Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7PBR
DownloadVisualize
BU of 7pbr by Molmil
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s0-A [t2 dataset]
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Holliday junction ATP-dependent DNA helicase RuvB, MAGNESIUM ION, ...
Authors:Goessweiner-Mohr, N, Fahrenkamp, D, Wald, J, Marlovits, T.C.
Deposit date:2021-08-02
Release date:2022-09-14
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration.
Nature, 609, 2022
7PBS
DownloadVisualize
BU of 7pbs by Molmil
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s0+A [t1 dataset]
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Holliday junction ATP-dependent DNA helicase RuvA, Holliday junction ATP-dependent DNA helicase RuvB, ...
Authors:Goessweiner-Mohr, N, Fahrenkamp, D, Wald, J, Marlovits, T.C.
Deposit date:2021-08-02
Release date:2022-09-14
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration.
Nature, 609, 2022
6WYI
DownloadVisualize
BU of 6wyi by Molmil
Crystal structure of EchA19, enoyl-CoA hydratase from Mycobacterium tuberculosis
Descriptor: EchA19, enoyl-CoA hydratase, MAGNESIUM ION
Authors:Bonds, A.C, Garcia-Diaz, M, Sampson, N.S.
Deposit date:2020-05-13
Release date:2020-07-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.915 Å)
Cite:Post-translational Succinylation ofMycobacterium tuberculosisEnoyl-CoA Hydratase EchA19 Slows Catalytic Hydration of Cholesterol Catabolite 3-Oxo-chol-4,22-diene-24-oyl-CoA.
Acs Infect Dis., 6, 2020
7Z83
DownloadVisualize
BU of 7z83 by Molmil
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Open state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7ZC5
DownloadVisualize
BU of 7zc5 by Molmil
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Resting state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-25
Release date:2022-09-21
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7Z84
DownloadVisualize
BU of 7z84 by Molmil
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Open-ready state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7Z7T
DownloadVisualize
BU of 7z7t by Molmil
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Open state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7Z7S
DownloadVisualize
BU of 7z7s by Molmil
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Closed state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7Z80
DownloadVisualize
BU of 7z80 by Molmil
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Closed state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7Z7V
DownloadVisualize
BU of 7z7v by Molmil
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Open-ready state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.29 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7Z7R
DownloadVisualize
BU of 7z7r by Molmil
Complex I from E. coli, LMNG-purified, Apo, Open-ready state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CALCIUM ION, EICOSANE, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-16
Release date:2022-09-21
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7ZCI
DownloadVisualize
BU of 7zci by Molmil
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Resting state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ...
Authors:Kravchuk, V, Kampjut, D, Sazanov, L.
Deposit date:2022-03-28
Release date:2022-09-21
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:A universal coupling mechanism of respiratory complex I.
Nature, 609, 2022
7PCQ
DownloadVisualize
BU of 7pcq by Molmil
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:1 complex
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated surface determinant protein B, ...
Authors:De Bei, O, Gianquinto, E, Chirgadze, D.Y, Hardwick, S.W, Spyrakis, F, Luisi, B.F, Campanini, B.
Deposit date:2021-08-03
Release date:2022-04-13
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Cryo-EM structures of staphylococcal IsdB bound to human hemoglobin reveal the process of heme extraction.
Proc.Natl.Acad.Sci.USA, 119, 2022
4EQF
DownloadVisualize
BU of 4eqf by Molmil
Trip8b-1a#206-567 interacting with the carboxy-terminal seven residues of HCN2
Descriptor: PEX5-related protein, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
Authors:Bankston, J.R, Camp, S.S, Dimaio, F, Lewis, A.S, Chetkovich, D.M, Zagotta, W.N.
Deposit date:2012-04-18
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and stoichiometry of an accessory subunit TRIP8b interaction with hyperpolarization-activated cyclic nucleotide-gated channels.
Proc.Natl.Acad.Sci.USA, 109, 2012
9NLG
DownloadVisualize
BU of 9nlg by Molmil
CBASS Pseudomonas syringae Cap5 tetramer with 3'2'-c-GAMP cyclic dinucleotide ligand (His56Ala mutant without Mg2+ ions)
Descriptor: 3'2'-cGAMP, GLYCEROL, HNH endonuclease, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2025-03-03
Release date:2025-06-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Mechanism of DNA degradation by CBASS Cap5 endonuclease immune effector.
Nat Commun, 16, 2025
7S3F
DownloadVisualize
BU of 7s3f by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with its inhibitor 1-amino-oxy-3-aminopropane
Descriptor: 3-AMINOOXY-1-AMINOPROPANE, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
Deposit date:2021-09-06
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
7S3G
DownloadVisualize
BU of 7s3g by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with citrate at the catalytic center
Descriptor: CITRIC ACID, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
Deposit date:2021-09-06
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
7C2O
DownloadVisualize
BU of 7c2o by Molmil
Crystal structure of the R-specific Carbonyl Reductase from Candida parapsilosis ATCC 7330 without DTT
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, R-specific carbonyl reductase, ...
Authors:Vinaykumar, K, KanalElamparithi, B, Chaudhury, D, Gunasekaran, K, Chadha, A.
Deposit date:2020-05-08
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the R-specific Carbonyl Reductase from Candida parapsilosis ATCC 7330 without DTT
To Be Published
7BH4
DownloadVisualize
BU of 7bh4 by Molmil
XFEL structure of apo CTX-M-15 after mixing for 0.7 sec with ertapenem using a piezoelectric injector (PolyPico)
Descriptor: Beta-lactamase, SULFATE ION
Authors:Hinchliffe, P, Tooke, C.L, Butryn, A, Spencer, J.
Deposit date:2021-01-10
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021
7BHN
DownloadVisualize
BU of 7bhn by Molmil
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 2 s mixing with N-acetyl-D-glucosamine.
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme, ...
Authors:Butryn, A, Orville, A.M.
Deposit date:2021-01-11
Release date:2021-07-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021
7BH5
DownloadVisualize
BU of 7bh5 by Molmil
XFEL structure of the ertapenem-derived CTX-M-15 acylenzyme after mixing for 2 sec using a piezoelectric injector (PolyPico)
Descriptor: (2~{S},3~{R},4~{R})-3-[5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-4-methyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, Beta-lactamase, CHLORIDE ION, ...
Authors:Hinchliffe, P, Tooke, C.L, Butryn, A, Spencer, J.
Deposit date:2021-01-10
Release date:2021-07-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021
7BHM
DownloadVisualize
BU of 7bhm by Molmil
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 0.7 s mixing with N-acetyl-D-glucosamine.
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme, ...
Authors:Butryn, A, Orville, A.M.
Deposit date:2021-01-11
Release date:2021-07-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021
7BH7
DownloadVisualize
BU of 7bh7 by Molmil
Room temperature, serial X-ray structure of the ertapenem-derived acylenzyme of CTX-M-15 (10 min soak) collected on fixed target chips at Diamond Light Source I24
Descriptor: (2~{S},3~{R},4~{R})-3-[5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-4-methyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, Beta-lactamase, CHLORIDE ION, ...
Authors:Hinchliffe, P, Tooke, C.L, Butryn, A, Spencer, J.
Deposit date:2021-01-10
Release date:2021-07-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021
7BH6
DownloadVisualize
BU of 7bh6 by Molmil
Room temperature, serial X-ray structure of CTX-M-15 collected on fixed target chips at Diamond Light Source I24
Descriptor: Beta-lactamase, CHLORIDE ION, SODIUM ION, ...
Authors:Hinchliffe, P, Tooke, C.L, Butryn, A, Spencer, J.
Deposit date:2021-01-10
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021
7BHK
DownloadVisualize
BU of 7bhk by Molmil
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method.
Descriptor: CHLORIDE ION, Lysozyme, SODIUM ION
Authors:Butryn, A, Orville, A.M.
Deposit date:2021-01-11
Release date:2021-07-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.
Nat Commun, 12, 2021

239149

건을2025-07-23부터공개중

PDB statisticsPDBj update infoContact PDBjnumon