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9C7S
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BU of 9c7s by Molmil
Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab COV-3891 heavy chain, Fab COV-3891 light chain, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2024-06-11
Release date:2025-10-08
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
To Be Published
3G5T
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BU of 3g5t by Molmil
Crystal structure of trans-aconitate 3-methyltransferase from yeast
Descriptor: (2E)-2-(2-methoxy-2-oxoethyl)but-2-enedioic acid, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Burgie, E.S, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-02-05
Release date:2009-03-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.119 Å)
Cite:Crystal structure of trans-aconitate 3-methyltransferase from yeast
To be Published
4DD3
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BU of 4dd3 by Molmil
EVAL processed HEWL, carboplatin aqueous paratone
Descriptor: 2-methylprop-1-ene, CHLORIDE ION, Lysozyme C
Authors:Tanley, S.W, Schreurs, A.M, Kroon-Batenburg, L.M, Meredith, J, Prendergast, R, Walsh, D, Bryant, P, Levy, C, Helliwell, J.R.
Deposit date:2012-01-18
Release date:2012-04-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural studies of the effect that dimethyl sulfoxide (DMSO) has on cisplatin and carboplatin binding to histidine in a protein.
Acta Crystallogr.,Sect.D, 68, 2012
7LTX
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BU of 7ltx by Molmil
EGFR (T790M/V948R) in complex with quinazolinone allosteric inhibitor
Descriptor: (2R)-2-{5-fluoro-6-[4-(1-methylpiperidin-4-yl)phenyl]-4-oxoquinazolin-3(4H)-yl}-2-phenyl-N-(1,3-thiazol-2-yl)acetamide, Epidermal growth factor receptor, MAGNESIUM ION, ...
Authors:Beyett, T.S, Eck, M.J.
Deposit date:2021-02-20
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Quinazolinones as allosteric fourth-generation EGFR inhibitors for the treatment of NSCLC.
Bioorg.Med.Chem.Lett., 68, 2022
7A6Z
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BU of 7a6z by Molmil
Structure of P226G BlaC from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, GLYCEROL, ...
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-27
Release date:2021-10-06
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Conserved proline residues prevent dimerization and aggregation in the beta-lactamase BlaC.
Protein Sci., 33, 2024
7Z8E
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BU of 7z8e by Molmil
Crystal structure of the substrate-binding protein YejA from S. meliloti in complex with peptide fragment
Descriptor: 1,2-ETHANEDIOL, ABC transporter substrate-binding protein, GLY-SER-ASP-VAL-ALA, ...
Authors:Morera, S, Vigouroux, V, Travin, D.Y.
Deposit date:2022-03-17
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Dual-Uptake Mode of the Antibiotic Phazolicin Prevents Resistance Acquisition by Gram-Negative Bacteria.
Mbio, 14, 2023
4DEG
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BU of 4deg by Molmil
Crystal structure of c-Met in complex with triazolopyridazine inhibitor 2
Descriptor: 7-methoxy-N-{[6-(3-methyl-1,2-thiazol-5-yl)[1,2,4]triazolo[4,3-b]pyridazin-3-yl]methyl}-1,5-naphthyridin-4-amine, Hepatocyte growth factor receptor
Authors:Whittington, D.A, Bellon, S.F, Long, A.M.
Deposit date:2012-01-20
Release date:2012-05-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery and optimization of a potent and selective triazolopyridinone series of c-Met inhibitors.
Bioorg.Med.Chem.Lett., 22, 2012
4W4O
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BU of 4w4o by Molmil
High-resolution crystal structure of Fc bound to its human receptor Fc-gamma-RI
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Kiyoshi, M, Tsumoto, K.
Deposit date:2014-08-15
Release date:2015-04-29
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for binding of human IgG1 to its high-affinity human receptor Fc gamma RI
Nat Commun, 6, 2015
5VD5
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BU of 5vd5 by Molmil
CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH RAC-IV-050, a MK1775 analougue
Descriptor: 1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(morpholin-4-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo [3,4-d]pyrimidin-3-one, CHLORIDE ION, Wee1-like protein kinase
Authors:Zhu, J.-Y, Schonbrunn, E.
Deposit date:2017-04-01
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of Wee family kinase inhibition by small molecules
to be published
5I3W
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BU of 5i3w by Molmil
Crystal structure of BACE1 in complex with 2-aminooxazoline-3-azaxanthene inhibitor 2
Descriptor: Beta-secretase 1, GLYCEROL, IODIDE ION, ...
Authors:Whittington, D.A, Long, A.M.
Deposit date:2016-02-11
Release date:2016-03-30
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Fragment-Linking Approach Using (19)F NMR Spectroscopy To Obtain Highly Potent and Selective Inhibitors of beta-Secretase.
J.Med.Chem., 59, 2016
5I46
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BU of 5i46 by Molmil
Factor VIIA in complex with the inhibitor (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-hydroxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.1~6,10~]henicosa-1(18),6(21),7,9,16,19-hexaene-3,12-dione
Descriptor: (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-hydroxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.1~6,10~]henicosa-1(18),6(21),7,9,16,19-hexaene-3,12-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Wei, A.
Deposit date:2016-02-11
Release date:2016-06-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Atropisomer Control in Macrocyclic Factor VIIa Inhibitors.
J.Med.Chem., 59, 2016
2C6F
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BU of 2c6f by Molmil
Structure of human somatic angiontensin-I converting enzyme N domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Corradi, H.R, Schwager, S.L.U, Nichinda, A, Sturrock, E.D, Acharya, K.R.
Deposit date:2005-11-09
Release date:2006-11-08
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal Structure of the N Domain of Human Somatic Angiotensin I-Converting Enzyme Provides a Structural Basis for Domain-Specific Inhibitor Design.
J.Mol.Biol., 357, 2006
2BXZ
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BU of 2bxz by Molmil
Is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, MAGNESIUM ION, ...
Authors:Leiros, H.-K.S, Timmins, J, Ravelli, R.B.G, McSweeney, S.M.
Deposit date:2005-07-28
Release date:2006-02-06
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection?
Acta Crystallogr.,Sect.D, 62, 2006
7Z0Q
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BU of 7z0q by Molmil
MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Descriptor: 1,2-ETHANEDIOL, CLIP peptide, HLA class II histocompatibility antigen, ...
Authors:Roske, Y, Abualrous, E.T, Freund, C.
Deposit date:2022-02-23
Release date:2023-03-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange.
Nat.Chem.Biol., 19, 2023
9CMI
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BU of 9cmi by Molmil
Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin, sFab COP-1, and Nanobody
Descriptor: Anti-Fab Nanobody, COP-1 sFab Heavy Chain, COP-1 sFab Light Chain, ...
Authors:Vecchio, A.J.
Deposit date:2024-07-15
Release date:2024-08-07
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Cryo-EM structures of Clostridium perfringens enterotoxin bound to its human receptor, claudin-4.
Structure, 32, 2024
3T0T
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BU of 3t0t by Molmil
Crystal structure of S. aureus Pyruvate Kinase
Descriptor: N'-[(1E)-1-(1H-benzimidazol-2-yl)ethylidene]-5-bromo-2-hydroxybenzohydrazide, PHOSPHATE ION, Pyruvate kinase
Authors:Worrall, L.J, Vuckovic, M, Strynadka, N.C.J.
Deposit date:2011-07-20
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Cheminformatics-driven discovery of selective, nanomolar inhibitors for staphylococcal pyruvate kinase.
Acs Chem.Biol., 7, 2012
8QUL
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BU of 8qul by Molmil
Hexameric HIV-1 CA in complex with DDD00100555
Descriptor: 3-(BENZYLOXY)PYRIDIN-2-AMINE, Spacer peptide 1
Authors:Petit, A.P, Fyfe, P.K.
Deposit date:2023-10-16
Release date:2024-03-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Application of an NMR/Crystallography Fragment Screening Platform for the Assessment and Rapid Discovery of New HIV-CA Binding Fragments.
Chemmedchem, 19, 2024
4DLE
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BU of 4dle by Molmil
Ternary Structure of the large Fragment of Taq DNA Polymerase: 4-Fluoroproline Variant
Descriptor: 1,2-ETHANEDIOL, 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA polymerase I, ...
Authors:Holzberger, B, Obeid, S, Welte, W, Diederichs, K, Marx, A.
Deposit date:2012-02-06
Release date:2012-11-28
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural insights into the potential of 4-fluoroproline to modulate biophysical properties of protein
Chem Sci, 3, 2012
3GBH
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BU of 3gbh by Molmil
CRYSTAL STRUCTURE OF A PUTATIVE NAD(P)H:FMN OXIDOREDUCTASE (SE1966) FROM STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228 AT 2.00 A RESOLUTION
Descriptor: CALCIUM ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-02-19
Release date:2009-03-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_765521.1) from Staphylococcus epidermidis ATCC 12228 at 2.00 A resolution
To be published
1KJ2
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BU of 1kj2 by Molmil
Murine Alloreactive ScFv TCR-Peptide-MHC Class I Molecule Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Allogeneic H-2Kb MHC Class I Molecule, Beta-2 microglobulin, ...
Authors:Reiser, J.-B, Gregoire, C, Darnault, C, Mosser, T, Guimezanes, A, Schmitt-Verhulst, A.-M, Fontecilla-Camps, J.C, Mazza, G, Malissen, B, Housset, D.
Deposit date:2001-12-04
Release date:2002-03-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A T cell receptor CDR3beta loop undergoes conformational changes of unprecedented magnitude upon binding to a peptide/MHC class I complex.
Immunity, 16, 2002
5II5
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BU of 5ii5 by Molmil
Crystal structure of red abalone VERL repeat 1 at 1.8 A resolution
Descriptor: Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor, TRIETHYLENE GLYCOL, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Sadat Al-Hosseini, H, Raj, I, Nishimura, K, Jovine, L.
Deposit date:2016-03-01
Release date:2017-06-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of Egg Coat-Sperm Recognition at Fertilization.
Cell, 169, 2017
7Z0I
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BU of 7z0i by Molmil
human PEX13 SH3 domain
Descriptor: 1,2-ETHANEDIOL, Peroxisomal membrane protein PEX13, ZINC ION
Authors:Gaussmann, S, Zak, K, Sattler, M.
Deposit date:2022-02-23
Release date:2023-03-08
Last modified:2025-09-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Modulation of peroxisomal import by the PEX13 SH3 domain and a proximal FxxxF binding motif.
Nat Commun, 15, 2024
5VO2
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BU of 5vo2 by Molmil
DLK in complex with inhibitor 5-(1-isopropyl-5-(1-(oxetan-3-yl)piperidin-4-yl)-1H-pyrazol-3-yl)-3-(trifluoromethyl)pyridin-2-amine (compound 7)
Descriptor: 5-{5-[1-(oxetan-3-yl)piperidin-4-yl]-1-(propan-2-yl)-1H-pyrazol-3-yl}-3-(trifluoromethyl)pyridin-2-amine, Mitogen-activated protein kinase kinase kinase 12
Authors:HARRIS, S.F, YIN, J.
Deposit date:2017-05-01
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Selective Inhibitors of Dual Leucine Zipper Kinase (DLK, MAP3K12) with Activity in a Model of Alzheimer's Disease.
J. Med. Chem., 60, 2017
4LV8
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BU of 4lv8 by Molmil
Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Reese, M.L, Boothroyd, J.C.
Deposit date:2013-07-26
Release date:2013-09-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI
To be Published
5VPC
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BU of 5vpc by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-II crystal
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M.C, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017

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