PDB: 45118 resultsInfo pagesStatus searchChemie searchBIRD

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6P4E	Leishmania mexicana CPB in complex with an aza-nitrile inhibitor Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-tert-butyl-N-[(2S)-1-(2-cyano-1,2-dimethylhydrazinyl)-4-methyl-1-oxopentan-2-yl]-1-methyl-1H-pyrazole-5-carboxamide (non-preferred name), ... Authors: Ribeiro, J.F.R, Li, C, De Vita, D, Emsley, J, Montanari, C.A. Deposit date: 2019-05-27 Release date: 2020-06-03 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.35 Å) Cite: High Resolution X-Ray Crystal Structures of LmCPB2.8 Co-Crystalized with Dipeptidyl Aza-nitrile Inhibitor and Structure Activity Relationships To Be Published
6P1T	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound CMPCPP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6MC0	Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila with Bound Substrate Ribose-5-Phosphate and Product Ribulose-5-Phosphate Descriptor: RIBOSE-5-PHOSPHATE, RIBULOSE-5-PHOSPHATE, Ribose-5-phosphate isomerase A, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-08-30 Release date: 2018-09-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila with Bound Substrate Ribose-5-Phosphate and Product Ribulose-5-Phosphate to be published
6OZE	Crystal structure of the catalytic domain of human Endonuclease V (C140S/C225S/C226A/C228S) Descriptor: ACETATE ION, Endonuclease V, GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2019-05-15 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
6OZS	Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 90 min soak in 10 mM Mg2+ Descriptor: 1,2-ETHANEDIOL, DNA/RNA (5'-R(*CP*GP*GP*UP*AP*AP*CP*CP*C)-D(P*I)-R(P*A)-3'), Endonuclease V, ... Authors: Samara, N.L, Yang, W. Deposit date: 2019-05-15 Release date: 2019-09-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
4XGV	Crystal structure of Escherichia coli Flavin trafficking protein, an FMN transferase Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... Authors: Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V. Deposit date: 2015-01-02 Release date: 2015-12-16 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.883 Å) Cite: Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm. Microbiologyopen, 5, 2016
2IHM	Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide Descriptor: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', ... Authors: Moon, A.F, Pedersen, L.C, Kunkel, T.A. Deposit date: 2006-09-26 Release date: 2006-12-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural insight into the substrate specificity of DNA Polymerase mu. Nat.Struct.Mol.Biol., 14, 2007
6ESQ	Structure of the acetoacetyl-CoA thiolase/HMG-CoA synthase complex from Methanothermococcus thermolithotrophicus soaked with acetyl-CoA Descriptor: CHLORIDE ION, COENZYME A, HydroxyMethylGlutaryl-CoA synthase, ... Authors: Voegeli, B, Engilberge, S, Girard, E, Riobe, F, Maury, O, Erb, J.T, Shima, S, Wagner, T. Deposit date: 2017-10-24 Release date: 2018-03-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4XB2	Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH Descriptor: 319aa long hypothetical homoserine dehydrogenase, L-HOMOSERINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... Authors: Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. Deposit date: 2014-12-16 Release date: 2015-07-15 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases. Sci Rep, 5, 2015
6EUU	The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (KSK29) Descriptor: (3~{R})-8-cyclopropyl-5-oxidanylidene-7-(quinolin-3-ylmethyl)-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid, ISOPROPYL ALCOHOL, Listeriolysin positive regulatory factor A, ... Authors: Begum, A, Hall, M, Grundstrom, C, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E. Deposit date: 2017-10-31 Release date: 2018-05-02 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes. J. Med. Chem., 61, 2018
6M0F	X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) in substrate-free form Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, Antibody fragment (9D5) Light chain, Antibody fragment (9D5) heavy chain, ... Authors: Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A. Deposit date: 2020-02-21 Release date: 2021-02-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters. Nat Commun, 12, 2021
4XDT	Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, a bifunctional FMN transferase/FAD pyrophosphatase, N55Y mutant, FAD bound form Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FAD:protein FMN transferase, ... Authors: Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V. Deposit date: 2014-12-19 Release date: 2015-10-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.452 Å) Cite: Evidence for Posttranslational Protein Flavinylation in the Syphilis Spirochete Treponema pallidum: Structural and Biochemical Insights from the Catalytic Core of a Periplasmic Flavin-Trafficking Protein. Mbio, 6, 2015
3IQE	Structure of F420 dependent methylene-tetrahydromethanopterin dehydrogenase in complex with methylene-tetrahydromethanopterin and coenzyme F420 Descriptor: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN, CALCIUM ION, COENZYME F420, ... Authors: Ceh, K.E, Demmer, U, Warkentin, E, Moll, J, Thauer, R.K, Shima, S, Ermler, U. Deposit date: 2009-08-20 Release date: 2009-10-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of the hydride transfer mechanism in F(420)-dependent methylenetetrahydromethanopterin dehydrogenase Biochemistry, 48, 2009
6M3Z	X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in milnacipran bound form Descriptor: (1R,2S)-2-(aminomethyl)-N,N-diethyl-1-phenyl-cyclopropane-1-carboxamide, Antibody fragment 9D5 Light chain, Antibody fragment 9D5 heavy chain, ... Authors: Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A. Deposit date: 2020-03-04 Release date: 2021-02-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters. Nat Commun, 12, 2021
6EZI	PDZK1 domain 4 in complex with C-terminal peptide of human PepT2. Descriptor: GLYCEROL, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, Solute carrier family 15 member 2 Authors: Loew, C, Flayhan, A, Pieprzyk, J. Deposit date: 2017-11-15 Release date: 2018-09-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.503321 Å) Cite: Probing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution. Structure, 26, 2018
6M47	X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in tramadol bound form Descriptor: (1S,2S)-2-[(dimethylamino)methyl]-1-(3-methoxyphenyl)cyclohexan-1-ol, Antibody fragment 9D5 light chain, Antibody fragment Heavy chain, ... Authors: Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A. Deposit date: 2020-03-05 Release date: 2021-02-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.252 Å) Cite: Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters. Nat Commun, 12, 2021
6F5V	Crystal structure of the prephenate aminotransferase from Arabidopsis thaliana Descriptor: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase, CITRIC ACID, PYRIDOXAL-5'-PHOSPHATE, ... Authors: Cobessi, D, Robin, A, Giustini, C, Graindorge, M, Matringe, M. Deposit date: 2017-12-03 Release date: 2019-03-13 Last modified: 2019-06-12 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Tyrosine metabolism: identification of a key residue in the acquisition of prephenate aminotransferase activity by 1 beta aspartate aminotransferase. Febs J., 286, 2019
4XB1	Hyperthermophilic archaeal homoserine dehydrogenase in complex with NADPH Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... Authors: Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. Deposit date: 2014-12-16 Release date: 2015-07-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases. Sci Rep, 5, 2015
6F9M	The LIPY/F-motif in an intracellular subtilisin protease is involved in inhibition Descriptor: ACETATE ION, SODIUM ION, Serine protease, ... Authors: Bjerga, G.E.K, Larsen, O, Arsin, H, Williamson, A.K, Garcia-Moyano, A, Leiros, I, Puntervoll, P. Deposit date: 2017-12-14 Release date: 2018-06-27 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.298 Å) Cite: Mutational analysis of the pro-peptide of a marine intracellular subtilisin protease supports its role in inhibition. Proteins, 86, 2018
6P1S	Post-catalytic nicked complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and newly incorporated AMP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. Deposit date: 2019-05-20 Release date: 2019-09-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
2JLM	Structure of a Putative Acetyltransferase (ACIAD1637) from Acinetobacter baylyi ADP1 Descriptor: ACETATE ION, AZIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Davies, A.M, Tata, R, Snape, A, Sutton, B.J, Brown, P.R. Deposit date: 2008-09-10 Release date: 2009-01-20 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure and Substrate Specificity of Acetyltransferase Aciad1637 from Acinetobacter Baylyi Adp1. Biochimie, 91, 2009
4XEA	Crystal structure of putative M16-like peptidase from Alicyclobacillus acidocaldarius Descriptor: ACETATE ION, GLYCEROL, NICKEL (II) ION, ... Authors: Michalska, K, Tesar, C, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2014-12-23 Release date: 2015-03-18 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of putative M16-like peptidase from Alicyclobacillus acidocaldarius To Be Published
2JHJ	3-methyladenine dna-glycosylase from Archaeoglobus fulgidus Descriptor: 3-METHYLADENINE DNA-GLYCOSYLASE, GLYCEROL, SODIUM ION Authors: Leiros, I, Nabong, M.P, Grosvik, K, Ringvoll, J, Haugland, G.T, Uldal, L, Reite, K, Olsbu, I.K, Knaevelsrud, I, Moe, E, Andersen, O.A, Birkeland, N.K, Ruoff, P, Klungland, A, Bjelland, S. Deposit date: 2007-02-22 Release date: 2007-04-10 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Basis for Enzymatic Excision of N1-Methyladenine and N3-Methylcytosine from DNA Embo J., 26, 2007
3IGR	The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A Descriptor: GLYCEROL, Ribosomal-protein-S5-alanine N-acetyltransferase, SODIUM ION Authors: Stein, A.J, Sather, A, Shackelford, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2009-07-28 Release date: 2009-09-01 Last modified: 2017-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A To be Published
6EYP	X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A Descriptor: GLYCEROL, MAGNESIUM ION, SODIUM ION, ... Authors: Prokofev, I.I, Balaev, V.V, Gabdoulkhakov, A.G, Betzel, C, Lashkov, A.A. Deposit date: 2017-11-13 Release date: 2018-11-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.22 Å) Cite: X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A To Be Published

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