PDB: 6485 resultsInfo pagesStatus searchChemie searchBIRD

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3GMP	Structure of mouse CD1d in complex with PBS-25 Descriptor: (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Schiefner, A, Wilson, I.A. Deposit date: 2009-03-14 Release date: 2009-11-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands. J.Mol.Biol., 394, 2009
3GMN	Structure of mouse CD1d in complex with C10Ph Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2 microglobulin, ... Authors: Schiefner, A, Wilson, I.A. Deposit date: 2009-03-14 Release date: 2009-11-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands. J.Mol.Biol., 394, 2009
2FIK	Structure of a microbial glycosphingolipid bound to mouse CD1d Descriptor: (2S,3R)-3-HYDROXY-2-(TETRADECANOYLAMINO)OCTADECYL ALPHA-D-GALACTOPYRANOSIDURONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Wu, D, Zajonc, D.M. Deposit date: 2005-12-29 Release date: 2006-03-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Design of natural killer T cell activators: structure and function of a microbial glycosphingolipid bound to mouse CD1d. Proc.Natl.Acad.Sci.Usa, 103, 2006
3HE6	Crystal structure of mouse CD1d-alpha-galactosylceramide with mouse Valpha14-Vbeta8.2 NKT TCR Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ... Authors: Patel, O, Rossjohn, J. Deposit date: 2009-05-07 Release date: 2009-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Differential recognition of CD1d-alpha-galactosyl ceramide by the V beta 8.2 and V beta 7 semi-invariant NKT T cell receptors Immunity, 31, 2009
3HE7	Crystal structure of mouse CD1d-alpha-galactosylceramide with mouse Valpha14-Vbeta7 NKT TCR Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ... Authors: Patel, O, Rossjohn, J. Deposit date: 2009-05-08 Release date: 2009-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Differential recognition of CD1d-alpha-galactosyl ceramide by the V beta 8.2 and V beta 7 semi-invariant NKT T cell receptors Immunity, 31, 2009
2FWO	MHC Class I H-2Kd heavy chain in complex with beta-2microglobulin and peptide derived from influenza nucleoprotein Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-D alpha chain, ... Authors: Mitaksov, V, Fremont, D.H. Deposit date: 2006-02-02 Release date: 2006-02-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural Definition of the H-2Kd Peptide-binding Motif. J.Biol.Chem., 281, 2006
2FO4	Enhanced MHC class I binding and immune responses through anchor modification of the non-canonical tumor associated MUC1-8 peptide Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 8-mer from Mucin-1, ... Authors: Lazoura, E, Ramsland, P.A. Deposit date: 2006-01-12 Release date: 2006-11-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Enhanced major histocompatibility complex class I binding and immune responses through anchor modification of the non-canonical tumour-associated mucin 1-8 peptide Immunology, 119, 2006
1XVY	Crystal Structure of iron-free Serratia marcescens SfuA Descriptor: CITRIC ACID, sfuA Authors: Shouldice, S.R, McRee, D.E, Dougan, D.R, Tari, L.W, Schryvers, A.B. Deposit date: 2004-10-28 Release date: 2004-12-14 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Novel Anion-independent Iron Coordination by Members of a Third Class of Bacterial Periplasmic Ferric Ion-binding Proteins J.Biol.Chem., 280, 2005
1YS5	Solution structure of the antigenic domain of GNA1870 of Neisseria meningitidis Descriptor: lipoprotein Authors: Cantini, F, Savino, S, Masignani, V, Pizza, M, Scarselli, M, Swennen, E, Romagnoli, G, Veggi, D, Banci, L, Rappuoli, R. Deposit date: 2005-02-07 Release date: 2006-02-07 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the immunodominant domain of protective antigen GNA1870 of Neisseria meningitidis J.Biol.Chem., 281, 2006
6O0E	Saxiphilin:STX complex, soaking Descriptor: Saxiphilin, [(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate Authors: Yen, T.J, Lolicato, M, Minor, D.L. Deposit date: 2019-02-16 Release date: 2019-07-10 Last modified: 2019-12-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins. Sci Adv, 5, 2019
1XVX	Crystal Structure of iron-loaded Yersinia enterocolitica YfuA Descriptor: 1,2-ETHANEDIOL, CARBONATE ION, FE (III) ION, ... Authors: Shouldice, S.R, McRee, D.E, Dougan, D.R, Tari, L.W, Schryvers, A.B. Deposit date: 2004-10-28 Release date: 2004-12-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Novel Anion-independent Iron Coordination by Members of a Third Class of Bacterial Periplasmic Ferric Ion-binding Proteins J.Biol.Chem., 280, 2005
1HFS	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THE N-CARBOXY-ALKYL INHIBITOR L-764,004 Descriptor: 6-(4'-FLUORO-BIPHENYL-4-YL)-4-(3-METHYL-1-PHENYLCARBAMOYL-BUTYLCARBAMOYL)-2-[4-(1-OXO-1,3-DIHYDRO-ISOINDOL-2-YL)-BUTYL]-HEXANOIC ACID, CALCIUM ION, STROMELYSIN-1, ... Authors: Becker, J.W. Deposit date: 1997-02-13 Release date: 1998-02-18 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Inhibition of stromelysin-1 (MMP-3) by P1'-biphenylylethyl carboxyalkyl dipeptides. J.Med.Chem., 40, 1997
6O0D	Saxiphilin Apo structure Descriptor: Saxiphilin Authors: Yen, T.J, Lolicato, M, Minor, D.L. Deposit date: 2019-02-16 Release date: 2019-07-10 Last modified: 2019-12-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins. Sci Adv, 5, 2019
6O0F	Saxiphilin:STX complex, co-crystal Descriptor: Saxiphilin, [(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate Authors: Yen, T.J, Lolicato, M, Minor, D.L. Deposit date: 2019-02-16 Release date: 2019-07-10 Last modified: 2019-12-04 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins. Sci Adv, 5, 2019
5WJ5	Human TRPML1 channel structure in closed conformation Descriptor: Mucolipin-1 Authors: Schmiege, P, Li, X. Deposit date: 2017-07-21 Release date: 2017-10-18 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Human TRPML1 channel structures in open and closed conformations. Nature, 550, 2017
5EN2	Molecular basis for antibody-mediated neutralization of New World hemorrhagic fever mammarenaviruses Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... Authors: Mahmutovic, S, Clark, L, Levis, S, Briggiler, A, Enria, D, Harrison, S.C, Abraham, J. Deposit date: 2015-11-09 Release date: 2015-12-30 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.821 Å) Cite: Molecular Basis for Antibody-Mediated Neutralization of New World Hemorrhagic Fever Mammarenaviruses. Cell Host Microbe, 18, 2015
5TCX	Crystal structure of human tetraspanin CD81 Descriptor: CD81 antigen, CHOLESTEROL Authors: Zimmerman, B, McMillan, B.J, Seegar, T.C.M, Kruse, A.C, Blacklow, S.C. Deposit date: 2016-09-16 Release date: 2016-11-09 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.955 Å) Cite: Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket. Cell, 167, 2016
5W1M	MACV GP1 CR1-07 Fab complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CR1-07 Fab heavy chain, ... Authors: Raymond, D.D, Clark, L.E, Abraham, J. Deposit date: 2017-06-03 Release date: 2018-05-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.91 Å) Cite: Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. Nat Commun, 9, 2018
5W1G	CR1-07 unliganded Fab Descriptor: CR1-07 Fab heavy chain, CR1-07 Fab light chain Authors: Raymond, D.D, Clark, L.E, Abraham, J. Deposit date: 2017-06-03 Release date: 2018-05-30 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. Nat Commun, 9, 2018
7KQ8	Structure of iron bound MEMO1 Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FE (II) ION, ... Authors: Boniecki, M.T, Uhlemann, E.E, Dmitriev, O.Y. Deposit date: 2020-11-13 Release date: 2021-11-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.15 Å) Cite: MEMO1 binds iron and modulates iron homeostasis in cancer cells. Elife, 13, 2024
7L5C	Structure of copper bound MEMO1 Descriptor: 1,2-ETHANEDIOL, COPPER (I) ION, GLYCEROL, ... Authors: Boniecki, M.T, Uhlemann, E.E, Dmitriev, O.Y. Deposit date: 2020-12-21 Release date: 2022-01-19 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.55 Å) Cite: MEMO1 binds iron and modulates iron homeostasis in cancer cells. Elife, 13, 2024
1OIW	X-ray structure of the small G protein Rab11a in complex with GTPgammaS Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, MAGNESIUM ION, RAS-RELATED PROTEIN RAB-11A Authors: Pasqualato, S, Senic-Matuglia, F, Renault, L, Goud, B, Salamero, J, Cherfils, J. Deposit date: 2003-06-26 Release date: 2004-01-08 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The Structural Gdp/GTP Cycle of Rab11 Reveals a Novel Interface Involved in the Dynamics of Recycling Endosomes J.Biol.Chem., 279, 2004
1Q35	Crystal Structure of Pasteurella haemolytica Apo Ferric ion-Binding Protein A Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, iron binding protein FbpA Authors: Shouldice, S.R, Dougan, D.R, Skene, R.J, Snell, G, Scheibe, D, Williams, P.A, Kirby, S, McRee, D.E, Schryvers, A.B, Tari, L.W. Deposit date: 2003-07-28 Release date: 2003-11-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Crystal structure of Pasteurella haemolytica ferric ion-binding protein A reveals a novel class of bacterial iron-binding proteins J.Biol.Chem., 278, 2003
1P5Y	The structures of host range controlling regions of the capsids of canine and feline parvoviruses and mutants Descriptor: Coat protein VP2 Authors: Agbandje-McKenna, M, Govindasamy, L. Deposit date: 2003-04-28 Release date: 2003-08-26 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants. J.Virol., 77, 2003
1P5W	The structures of host range controlling regions of the capsids of canine and feline parvoviruses and mutants Descriptor: 5'-D(P*(3DR)P*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3', Coat protein VP2, MAGNESIUM ION Authors: Agbandje-McKenna, M, Govindasamy, L. Deposit date: 2003-04-28 Release date: 2003-08-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants. J.Virol., 77, 2003

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