: Poly(A) RNA polymerase protein 2, Protein AIR2, ZINC ION Authors: Reinisch, K.M, Hamill, S. Deposit date: 2010-07-14 Release date: 2010-08-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7007 Å) Cite: Structure and function of the polymerase core of TRAMP, a RNA surveillance complex. Proc.Natl.Acad.Sci.USA, 107, 2010
8FEO	16mer self-complementary duplex RNA with two separated native U:U pairs Descriptor: MAGNESIUM ION, RNA 16mer, STRONTIUM ION Authors: Fang, Z, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.52 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FEQ	16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs Descriptor: CALCIUM ION, RNA 16mer with two separated s(2)U Authors: Fang, Z, Zhou, L, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
2I7E	GAAA tetralooop receptor complex with associated cobalt hexammine. Descriptor: 43-MER, COBALT HEXAMMINE(III) Authors: Davis, J.H, Butcher, S.E. Deposit date: 2006-08-30 Release date: 2007-04-03 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Role of metal ions in the tetraloop-receptor complex as analyzed by NMR. Rna, 13, 2007
2KP4	Structure of 2'F-ANA/RNA hybrid duplex Descriptor: DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L)P*(TAF)P*(GFL)P*(GFL))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') Authors: Gonzalez, C, Martin-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. Nucleic Acids Res., 38, 2010
2HVQ	Structure of Adenylated full-length T4 RNA Ligase 2 Descriptor: Hypothetical 37.6 kDa protein in Gp24-hoc intergenic region, MAGNESIUM ION Authors: Nandakumar, J, Lima, C.D. Deposit date: 2006-07-30 Release date: 2006-10-17 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward. Cell(Cambridge,Mass.), 127, 2006
4BHH	Crystal structure of tetramer of La Crosse virus nucleoprotein in complex with ssRNA Descriptor: NUCLEOPROTEIN, POLY-URIDINE 45-MER Authors: Reguera, J, Malet, H, Weber, F, Cusack, S. Deposit date: 2013-04-03 Release date: 2013-04-24 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural Basis for Encapsidation of Genomic RNA by La Crosse Orthobunyavirus Nucleoprotein. Proc.Natl.Acad.Sci.USA, 110, 2013
2KX5	Recognition of HIV TAR RNA by peptide mimetic of Tat protein Descriptor: Cyclic peptide mimetic of Tat protein, HIV TAR RNA Authors: Davidson, A, Patora-Komisarska, K, Robinson, J, Varani, G. Deposit date: 2010-04-26 Release date: 2010-07-07 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Essential structural requirements for specific recognition of HIV TAR RNA by peptide mimetics of Tat protein. Nucleic Acids Res., 39, 2011
4D25	Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA and AMPPNP Descriptor: 5'-R(*UP*GP*AP*CP*AP*UP)-3', BMVLG PROTEIN, GLYCEROL, ... Authors: Spinelli, P, Pillai, R.S, Kadlec, J, Cusack, S. Deposit date: 2014-05-07 Release date: 2014-06-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts. Cell(Cambridge,Mass.), 157, 2014
2R7S	Crystal Structure of Rotavirus SA11 VP1 / RNA (UGUGCC) complex Descriptor: PHOSPHATE ION, RNA (5'-R(*UP*GP*UP*GP*CP*C)-3'), RNA-dependent RNA polymerase Authors: Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L. Deposit date: 2007-09-10 Release date: 2008-07-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure, 16, 2008
2R7X	Crystal Structure of Rotavirus SA11 VP1/RNA (UGUGACC)/GTP complex Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA (5'-R(*UP*GP*UP*GP*AP*CP*C)-3'), RNA-dependent RNA polymerase Authors: Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L. Deposit date: 2007-09-10 Release date: 2008-07-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure, 16, 2008
8BS7	Multimerisation domain of Borna disease virus 1 Descriptor: Phosphoprotein Authors: Whitehead, J.D, Grimes, J.M, Keown, J.R. Deposit date: 2022-11-24 Release date: 2023-04-05 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural and biophysical characterization of the Borna disease virus 1 phosphoprotein. Acta Crystallogr.,Sect.F, 79, 2023
1XOK	crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide Descriptor: BROMIDE ION, Coat protein, alfalfa mosaic virus RNA 3' UTR Authors: Guogas, L.M, Filman, D.J, Hogle, J.M, Gehrke, L. Deposit date: 2004-10-06 Release date: 2005-01-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Cofolding organizes alfalfa mosaic virus RNA and coat protein for replication. Science, 306, 2004
1D4R	29-mer fragment of human srp rna helix 6 Descriptor: 29-MER OF MODIFIED SRP RNA HELIX 6, MAGNESIUM ION Authors: Wild, K, Weichenrieder, O, Leonard, G.A, Cusack, S. Deposit date: 1999-10-05 Release date: 1999-12-02 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: The 2 A structure of helix 6 of the human signal recognition particle RNA Structure Fold.Des., 7, 1999
462D	CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE Descriptor: MAGNESIUM ION, RNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3') Authors: Ennifar, E, Yusupov, M, Walter, P, Marquet, R, Ehresmann, C, Ehresmann, B, Dumas, P. Deposit date: 1999-03-18 Release date: 1999-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges. Structure Fold.Des., 7, 1999
1L9A	CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA Descriptor: MAGNESIUM ION, METHYL MERCURY ION, SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN, ... Authors: Oubridge, C, Kuglstatter, A, Jovine, L, Nagai, K. Deposit date: 2002-03-22 Release date: 2002-06-28 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle. Mol.Cell, 9, 2002
1JO7	Solution Structure of Influenza A Virus Promoter Descriptor: Influenza A virus promoter RNA Authors: Bae, S.-H, Cheong, H.-K, Lee, J.-H, Cheong, C, Kainosho, M, Choi, B.-S. Deposit date: 2001-07-27 Release date: 2001-09-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural features of an influenza virus promoter and their implications for viral RNA synthesis. Proc.Natl.Acad.Sci.USA, 98, 2001
4D26	Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA,ADP and Pi Descriptor: 5'-R(*UP*GP*AP*CP*AP*UP)-3', ADENOSINE-5'-DIPHOSPHATE, BMVLG PROTEIN, ... Authors: Spinelli, P, Pillai, R.S, Kadlec, J, Cusack, S. Deposit date: 2014-05-07 Release date: 2014-06-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts. Cell(Cambridge,Mass.), 157, 2014
283D	A CURVED RNA HELIX INCORPORATING AN INTERNAL LOOP WITH G-A AND A-A NON-WATSON-CRICK BASE PAIRING Descriptor: MANGANESE (II) ION, RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)-3') Authors: Baeyens, K.J, De Bondt, H.L, Pardi, A, Holbrook, S.R. Deposit date: 1996-09-03 Release date: 1996-09-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing. Proc.Natl.Acad.Sci.USA, 93, 1996

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