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2HFP
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Crystal Structure of PPAR Gamma with N-sulfonyl-2-indole carboxamide ligands
Descriptor: 3-(4-METHOXYPHENYL)-N-(PHENYLSULFONYL)-1-[3-(TRIFLUOROMETHYL)BENZYL]-1H-INDOLE-2-CARBOXAMIDE, Peroxisome proliferator-activated receptor gamma, SRC Peptide Fragment
Authors:Pokross, M.E, Evdokimov, A.G, Walter, R.L, Mekel, M.J, Hopkins, C.R.
Deposit date:2006-06-25
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and synthesis of novel N-sulfonyl-2-indole carboxamides as potent PPAR-gamma binding agents with potential application to the treatment of osteoporosis.
Bioorg.Med.Chem.Lett., 16, 2006
2ANW
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BU of 2anw by Molmil
Expression, crystallization and three-dimensional structure of the catalytic domain of human plasma kallikrein: Implications for structure-based design of protease inhibitors
Descriptor: BENZAMIDINE, plasma kallikrein, light chain
Authors:Tang, J, Yu, C.L, Williams, S.R, Springman, E, Jeffery, D, Sprengeler, P.A, Estevez, A, Sampang, J, Shrader, W, Spencer, J.R, Young, W.B, McGrath, M.E, Katz, B.A.
Deposit date:2005-08-11
Release date:2005-10-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Expression, crystallization, and three-dimensional structure of the catalytic domain of human plasma kallikrein.
J.Biol.Chem., 280, 2005
3NOX
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BU of 3nox by Molmil
Crystal structure of human DPP-IV in complex with Sa-(+)-(6-(aminomethyl)-5-(2,4-dichlorophenyl)-7-methylimidazo[1,2-a]pyrimidin-2-yl)(morpholino)methanone
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl-peptidase 4 (CD26, ...
Authors:Klei, H.E.
Deposit date:2010-06-25
Release date:2010-08-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.338 Å)
Cite:Discovery of 6-(Aminomethyl)-5-(2,4-dichlorophenyl)-7-methylimidazo[1,2-a]pyrimidine-2-carboxamides as Potent, Selective Dipeptidyl Peptidase-4 (DPP4) Inhibitors.
J.Med.Chem., 53, 2010
3JWO
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BU of 3jwo by Molmil
Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FAB 48D Heavy CHAIN, FAB 48D LIGHT CHAIN, ...
Authors:Pancera, M, Majeed, S, Huang, C.C, Kwon, Y.D, Zhou, T, Robinson, J.E, Sodroski, J, Wyatt, R, Kwong, P.D.
Deposit date:2009-09-18
Release date:2009-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility.
Proc.Natl.Acad.Sci.USA, 107, 2010
5F62
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BU of 5f62 by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with MA4-022-2
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N}-[2-chloranyl-5-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-pyrimidin-4-yl]amino]phenyl]-2-methyl-propane-2-sulfonamide
Authors:Ember, S.W, Zhu, J.-Y, Schonbrunn, E.
Deposit date:2015-12-04
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Potent Dual BET Bromodomain-Kinase Inhibitors as Value-Added Multitargeted Chemical Probes and Cancer Therapeutics.
Mol. Cancer Ther., 16, 2017
2WY7
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BU of 2wy7 by Molmil
Staphylococcus aureus complement subversion protein Sbi-IV in complex with complement fragment C3d revealing an alternative binding mode
Descriptor: COMPLEMENT C3D FRAGMENT, GLYCEROL, IGG-BINDING PROTEIN
Authors:Clark, E.A, Crennell, S, Upadhyay, A, Mackay, J.D, Bagby, S, van den Elsen, J.M.
Deposit date:2009-11-13
Release date:2010-12-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Structural Basis for Staphylococcal Complement Subversion: X-Ray Structure of the Complement- Binding Domain of Staphylococcus Aureus Protein Sbi in Complex with Ligand C3D.
Mol.Immunol., 48, 2011
1K51
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BU of 1k51 by Molmil
A G55A Mutation Induces 3D Domain Swapping in the B1 Domain of Protein L from Peptostreptococcus magnus
Descriptor: Protein L, ZINC ION
Authors:O'Neill, J.W, Kim, D.E, Johnsen, K, Baker, D, Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001
3ENM
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BU of 3enm by Molmil
The structure of the MAP2K MEK6 reveals an autoinhibitory dimer
Descriptor: 1,2-ETHANEDIOL, Dual specificity mitogen-activated protein kinase kinase 6, GLYCEROL, ...
Authors:Min, X, Akella, R, He, H, Humphreys, J.M, Tsutakawa, S, Lee, S.-J, Tainer, J.A, Cobb, M.H, Goldsmith, E.J.
Deposit date:2008-09-25
Release date:2009-03-03
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The structure of the MAP2K MEK6 reveals an autoinhibitory dimer
Structure, 17, 2009
2HNU
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BU of 2hnu by Molmil
Crystal Structure of a Dipeptide Complex of Bovine Neurophysin-I
Descriptor: Oxytocin-neurophysin 1, PHENYLALANINE, TYROSINE
Authors:Li, X, Lee, H, Wu, J, Breslow, E.
Deposit date:2006-07-13
Release date:2007-04-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Contributions of the interdomain loop, amino terminus, and subunit interface to the ligand-facilitated dimerization of neurophysin: crystal structures and mutation studies of bovine neurophysin-I.
Protein Sci., 16, 2007
3NTA
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BU of 3nta by Molmil
Structure of the Shewanella loihica PV-4 NADH-dependent persulfide reductase
Descriptor: CHLORIDE ION, COENZYME A, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, ...
Authors:Sazinsky, M.H, Crane, E.J, Warner, M.D, Lukose, V, Lee, K.H.
Deposit date:2010-07-03
Release date:2010-12-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Characterization of an NADH-Dependent Persulfide Reductase from Shewanella loihica PV-4: Implications for the Mechanism of Sulfur Respiration via FAD-Dependent Enzymes .
Biochemistry, 50, 2010
3O4P
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BU of 3o4p by Molmil
DFPase at 0.85 Angstrom resolution (H atoms included)
Descriptor: 1,2-DIMETHOXYETHANE, 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE, ...
Authors:Liebschner, D, Elias, M, Koepke, J, Lecomte, C, Guillot, B, Jelsch, C, Chabriere, E.
Deposit date:2010-07-27
Release date:2011-08-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase.
BMC Res Notes, 6, 2013
4K0O
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BU of 4k0o by Molmil
F17b-G lectin domain with bound GlcNAc(beta1-3)Gal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-methyl beta-D-galactopyranoside, F17b-G fimbrial adhesin, NICKEL (II) ION, ...
Authors:Buts, L, Loris, R, Bouckaert, J, Moonens, K.
Deposit date:2013-04-04
Release date:2013-04-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli
Biology (Basel), 2, 2013
2X03
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BU of 2x03 by Molmil
The X-ray structure of the Streptomyces coelicolor A3 Chondroitin AC Lyase Y253A mutant
Descriptor: MAGNESIUM ION, PUTATIVE SECRETED LYASE
Authors:Elmabrouk, Z.H, Taylor, E.J, Vincent, F, Smith, N.L, Turkenburg, J.P, Davies, G.J, Black, G.W.
Deposit date:2009-12-04
Release date:2010-08-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of a Family 8 Polysaccharide Lyase Reveal Open and Highly Occluded Substrate-Binding Cleft Conformations.
Proteins, 79, 2011
2HJS
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BU of 2hjs by Molmil
The structure of a probable aspartate-semialdehyde dehydrogenase from Pseudomonas aeruginosa
Descriptor: 1,4-DIETHYLENE DIOXIDE, USG-1 protein homolog
Authors:Cuff, M.E, Evdokimova, E, Kudritska, M, Edwards, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-06-30
Release date:2006-08-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of a probable aspartate-semialdehyde dehydrogenase from Pseudomonas aeruginosa
To be published
1BND
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BU of 1bnd by Molmil
STRUCTURE OF THE BRAIN-DERIVED NEUROTROPHIC FACTOR(SLASH)NEUROTROPHIN 3 HETERODIMER
Descriptor: BRAIN DERIVED NEUROTROPHIC FACTOR, ISOPROPYL ALCOHOL, NEUROTROPHIN 3
Authors:Robinson, R.C, Radziejewski, C, Stuart, D.I, Jones, E.Y.
Deposit date:1994-12-12
Release date:1996-04-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the brain-derived neurotrophic factor/neurotrophin 3 heterodimer.
Biochemistry, 34, 1995
3EP5
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BU of 3ep5 by Molmil
Human AdoMetDC E178Q mutant with no putrescine bound
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PYRUVIC ACID, S-adenosylmethionine decarboxylase alpha chain, ...
Authors:Bale, S, Lopez, M.M, Makhatadze, G.I, Fang, Q, Pegg, A.E, Ealick, S.E.
Deposit date:2008-09-29
Release date:2008-12-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase.
Biochemistry, 47, 2008
1BNL
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BU of 1bnl by Molmil
ZINC DEPENDENT DIMERS OBSERVED IN CRYSTALS OF HUMAN ENDOSTATIN
Descriptor: COLLAGEN XVIII, ZINC ION
Authors:Ding, Y.-H, Javaherian, K, Lo, K.-M, Chopra, R, Boehm, T, Lanciotti, J, Harris, B.A, Li, Y, Shapiro, R, Hohenester, E, Timpl, R, Folkman, J, Wiley, D.C.
Deposit date:1998-07-30
Release date:1998-10-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Zinc-dependent dimers observed in crystals of human endostatin.
Proc.Natl.Acad.Sci.USA, 95, 1998
2QLT
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BU of 2qlt by Molmil
Crystal structure of an isoform of DL-glycerol-3-phosphatase, Rhr2p, from Saccharomyces cerevisiae
Descriptor: (DL)-glycerol-3-phosphatase 1, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Tan, K, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-07-13
Release date:2007-08-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of an isoform of DL-glycerol-3-phosphatase, Rhr2p from Saccharomyces cerevisiae.
To be Published
3K1Z
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BU of 3k1z by Molmil
Crystal Structure of Human Haloacid Dehalogenase-like Hydrolase Domain containing 3 (HDHD3)
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Haloacid dehalogenase-like hydrolase domain-containing protein 3
Authors:Ugochukwu, E, Guo, K, Yue, W.W, Pilka, E, Picaud, S, Muniz, J, Pike, A.C.W, Krojer, T, Gomes, M, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Kavanagh, K, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2009-09-29
Release date:2009-11-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Human Haloacid Dehalogenase-like Hydrolase Domain containing 3 (HDHD3)
To be Published
2OLK
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BU of 2olk by Molmil
ABC Protein ArtP in complex with ADP-beta-S
Descriptor: 5'-O-[(R)-HYDROXY(THIOPHOSPHONOOXY)PHOSPHORYL]ADENOSINE, Amino acid ABC transporter
Authors:Thaben, P.F, Eckey, V, Scheffel, F, Saenger, W, Schneider, E, Vahedi-Faridi, A.
Deposit date:2007-01-19
Release date:2008-01-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the ATP-binding cassette (ABC) protein ArtP from Geobacillus stearothermophilus reveal a stable dimer in the post hydrolysis state and an asymmetry in the dimerization region
To be Published
1K4E
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BU of 1k4e by Molmil
CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASES OXA-10 DETERMINED BY MAD PHASING WITH SELENOMETHIONINE
Descriptor: Beta-lactamase PSE-2, SULFATE ION
Authors:Kerff, F, Fonze, E, Bouillene, F, Frere, J.M, Charlier, P.
Deposit date:2001-10-08
Release date:2001-10-31
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:STRUCTURE OF CLASS D BETA-LACTAMASE OXA-2
To be Published
6AUM
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BU of 6aum by Molmil
Crystal structure of human soluble epoxide hydrolase complexed with trans-4-[4-(3-trifluoromethoxyphenyl-l-ureido)-cyclohexyloxy]-benzoic acid.
Descriptor: 4-{[trans-4-({[4-(trifluoromethoxy)phenyl]carbamoyl}amino)cyclohexyl]oxy}benzoic acid, Bifunctional epoxide hydrolase 2, CHLORIDE ION, ...
Authors:Kodani, S.D, Bahkta, S, Hwang, S.H, Pakhomova, S, Newcomer, M.E, Morisseau, C, Hammock, B.
Deposit date:2017-09-01
Release date:2018-02-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Identification and optimization of soluble epoxide hydrolase inhibitors with dual potency towards fatty acid amide hydrolase.
Bioorg. Med. Chem. Lett., 28, 2018
7L8I
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BU of 7l8i by Molmil
SARS-CoV-2 Main Protease (Mpro) in Complex with Rupintrivir (P21)
Descriptor: 3C-like proteinase, 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
Authors:Lockbaum, G.J, Henes, M, Lee, J.M, Timm, J, Nalivaika, E.A, Yilmaz, N.K, Thompson, P.R, Schiffer, C.A.
Deposit date:2020-12-31
Release date:2021-09-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Pan-3C Protease Inhibitor Rupintrivir Binds SARS-CoV-2 Main Protease in a Unique Binding Mode.
Biochemistry, 60, 2021
3EP6
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BU of 3ep6 by Molmil
Human AdoMetDC D174N mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound
Descriptor: PYRUVIC ACID, S-ADENOSYLMETHIONINE METHYL ESTER, S-adenosylmethionine decarboxylase alpha chain, ...
Authors:Bale, S, Lopez, M.M, Makhatadze, G.I, Fang, Q, Pegg, A.E, Ealick, S.E.
Deposit date:2008-09-29
Release date:2008-12-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase.
Biochemistry, 47, 2008
7LB5
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BU of 7lb5 by Molmil
Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 (Arabidopsis thaliana)
Descriptor: Pyridoxal 5'-phosphate synthase-like subunit PDX1.2
Authors:Novikova, I.V, Evans, J.E.
Deposit date:2021-01-07
Release date:2021-09-22
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Tunable Heteroassembly of a Plant Pseudoenzyme-Enzyme Complex.
Acs Chem.Biol., 16, 2021

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