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7T74	HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Envelope ApexGT2 gp120, ... Authors: Berndsen, Z.T, Ward, A.B. Deposit date: 2021-12-14 Release date: 2022-09-28 Last modified: 2023-07-05 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors. Immunity, 55, 2022
7T76	HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Envelope ApexGT3 gp120, ... Authors: Berndsen, Z.T, Ward, A.B. Deposit date: 2021-12-14 Release date: 2022-09-28 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.43 Å) Cite: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors. Immunity, 55, 2022
7T77	HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Envelope ApexGT3.N130 gp120, ... Authors: Berndsen, Z.T, Ward, A.B. Deposit date: 2021-12-14 Release date: 2022-09-28 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (4.75 Å) Cite: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors. Immunity, 55, 2022
7T73	HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Envelope ApexGT2.2MUT gp120, ... Authors: Berndsen, Z.T, Ward, A.B. Deposit date: 2021-12-14 Release date: 2022-09-28 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors. Immunity, 55, 2022
5IHU	Crystal structure of bovine Fab B11 Descriptor: bovine Fab B11 heavy chain, bovine Fab B11 light chain Authors: Stanfield, R, Wilson, I. Deposit date: 2016-02-29 Release date: 2016-10-05 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Conservation and diversity in the ultralong third heavy-chain complementarity-determining region of bovine antibodies. Sci Immunol, 1, 2016
7EK0	Complex Structure of antibody BD-503 and RBD-N501Y of COVID-19 Descriptor: Heavy Chain of BD-503, Light Chain of BD-503, Spike protein S1 Authors: Xu, H, Wang, B, Zhao, T.N, Su, X.D. Deposit date: 2021-04-03 Release date: 2022-04-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure-based analyses of neutralization antibodies interacting with naturally occurring SARS-CoV-2 RBD variants. Cell Res., 31, 2021
7EJY	Complex Structure of antibody BD-503 and RBD of COVID-19 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of BD-503, Light Chain of BD-503, ... Authors: Xu, H, Wang, B, Zhao, T.N, Su, X.D. Deposit date: 2021-04-03 Release date: 2022-04-13 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Structure-based analyses of neutralization antibodies interacting with naturally occurring SARS-CoV-2 RBD variants. Cell Res., 31, 2021
7EJZ	Complex Structure of antibody BD-503 and RBD-S477N of COVID-19 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of BD-503, Light Chain of BD-503, ... Authors: Xu, H, Wang, B, Zhao, T.N, Su, X.D. Deposit date: 2021-04-03 Release date: 2022-04-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.63 Å) Cite: Structure-based analyses of neutralization antibodies interacting with naturally occurring SARS-CoV-2 RBD variants. Cell Res., 31, 2021
7F6Y	Complex Structure of antibody BD-503 and RBD-E484K of COVID-19 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of BD-503, Light Chain of BD-503, ... Authors: Xu, H, Wang, B, Zhao, T.N, Su, X.D. Deposit date: 2021-06-26 Release date: 2022-06-29 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure-based analyses of neutralization antibodies interacting with naturally occurring SARS-CoV-2 RBD variants. Cell Res., 31, 2021
7F6Z	Complex Structure of antibody BD-503 and RBD-501Y.V2 of COVID-19 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of BD-503, Light Chain of BD-503, ... Authors: Xu, H, Wang, B, Zhao, T.N, Su, X.D. Deposit date: 2021-06-26 Release date: 2022-06-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure-based analyses of neutralization antibodies interacting with naturally occurring SARS-CoV-2 RBD variants. Cell Res., 31, 2021
4M7Z	Unliganded 1 crystal structure of S25-26 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Haji-Ghassemi, O, Evans, S.V, Muller-Loennies, S, Saldova, R, Muniyappa, M, Brade, L, Rudd, P.M, Harvey, D.J, Kosma, P, Brade, H. Deposit date: 2013-08-12 Release date: 2014-04-09 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Groove-type Recognition of Chlamydiaceae-specific Lipopolysaccharide Antigen by a Family of Antibodies Possessing an Unusual Variable Heavy Chain N-Linked Glycan. J.Biol.Chem., 289, 2014
7KPJ	Crystal structure of Ruminococcus gnavus immunoglobulin binding protein in complex with 338E6 Fab Descriptor: 338E6 Fab heavy chain, 338E6 Fab light chain kappa, CALCIUM ION, ... Authors: Borowska, M.T, Adams, E.J. Deposit date: 2020-11-11 Release date: 2022-01-19 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The molecular characterization of antibody binding to a superantigen-like protein from a commensal microbe. Proc.Natl.Acad.Sci.USA, 118, 2021
7LNK	Gorilla Bocavirus 1 Capsid Descriptor: Capsid protein Authors: Yu, J.C, Mietzsch, M, Agbandje-McKenna, M. Deposit date: 2021-02-07 Release date: 2021-03-17 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Characterization of the GBoV1 Capsid and Its Antibody Interactions. Viruses, 13, 2021
7WRO	Local structure of BD55-3372 and delta spike Descriptor: 3372H, 3372L, Spike protein S1 Authors: Liu, P.L. Deposit date: 2022-01-27 Release date: 2022-06-22 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7WRL	Local structure of BD55-1239 Fab and SARS-COV2 Omicron RBD complex Descriptor: BD55-1239H, BD55-1239L, Spike protein S1 Authors: Zhang, Z.Z, Xiao, J.J. Deposit date: 2022-01-27 Release date: 2022-06-22 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.51 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7WRZ	Local resolution of BD55-5840 Fab and SARS-COV2 Omicron RBD Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BD55-5840H, BD55-5840L, ... Authors: Zhang, Z.Z, Xiao, J.J. Deposit date: 2022-01-28 Release date: 2022-06-22 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.26 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
4M93	Unliganded 2 crystal structure of S25-26 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CALCIUM ION, ... Authors: Haji-Ghassemi, O, Evans, S.V. Deposit date: 2013-08-14 Release date: 2014-04-09 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Groove-type Recognition of Chlamydiaceae-specific Lipopolysaccharide Antigen by a Family of Antibodies Possessing an Unusual Variable Heavy Chain N-Linked Glycan. J.Biol.Chem., 289, 2014
4Z9K	Ricin A chain bound to camelid nanobody (VHH2)(F5) Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Ricin, ... Authors: Rudolph, M.J. Deposit date: 2015-04-10 Release date: 2016-07-20 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural analysis of nested neutralizing and non-neutralizing B cell epitopes on ricin toxin's enzymatic subunit. Proteins, 84, 2016
7XIY	SARS-CoV-2 Omicron BA.3 variant spike Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Wang, L. Deposit date: 2022-04-14 Release date: 2022-07-13 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7XIX	SARS-CoV-2 Omicron BA.2 variant spike (state 2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Wang, L. Deposit date: 2022-04-14 Release date: 2022-07-13 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7XIW	SARS-CoV-2 Omicron BA.2 variant spike (state 1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Wang, L. Deposit date: 2022-04-14 Release date: 2022-07-13 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7XIZ	SARS-CoV-2 Omicron BA.3 variant spike (local) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1 Authors: Wang, X, Wang, L. Deposit date: 2022-04-14 Release date: 2022-07-13 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.74 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7X6A	SARS-CoV-2 BA.2 variant spike protein in complex with Fab BD55-5840 Descriptor: Heavy chain of Fab BD55-5840, Light chain of Fab BD55-5840, Spike glycoprotein Authors: Wang, X, Wang, L. Deposit date: 2022-03-07 Release date: 2022-07-13 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7XNS	SARS-CoV-2 Omicron BA.2.12.1 variant spike Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Wang, L. Deposit date: 2022-04-29 Release date: 2022-07-13 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.48 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022
7XNQ	SARS-CoV-2 Omicron BA.4 variant spike Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Wang, L. Deposit date: 2022-04-29 Release date: 2022-07-13 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.52 Å) Cite: BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

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