PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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2LX1	Major Conformation of the Internal Loop 5'GAGU/3'UGAG Descriptor: RNA (5'-R(*GP*AP*CP*GP*AP*GP*UP*GP*UP*CP*A)-3') Authors: Kennedy, S.D, Turner, D.H. Deposit date: 2012-08-12 Release date: 2012-11-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Novel conformation of an RNA structural switch. Biochemistry, 51, 2012
7EDU	RNA duplex containing C-Au-C base pair Descriptor: GOLD ION, RNA (5'-R(*GP*GP*AP*CP*UP*CP*GP*AP*CP*UP*CP*C)-3') Authors: Kondo, J, Iwase, E. Deposit date: 2021-03-17 Release date: 2022-03-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: RNA duplex containing C-Au-C base pair To Be Published
7ECK	RNA duplex containing C-Ag-A and U-Ag-A base pairs Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION Authors: Kondo, J, Uchida, Y. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: RNA duplex containing C-Ag-A and U-Ag-A base pairs To Be Published
7ECJ	RNA duplex containing C-A base pairs Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') Authors: Kondo, J, Uchida, Y. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.1 Å) Cite: RNA duplex containing C-A base pairs To Be Published
7ECM	RNA duplex containing C-A base pair Descriptor: BARIUM ION, RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3') Authors: Kondo, J, Tsudura, A. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.51 Å) Cite: RNA duplex containing C-A base pair To Be Published
7ECL	RNA duplex containing C-Ag-A and U-Ag-A base pair Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION Authors: Kondo, J, Uchida, Y. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.01 Å) Cite: RNA duplex containing C-Ag-A and U-Ag-A base pair To Be Published
7EEM	RNA bulged-G motif Descriptor: IRIDIUM ION, RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.593 Å) Cite: RNA bulged-G motif To Be Published
7EI7	RNA kink-turn motif with 2-aminopurine Descriptor: COBALT (II) ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Saisu, S. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: RNA kink-turn motif with 2-aminopurine To Be Published
7EI8	RNA kink-turn motif with 2-aminopurine Descriptor: COBALT (II) ION, RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Saisu, S. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.1 Å) Cite: RNA kink-turn motif with 2-aminopurine To Be Published
7EIA	RNA kink-turn motif with pyrrolo cytosine Descriptor: POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Miyauchi, T. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3 Å) Cite: RNA kink-turn motif with pyrrolo cytosine To Be Published
2O9T	beta-glucosidase B from Bacillus polymyxa complexed with glucose Descriptor: Beta-glucosidase B, beta-D-glucopyranose Authors: Isorna, P, Polaina, J, Sanz-Aparicio, J. Deposit date: 2006-12-14 Release date: 2007-10-02 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structures of Paenibacillus polymyxa beta-Glucosidase B Complexes Reveal the Molecular Basis of Substrate Specificity and Give New Insights into the Catalytic Machinery of Family I Glycosidases J.Mol.Biol., 371, 2007
2O9R	beta-glucosidase B complexed with thiocellobiose Descriptor: Beta-glucosidase B, beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose Authors: Isorna, P, Polaina, J, Sanz-Aparicio, J. Deposit date: 2006-12-14 Release date: 2007-10-02 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of Paenibacillus polymyxa beta-Glucosidase B Complexes Reveal the Molecular Basis of Substrate Specificity and Give New Insights into the Catalytic Machinery of Family I Glycosidases J.Mol.Biol., 371, 2007
7F8Z	RNA kink-turn motif with 2-aminopurine Descriptor: POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Miyauchi, T. Deposit date: 2021-07-03 Release date: 2022-07-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3 Å) Cite: RNA kink-turn motif with 2-aminopurine To Be Published
1KAJ	CONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS, NMR, 1 STRUCTURE Descriptor: RNA PSEUDOKNOT APK Authors: Kang, H, Hines, J.V, Tinoco Junior, I. Deposit date: 1996-02-21 Release date: 1996-07-11 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus. J.Mol.Biol., 259, 1996
1WOY	Crystal structure of methionyl tRNA synthetase Y225F mutant from Thermus thermophilus Descriptor: Methionyl-tRNA synthetase, ZINC ION Authors: Konno, M, Takeda, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-08-27 Release date: 2005-09-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of methionyl tRNA synthetase Y225F mutant from Thermus thermophilus TO BE PUBLISHED
2RN1	Liquid crystal solution structure of the kissing complex formed by the apical loop of the HIV TAR RNA and a high affinity RNA aptamer optimized by SELEX Descriptor: RNA (5'-R(P*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3'), RNA (5'-R(P*GP*CP*UP*GP*GP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3') Authors: Van Melckebeke, H, Devany, M, Di Primo, C, Beaurain, F, Toulme, J, Bryce, D.L, Boisbouvier, J. Deposit date: 2007-12-05 Release date: 2008-09-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex Proc.Natl.Acad.Sci.Usa, 105, 2008
4WKG	The crystal structure of apo ArnA features an unexpected central binding pocket and provides an explanation for enzymatic coop-erativity Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ACETATE ION, Bifunctional polymyxin resistance protein ArnA Authors: Grimm, C. Deposit date: 2014-10-02 Release date: 2014-12-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The structure of apo ArnA features an unexpected central binding pocket and provides an explanation for enzymatic cooperativity. Acta Crystallogr.,Sect.D, 71, 2015
2NQZ	Trna-guanine transglycosylase (TGT) mutant in complex with 7-deaza-7-aminomethyl-guanine Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, GLYCEROL, Queuine tRNA-ribosyltransferase, ... Authors: Tidten, N, Heine, A, Reuter, K, Klebe, G. Deposit date: 2006-11-01 Release date: 2007-11-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor Plos One, 8, 2013
2NSO	Trna-gunanine-transglycosylase (TGT) mutant Y106F, C158V, A232S, V233G- APO-Structure Descriptor: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION Authors: Tidten, N, Heine, A, Reuter, K, Klebe, G. Deposit date: 2006-11-06 Release date: 2007-12-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor. Plos One, 8, 2013
1RNG	SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF Descriptor: RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3') Authors: Jucker, F.M, Pardi, A. Deposit date: 1995-09-05 Release date: 1995-12-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif. Biochemistry, 34, 1995
1RHT	24-MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR BACTERIOPHAGE R17 (NMR, MINIMIZED AVERAGE STRUCTURE) Descriptor: RNA (5'-R(P*GP*GP*GP*AP*CP*UP*GP*AP*CP*GP*AP*UP*CP*AP*CP*GP*CP*AP*GP*UP*CP*UP*AP*U)-3') Authors: Borer, P.N, Lin, Y, Wang, S, Roggenbuck, M.W, Gott, J.M, Uhlenbeck, O.C, Pelczer, I. Deposit date: 1995-03-03 Release date: 1995-06-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Proton NMR and structural features of a 24-nucleotide RNA hairpin. Biochemistry, 34, 1995
2M8K	A pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo Descriptor: RNA (48-MER) Authors: Cash, D.D, Cohen, O, Kim, N, Shefer, K, Brown, Y, Ulyanov, N.B, Tzfati, Y, Feigon, J. Deposit date: 2013-05-22 Release date: 2013-06-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo. Proc.Natl.Acad.Sci.USA, 110, 2013
4YU7	Crystal structure of Piratoxin I (PrTX-I) complexed to caffeic acid Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Basic phospholipase A2 homolog piratoxin-1, CAFFEIC ACID, ... Authors: Fernandes, C.A.H, Fontes, M.R.M. Deposit date: 2015-03-18 Release date: 2015-08-05 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.647 Å) Cite: Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids. Plos One, 10, 2015
1RAU	SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURES Descriptor: RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') Authors: Cheong, C, Moore, P.B. Deposit date: 1993-07-29 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an unusually stable RNA tetraplex containing G- and U-quartet structures. Biochemistry, 31, 1992
2OOM	NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA/RNA aptamer Descriptor: RNA 16-mer, TAR RNA element of HIV-1 Authors: Lebars, I, Richard, T, Di Primo, C, Toulme, J.J. Deposit date: 2007-01-26 Release date: 2008-01-29 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer Nucleic Acids Res., 35, 2007

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