Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6WFN
DownloadVisualize
BU of 6wfn by Molmil
Crystal structure of human Naa50 in complex with AcCoA and an inhibitor (compound 4a) identified using DNA encoded library technology
Descriptor: (4S)-1-methyl-N-{(3S,5S)-5-[4-(methylcarbamoyl)-1,3-thiazol-2-yl]-1-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]pyrrolidin-3-yl}-2,6-dioxohexahydropyrimidine-4-carboxamide, ACETYL COENZYME *A, N-alpha-acetyltransferase 50
Authors:Greasley, S.E, Feng, J, Deng, Y.-L, Stewart, A.E.
Deposit date:2020-04-03
Release date:2020-07-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library.
Acs Med.Chem.Lett., 11, 2020
7VTD
DownloadVisualize
BU of 7vtd by Molmil
Unliganded structure of Pseudouridine kinase (PUKI) from Escherichia coli strain B
Descriptor: POTASSIUM ION, Pseudouridine kinase
Authors:Kim, S.H, Rhee, S.
Deposit date:2021-10-29
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1505487 Å)
Cite:Substrate-binding loop interactions with pseudouridine trigger conformational changes that promote catalytic efficiency of pseudouridine kinase PUKI.
J.Biol.Chem., 298, 2022
7VTE
DownloadVisualize
BU of 7vte by Molmil
uridine bound structure of Pseudouridine kinase (PUKI) from Escherichia coli strain B
Descriptor: POTASSIUM ION, Pseudouridine kinase, URIDINE
Authors:Kim, S.H, Rhee, S.
Deposit date:2021-10-29
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15296578 Å)
Cite:Substrate-binding loop interactions with pseudouridine trigger conformational changes that promote catalytic efficiency of pseudouridine kinase PUKI.
J.Biol.Chem., 298, 2022
5BQ2
DownloadVisualize
BU of 5bq2 by Molmil
Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (UDP-N-acetylglucosamine enolpyruvyl transferase, EPT) from Pseudomonas aeruginosa
Descriptor: MAGNESIUM ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID
Authors:SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2015-05-28
Release date:2015-07-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (UDP-N-acetylglucosamine enolpyruvyl transferase, EPT) from Pseudomonas aeruginosa
to be published
5GRR
DownloadVisualize
BU of 5grr by Molmil
Crystal structure of MCR-1
Descriptor: GLYCEROL, Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION
Authors:Ma, G, Zhu, Y, Yu, Z, Zhang, H.
Deposit date:2016-08-12
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High resolution crystal structure of the catalytic domain of MCR-1
Sci Rep, 6, 2016
5BUF
DownloadVisualize
BU of 5buf by Molmil
2.37 Angstrom Structure of EPSP Synthase from acinetobacter baumannii
Descriptor: 3-phosphoshikimate 1-carboxyvinyltransferase, CHLORIDE ION
Authors:Sutton, K.A, Schultz, L.W, Breen, J, Graham, J, Umland, T.C.
Deposit date:2015-06-03
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure of 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase from the ESKAPE pathogen Acinetobacter baumannii.
Acta Crystallogr.,Sect.F, 72, 2016
6WF3
DownloadVisualize
BU of 6wf3 by Molmil
Crystal structure of human Naa50 in complex with a cofactor derived inhibitor (compound 1)
Descriptor: ACE-MET-LEU-GLY-PRO-NH2, COENZYME A, N-alpha-acetyltransferase 50
Authors:Greasley, S.E, Feng, J, Deng, Y.-L, Stewart, A.E.
Deposit date:2020-04-03
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.291 Å)
Cite:Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library.
Acs Med.Chem.Lett., 11, 2020
7VY3
DownloadVisualize
BU of 7vy3 by Molmil
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
Authors:Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2021-11-13
Release date:2022-04-27
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
5GTI
DownloadVisualize
BU of 5gti by Molmil
Native XFEL structure of photosystem II (two flash dataset)
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Suga, M, Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
7VOT
DownloadVisualize
BU of 7vot by Molmil
The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-2
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN B, ...
Authors:Cao, P, Li, M, Liu, L.N.
Deposit date:2021-10-14
Release date:2022-04-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VOR
DownloadVisualize
BU of 7vor by Molmil
The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-1
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Cao, P, Li, M, Liu, L.N.
Deposit date:2021-10-14
Release date:2022-04-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
8BC2
DownloadVisualize
BU of 8bc2 by Molmil
Ligand-Free Structure of the decameric sulfofructose transaldolase BmSF-TAL
Descriptor: Transaldolase
Authors:Snow, A.J.D, Sharma, M, Blaza, J, Davies, G.J.
Deposit date:2022-10-14
Release date:2023-01-18
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structure and mechanism of sulfofructose transaldolase, a key enzyme in sulfoquinovose metabolism.
Structure, 31, 2023
7VB9
DownloadVisualize
BU of 7vb9 by Molmil
Rba sphaeroides PufY-KO RC-LH1 dimer type-2
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-08-30
Release date:2022-05-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VY2
DownloadVisualize
BU of 7vy2 by Molmil
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
Authors:Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2021-11-13
Release date:2022-04-27
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
7VA9
DownloadVisualize
BU of 7va9 by Molmil
Rba sphaeroides PufY-KO RC-LH1 dimer type-1
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN B, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-08-27
Release date:2022-05-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
8BC4
DownloadVisualize
BU of 8bc4 by Molmil
Cryo-EM Structure of a BmSF-TAL - Sulfofructose Schiff Base Complex in symmetry group C1
Descriptor: (2~{R},3~{S},4~{S})-2,3,4,6-tetrakis(oxidanyl)hexane-1-sulfonic acid, Transaldolase
Authors:Snow, A.J.D, Sharma, M, Blaza, J, Davies, G.J.
Deposit date:2022-10-14
Release date:2023-01-18
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure and mechanism of sulfofructose transaldolase, a key enzyme in sulfoquinovose metabolism.
Structure, 31, 2023
5H2F
DownloadVisualize
BU of 5h2f by Molmil
Crystal structure of the PsbM-deletion mutant of photosystem II
Descriptor: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Uto, S, Kawakami, K, Umena, Y, Iwai, M, Ikeuchi, M, Shen, J.R, Kamiya, N.
Deposit date:2016-10-15
Release date:2017-03-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II.
Faraday Discuss., 198, 2017
2Q3B
DownloadVisualize
BU of 2q3b by Molmil
1.8 A Resolution Crystal Structure of O-Acetylserine Sulfhydrylase (OASS) Holoenzyme From MYCOBACTERIUM TUBERCULOSIS
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Cysteine synthase A
Authors:Schneider, G, Schnell, R.
Deposit date:2007-05-30
Release date:2007-06-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Insights into Catalysis and Inhibition of O-Acetylserine Sulfhydrylase from Mycobacterium tuberculosis: CRYSTAL STRUCTURES OF THE ENZYME {alpha}-AMINOACRYLATE INTERMEDIATE AND AN ENZYME-INHIBITOR COMPLEX.
J.Biol.Chem., 282, 2007
5I7H
DownloadVisualize
BU of 5i7h by Molmil
Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 6 [3-(3-(4-Bromophenyl)ureido)benzoic acid]
Descriptor: 3-{[(4-bromophenyl)carbamoyl]amino}benzoic acid, CHLORIDE ION, O-phosphoserine sulfhydrylase, ...
Authors:Schnell, R, Maric, S, Schneider, G.
Deposit date:2016-02-17
Release date:2016-08-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Inhibitors of the Cysteine Synthase CysM with Antibacterial Potency against Dormant Mycobacterium tuberculosis.
J.Med.Chem., 59, 2016
5ZMV
DownloadVisualize
BU of 5zmv by Molmil
Crystal structure of the E309A mutant of SR Ca2+-ATPase in E2(TG)
Descriptor: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, ...
Authors:Ogawa, H, Hirata, A, Tsueda, J, Toyoshima, C.
Deposit date:2018-04-06
Release date:2018-12-12
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Mechanism of the E2 to E1 transition in Ca2+pump revealed by crystal structures of gating residue mutants.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5CUO
DownloadVisualize
BU of 5cuo by Molmil
Structure of Rhodopseudomonas palustris PduL - CoA bound form
Descriptor: COENZYME A, Phosphate propanoyltransferase, ZINC ION
Authors:Sutter, M, Erbilgin, O, Kerfeld, C.A.
Deposit date:2015-07-24
Release date:2016-03-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.544 Å)
Cite:The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle.
Plos Biol., 14, 2016
2HHK
DownloadVisualize
BU of 2hhk by Molmil
Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with dibrominated phosphatidylglycerol
Descriptor: (1R)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (9S,10S)-9,10-DIBROMOOCTADECANOATE, (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, BACTERIOCHLOROPHYLL A, ...
Authors:Roszak, A.W, Gardiner, A.T, Isaacs, N.W, Cogdell, R.J.
Deposit date:2006-06-28
Release date:2007-03-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Brominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides.
Biochemistry, 46, 2007
8B64
DownloadVisualize
BU of 8b64 by Molmil
Cryo-EM structure of RC-LH1-PufX photosynthetic core complex from Rba. capsulatus
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Bracun, L, Yamagata, A, Shirouzu, M, Liu, L.N.
Deposit date:2022-09-26
Release date:2023-02-01
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.589 Å)
Cite:Cryo-EM structure of a monomeric RC-LH1-PufX supercomplex with high-carotenoid content from Rhodobacter capsulatus.
Structure, 31, 2023
2Q6O
DownloadVisualize
BU of 2q6o by Molmil
SalL-Y70T with SAM and Cl
Descriptor: CHLORIDE ION, Hypothetical Protein, S-ADENOSYLMETHIONINE
Authors:Noel, J.P, Pojer, F.
Deposit date:2007-06-05
Release date:2007-12-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery and characterization of a marine bacterial SAM-dependent chlorinase
Nat.Chem.Biol., 4, 2008
3M10
DownloadVisualize
BU of 3m10 by Molmil
Substrate-free form of Arginine Kinase
Descriptor: Arginine kinase, SULFATE ION
Authors:Yousef, M.S, Clark, S.A, Pruett, P.K, Somasundaram, T, Ellington, W.R, Chapman, M.S.
Deposit date:2010-03-03
Release date:2010-03-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.727 Å)
Cite:Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.
J.Mol.Biol., 405, 2011

223790

건을2024-08-14부터공개중

PDB statisticsPDBj update infoContact PDBjnumon