PDB: 681 resultsInfo pagesStatus searchChemie searchBIRD

---

8QKX	Solution structure of a bimolecular quadruplex-duplex hybrid containing a V-shaped loop Descriptor: DNA (5'-D(*CP*TP*CP*CP*AP*GP*CP*TP*GP*GP*GP*TP*GP*AP*GP*GP*GP*GP*CP*TP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*GP*AP*GP*CP*TP*GP*GP*AP*GP*TP*T)-3') Authors: Vianney, Y.M, Weisz, K. Deposit date: 2023-09-18 Release date: 2024-02-07 Method: SOLUTION NMR Cite: Structural Aspects of Split G-Quadruplexes in Quadruplex-Duplex Hybrid Systems Chemistryselect, 2024
1KF1	Structure and Packing of Human Telomeric DNA Descriptor: 5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3, POTASSIUM ION Authors: Parkinson, G.N, Lee, M.P.H, Neidle, S. Deposit date: 2001-11-19 Release date: 2002-05-31 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 2002
4Q9Q	Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with Fab Descriptor: (5Z)-5-(3-bromobenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, Fab BL3-6, HEAVY CHAIN, ... Authors: Huang, H, Suslov, N.B, Li, N.-S, Shelke, S.A, Evans, M.E, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. Deposit date: 2014-05-01 Release date: 2014-06-18 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.45 Å) Cite: A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
4WO3	THE SECOND C-KIT DNA QUADRUPLEX CRYSTAL STRUCTURE Descriptor: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3'), POTASSIUM ION Authors: Wei, D, Neidle, S. Deposit date: 2014-10-15 Release date: 2014-10-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.73 Å) Cite: THE SECOND C-KIT1 DNA QUADRUPLEX CRYSTAL STRUCTURE TO BE PUBLISHED
4KZD	Crystal structure of an RNA aptamer in complex with fluorophore and Fab Descriptor: 4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol, BL3-6 Fab antibody, heavy chain, ... Authors: Huang, H, Suslov, N.B, Li, N, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. Deposit date: 2013-05-29 Release date: 2014-06-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.186 Å) Cite: A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
4KZE	Crystal structure of an RNA aptamer in complex with Fab Descriptor: BL3-6 Fab antibody, heavy chain, light chain, ... Authors: Huang, H, Suslov, N.B, Li, N, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. Deposit date: 2013-05-29 Release date: 2014-06-18 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.404 Å) Cite: A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
5VHA	DHX36 with an N-terminal truncation Descriptor: DEAH (Asp-Glu-Ala-His) box polypeptide 36 Authors: Chen, M, Ferre-D'Amare, A. Deposit date: 2017-04-12 Release date: 2018-06-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.227 Å) Cite: Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018
5VHD	DHX36 with an N-terminal truncation bound to ADP-AlF4 Descriptor: ADENOSINE-5'-DIPHOSPHATE, DEAH (Asp-Glu-Ala-His) box polypeptide 36, TETRAFLUOROALUMINATE ION Authors: Chen, M, Ferre-D'Amare, A. Deposit date: 2017-04-13 Release date: 2018-06-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018
5VHC	DHX36 with an N-terminal truncation bound to ADP-BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DEAH (Asp-Glu-Ala-His) box polypeptide 36, ... Authors: Chen, M, Ferre-D'Amare, A. Deposit date: 2017-04-12 Release date: 2018-06-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018
2A5P	Monomeric parallel-stranded DNA tetraplex with snap-back 3+1 3' G-tetrad, single-residue chain reversal loops, GAG triad in the context of GAAG diagonal loop, NMR, 8 struct. Descriptor: 5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*IP*GP*AP*GP*GP*GP*TP*GP*GP*GP*GP*AP*AP*GP*G)-3' Authors: Phan, A.T, Kuryavyi, V.V, Gaw, H.Y, Patel, D.J. Deposit date: 2005-06-30 Release date: 2005-07-26 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat.Chem.Biol., 1, 2005
2A5R	Complex of tetra-(4-n-methylpyridyl) porphin with monomeric parallel-stranded DNA tetraplex, snap-back 3+1 3' G-tetrad, single-residue chain reversal loops, GAG triad in the context of GAAG diagonal loop, C-MYC promoter, NMR, 6 struct. Descriptor: (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin, 5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*IP*GP*AP*GP*GP*GP*TP*GP*GP*GP*GP*AP*AP*GP*G)-3' Authors: Phan, A.T, Kuryavyi, V.V, Gaw, H.Y, Patel, D.J. Deposit date: 2005-06-30 Release date: 2005-07-26 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat.Chem.Biol., 1, 2005
4WO2	CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA Descriptor: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3'), POTASSIUM ION Authors: wei, D, parkinson, g.n, neidle, s. Deposit date: 2014-10-15 Release date: 2014-10-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.82 Å) Cite: CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT-1 PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA TO BE PUBLISHED
1X0F	Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA Descriptor: 5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0 Authors: Enokizono, Y, Konishi, Y, Nagata, K, Ouhashi, K, Uesugi, S, Ishikawa, F, Katahira, M. Deposit date: 2005-03-22 Release date: 2005-04-05 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D. J.Biol.Chem., 280, 2005
4KI2	Crystallographic analysis of an RNA-polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA Descriptor: DNA (5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3'), POTASSIUM ION, RNA polymerase sigma factor Authors: Feklistov, A, Darst, S.A. Deposit date: 2013-05-01 Release date: 2013-09-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Crystallographic analysis of an RNA polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA: quadruplex formation as a possible tool for engineering crystal contacts in protein-ssDNA complexes. Acta Crystallogr.,Sect.F, 69, 2013
1LVS	THE SOLUTION STRUCTURE OF D(G4T4G3)2 Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3' Authors: Crnugelj, M, Hud, N.V, Plavec, J. Deposit date: 2002-05-29 Release date: 2002-07-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold. J.Mol.Biol., 320, 2002
6H5R	Structure of the complex of a human telomeric DNA with bis(1-butyl-3-methyl-imidazole-2-ylidene) gold(I) Descriptor: Human Telomeric DNA, POTASSIUM ION, STRONTIUM ION, ... Authors: Bazzicalupi, C, Gratteri, P, Papi, F. Deposit date: 2018-07-25 Release date: 2019-01-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: Interaction of a gold(i) dicarbene anticancer drug with human telomeric DNA G-quadruplex: solution and computationally aided X-ray diffraction analysis. Dalton Trans, 47, 2018
1JRN	Orthorhombic form of Oxytricha telomeric DNA at 2.0A Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G, Neidle, S. Deposit date: 2001-08-14 Release date: 2002-06-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J.Mol.Biol., 320, 2002
1JPQ	Crystal Structure of the Oxytricha Telomeric DNA at 1.6A Descriptor: 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G, Neidle, S. Deposit date: 2001-08-03 Release date: 2002-06-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J.Mol.Biol., 320, 2002
5CCW	Structure of the complex of a human telomeric DNA with Au(caffein-2-ylidene)2 Descriptor: Au(caffein-2-ylidene)2, POTASSIUM ION, human telomeric DNA Authors: Ferraroni, M, Bazzicalupi, C, Gratteri, P, Messori, L, Papi, F. Deposit date: 2015-07-02 Release date: 2016-03-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Determinants for Tight and Selective Binding of a Medicinal Dicarbene Gold(I) Complex to a Telomeric DNA G-Quadruplex: a Joint ESI MS and XRD Investigation. Angew.Chem.Int.Ed.Engl., 55, 2016
6TZS	A DNA i-motif/duplex hybrid Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*CP*TP*GP*(CBR)P*AP*A)-3') Authors: Chu, B, Paukstelis, P.J. Deposit date: 2019-08-13 Release date: 2019-10-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
2WCT	human SARS coronavirus unique domain (triclinic form) Descriptor: NON-STRUCTURAL PROTEIN 3 Authors: Tan, J, Vonrhein, C, Smart, O.S, Bricogne, G, Bollati, M, Hansen, G, Mesters, J.R, Hilgenfeld, R. Deposit date: 2009-03-16 Release date: 2009-05-26 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.79 Å) Cite: The Sars-Unique Domain (Sud) of Sars Coronavirus Contains Two Macrodomains that Bind G-Quadruplexes. Plos Pathog., 5, 2009
1WTB	Complex structure of the C-terminal RNA-binding domain of hnRNP D (AUF1) with telomere DNA Descriptor: 5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0 Authors: Enokizono, Y, Konishi, Y, Nagata, K, Ouhashi, K, Uesugi, S, Ishikawa, F, Katahira, M. Deposit date: 2004-11-22 Release date: 2005-04-05 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D J.Biol.Chem., 280, 2005
7Q48	Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8U17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto onco-gene Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*AP*UP*UP*GP*GP*GP*UP*GP*GP*GP*AP*UP*CP*UP*GP*GP*G)-3') Authors: Wang, Z, Jurt, S, Dominguez-Martin, A, Johannsen, S, Sigel, R.K.O. Deposit date: 2021-10-29 Release date: 2022-11-16 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8U17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto onco-gene To Be Published
7QA2	Solution structure of an intramolecular RNA G-quadruplex formed by the 6A mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto-oncogene Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*AP*UP*GP*GP*GP*GP*UP*GP*GP*GP*AP*GP*CP*UP*GP*GP*G)-3') Authors: Wang, Z, Falk, T, Jurt, S, Johannsen, S, Sigel, R.K.O. Deposit date: 2021-11-15 Release date: 2022-11-23 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Solution structure of an intramolecular RNA G-quadruplex formed by the 6A mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto-oncogene To Be Published
7Q6L	Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8A17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto-oncogene Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*AP*UP*AP*GP*GP*GP*UP*GP*GP*GP*AP*UP*CP*UP*GP*GP*G)-3') Authors: Wang, Z, Jurt, S, Dominguez-Martin, A, Johannsen, S, Sigel, R.K.O. Deposit date: 2021-11-08 Release date: 2022-11-16 Last modified: 2024-01-31 Method: SOLUTION NMR Cite: Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8A17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto-oncogene To Be Published

<78910111213141516171819202122>