Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6PDL
DownloadVisualize
BU of 6pdl by Molmil
Crystal Structure of Hendra Virus Attachment G Glycoprotein in Complex with Receptor Ephrin-B2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Attachment glycoprotein, ...
Authors:Xu, K, Nikolov, D.B.
Deposit date:2019-06-19
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:New insights into the Hendra virus attachment and entry process from structures of the virus G glycoprotein and its complex with Ephrin-B2.
PLoS ONE, 7, 2012
5KCX
DownloadVisualize
BU of 5kcx by Molmil
Pim-1 kinase in Complex with a Selective N-substituted 7-azaindole Inhibitor
Descriptor: 4-chloranyl-1-methyl-2-[4-(4-methylpiperazin-1-yl)phenyl]pyrrolo[2,3-b]pyridine-6-carboxamide, ACETATE ION, IMIDAZOLE, ...
Authors:Mechin, I, McLean, L.R, Zhang, Y, Wang, R.
Deposit date:2016-06-07
Release date:2017-07-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of N-substituted 7-azaindoles as PIM1 kinase inhibitors - Part I.
Bioorg. Med. Chem. Lett., 27, 2017
5K09
DownloadVisualize
BU of 5k09 by Molmil
Crystal Structure of COMT in complex with a thiazole ligand
Descriptor: 5-{3-[(4-methoxyphenyl)methyl]-1H-pyrazol-5-yl}-2,4-dimethyl-1,3-thiazole, Catechol O-methyltransferase, PHOSPHATE ION, ...
Authors:Ehler, A, Rodriguez-Sarmiento, R.M, Rudolph, M.G.
Deposit date:2016-05-17
Release date:2016-09-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Design of Potent and Druglike Nonphenolic Inhibitors for Catechol O-Methyltransferase Derived from a Fragment Screening Approach Targeting the S-Adenosyl-l-methionine Pocket.
J. Med. Chem., 59, 2016
6YLH
DownloadVisualize
BU of 6ylh by Molmil
Rix1-Rea1 pre-60S particle - full composite structure
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
6EWN
DownloadVisualize
BU of 6ewn by Molmil
HspA from Thermosynechococcus vulcanus in the presence of 2M urea with initial stages of denaturation
Descriptor: HspA, UREA
Authors:Adir, N, Ghosh, S, Salama, F, Dines, M.
Deposit date:2017-11-06
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Biophysical and structural characterization of the small heat shock protein HspA from Thermosynechococcus vulcanus in 2 M urea.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
6POZ
DownloadVisualize
BU of 6poz by Molmil
Structure of human endothelial nitric oxide synthase heme domain in complex with 7-(3-(Aminomethyl)-4-isopropoxyphenyl)-4-methylquinolin-2-amine
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5,6,7,8-TETRAHYDROBIOPTERIN, 7-{3-(aminomethyl)-4-[(propan-2-yl)oxy]phenyl}-4-methylquinolin-2-amine, ...
Authors:Chreifi, G, Li, H, Poulos, T.L.
Deposit date:2019-07-05
Release date:2020-04-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:First Contact: 7-Phenyl-2-Aminoquinolines, Potent and Selective Neuronal Nitric Oxide Synthase Inhibitors That Target an Isoform-Specific Aspartate.
J.Med.Chem., 63, 2020
8W52
DownloadVisualize
BU of 8w52 by Molmil
p17 protein structure of HIV2 when OLA1 existing
Descriptor: Gag polyprotein, SULFATE ION
Authors:Dang, L.L.
Deposit date:2023-08-25
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:p17 protein structure of HIV2 when OLA1 existing
To Be Published
6B4O
DownloadVisualize
BU of 6b4o by Molmil
1.73 Angstrom Resolution Crystal Structure of Glutathione Reductase from Enterococcus faecalis in Complex with FAD
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Glutathione reductase, ...
Authors:Minasov, G, Warwzak, Z, Shuvalova, L, Dubrovska, I, Cardona-Correa, A, Grimshaw, S, Kwon, K, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-09-27
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:1.73 Angstrom Resolution Crystal Structure of Glutathione Reductase from Enterococcus faecalis in Complex with FAD.
To Be Published
6Y64
DownloadVisualize
BU of 6y64 by Molmil
Structure of Sheep Polyomavirus VP1 in complex with 6'-Sialyllactosamine
Descriptor: 1,2-ETHANEDIOL, Capsid protein VP1, GLYCEROL, ...
Authors:Stroh, L.J, Rustmeier, N.H, Stehle, T.
Deposit date:2020-02-26
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family.
Mbio, 11, 2020
5OPO
DownloadVisualize
BU of 5opo by Molmil
Crystal structure of R238G cN-II mutant
Descriptor: Cytosolic purine 5'-nucleotidase, GLYCEROL, MAGNESIUM ION
Authors:Hnizda, A, Pachl, P, Rezacova, P.
Deposit date:2017-08-10
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation.
Leukemia, 32, 2018
5OQI
DownloadVisualize
BU of 5oqi by Molmil
Crystal Structure of a disulfide trapped single chain trimer composed of the MHC I heavy chain H-2Kb Y84C E63A mutant, beta-2microglobulin, and ovalbumin-derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M, Beton, M.E.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
6Y9E
DownloadVisualize
BU of 6y9e by Molmil
Crystal structure of putative ancestral haloalkane dehalogenase AncHLD2 (node 2)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Chaloupkova, R, Damborsky, J, Marek, M.
Deposit date:2020-03-09
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of hyperstable ancestral haloalkane dehalogenases show restricted conformational dynamics.
Comput Struct Biotechnol J, 18, 2020
6EZJ
DownloadVisualize
BU of 6ezj by Molmil
Imidazoleglycerol-phosphate dehydratase
Descriptor: Imidazoleglycerol-phosphate dehydratase 2, chloroplastic, MANGANESE (II) ION, ...
Authors:Rawson, S, Bisson, C, Hurdiss, D.L, Muench, S.P.
Deposit date:2017-11-15
Release date:2018-02-07
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Elucidating the structural basis for differing enzyme inhibitor potency by cryo-EM.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6Y63
DownloadVisualize
BU of 6y63 by Molmil
Structure of Sheep Polyomavirus VP1 in complex with 3'-Sialyllactosamine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Capsid protein VP1, MAGNESIUM ION, ...
Authors:Stroh, L.J, Rustmeier, N.H, Stehle, T.
Deposit date:2020-02-26
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family.
Mbio, 11, 2020
6YEZ
DownloadVisualize
BU of 6yez by Molmil
Plant PSI-ferredoxin-plastocyanin supercomplex
Descriptor: (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Caspy, I, Nelson, N, Shkolnisky, Y, Klaiman, D, Sheinker, A.
Deposit date:2020-03-25
Release date:2020-09-30
Last modified:2021-07-07
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:The structure of a triple complex of plant photosystem I with ferredoxin and plastocyanin.
Nat.Plants, 6, 2020
6YFJ
DownloadVisualize
BU of 6yfj by Molmil
Virus-like particle of bacteriophage ESE001
Descriptor: coat protein
Authors:Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K.
Deposit date:2020-03-26
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.233 Å)
Cite:Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.
Sci Adv, 6, 2020
6PEM
DownloadVisualize
BU of 6pem by Molmil
Focussed refinement of InvGN0N1:SpaPQR:PrgHK from Salmonella SPI-1 injectisome NC-base
Descriptor: Lipoprotein PrgK, Protein InvG, Protein PrgH, ...
Authors:Hu, J, Worrall, L.J, Strynadka, N.C.J.
Deposit date:2019-06-20
Release date:2019-10-23
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:T3S injectisome needle complex structures in four distinct states reveal the basis of membrane coupling and assembly.
Nat Microbiol, 4, 2019
6BDF
DownloadVisualize
BU of 6bdf by Molmil
2.8 A resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy
Descriptor: Proteasome subunit alpha, Proteasome subunit beta
Authors:Campbell, M.G, Veesler, D, Cheng, A, Potter, C.S, Carragher, B.
Deposit date:2017-10-23
Release date:2017-12-27
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:2.8 angstrom resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy.
Elife, 4, 2015
6YFP
DownloadVisualize
BU of 6yfp by Molmil
Virus-like particle of bacteriophage GQ-112
Descriptor: coat protein
Authors:Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K.
Deposit date:2020-03-26
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.
Sci Adv, 6, 2020
6PGK
DownloadVisualize
BU of 6pgk by Molmil
Membrane Protein Megahertz Crystallography at the European XFEL, Photosystem I XFEL at 2.9 A
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Fromme, R, Gisriel, C, Fromme, P.
Deposit date:2019-06-24
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Membrane protein megahertz crystallography at the European XFEL.
Nat Commun, 10, 2019
8WAS
DownloadVisualize
BU of 8was by Molmil
Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positioned 9nt downstream of TSS.
Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ...
Authors:Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y.
Deposit date:2023-09-08
Release date:2023-12-06
Last modified:2024-01-03
Method:ELECTRON MICROSCOPY (6.13 Å)
Cite:Structural visualization of transcription initiation in action.
Science, 382, 2023
5OQP
DownloadVisualize
BU of 5oqp by Molmil
Crystal structure of the S. cerevisiae condensin Ycg1-Brn1 subcomplex bound to DNA (crystal form I)
Descriptor: Condensin complex subunit 2, Condensin complex subunit 3, DNA (5'-D(*GP*AP*TP*GP*TP*GP*TP*AP*GP*CP*TP*AP*CP*AP*CP*AP*TP*C)-3'), ...
Authors:Kschonsak, M, Hassler, M, Haering, C.H.
Deposit date:2017-08-14
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes.
Cell, 171, 2017
6EXN
DownloadVisualize
BU of 6exn by Molmil
Post-catalytic P complex spliceosome with 3' splice site docked
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Intron lariat: UBC4 RNA, ...
Authors:Wilkinson, M.E, Fica, S.M, Galej, W.P, Norman, C.M, Newman, A.J, Nagai, K.
Deposit date:2017-11-08
Release date:2018-01-17
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Postcatalytic spliceosome structure reveals mechanism of 3'-splice site selection.
Science, 358, 2017
6YF7
DownloadVisualize
BU of 6yf7 by Molmil
Virus-like particle of bacteriophage AC
Descriptor: Coat protein
Authors:Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K.
Deposit date:2020-03-26
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.
Sci Adv, 6, 2020
8WAP
DownloadVisualize
BU of 8wap by Molmil
Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positioned 6nt downstream of TSS.
Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ...
Authors:Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y.
Deposit date:2023-09-08
Release date:2023-12-06
Last modified:2024-01-03
Method:ELECTRON MICROSCOPY (5.85 Å)
Cite:Structural visualization of transcription initiation in action.
Science, 382, 2023

224201

건을2024-08-28부터공개중

PDB statisticsPDBj update infoContact PDBjnumon