PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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2LQZ	Structure of the RNA claw of the DNA packaging motor of bacteriophage 29 Descriptor: RNA (27-MER) Authors: Harjes, E.J, Matsuo, H.J, Kitamura, A.J. Deposit date: 2012-03-19 Release date: 2012-08-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of the RNA claw of the DNA packaging motor of bacteriophage 29. Nucleic Acids Res., 40, 2012
8PFK	RNA structure with 1-methylpseudoridine, C2 space group Descriptor: MAGNESIUM ION, RNA (12-mer) Authors: Spingler, B, McAuley, K, Nievergelt, P, Thorn, A. Deposit date: 2023-06-16 Release date: 2024-01-31 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.321 Å) Cite: RNA oligomers at atomic resolution containing 1-methylpseudouridine, an essential building block of mRNA vaccines. Chemmedchem, 19, 2024
1H1K	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA Descriptor: RNA Authors: Diprose, J.M, Grimes, J.M, Sutton, G.C, Burroughs, J.N, Meyer, A, Maan, S, Mertens, P.P.C, Stuart, D.I. Deposit date: 2002-07-17 Release date: 2002-09-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (10 Å) Cite: The Core of Bluetongue Virus Binds Double-Stranded RNA J.Virol., 76, 2002
2OHE	Structural and mutational analysis of tRNA-Intron splicing endonuclease from Thermoplasma acidophilum DSM 1728 Descriptor: tRNA-splicing endonuclease Authors: Kim, Y.K, Mizutani, K, Rhee, K.H, Lee, W.H, Park, S.Y, Hwang, K.Y. Deposit date: 2007-01-10 Release date: 2007-11-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA Intron-Splicing Endonucleases J.Bacteriol., 189, 2007
2OHC	structural and mutational analysis of tRNA-intron splicing endonuclease from Thermoplasma acidophilum DSM1728 Descriptor: tRNA-splicing endonuclease Authors: Kim, Y.K, Mizutani, K, Rhee, K.H, Lee, W.H, Park, S.Y, Hwang, K.Y. Deposit date: 2007-01-10 Release date: 2007-11-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA Intron-Splicing Endonucleases J.Bacteriol., 189, 2007
1ESY	NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIPLE PLATFORM Descriptor: RNA (5'-R(P*GP*GP*CP*GP*AP*CP*UP*GP*GP*UP*GP*AP*GP*UP*AP*CP*GP*CP*C)-3') Authors: Amarasinghe, G.K, De Guzman, R.N, Turner, R.B, Summers, M.F. Deposit date: 2000-04-11 Release date: 2000-05-31 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform. J.Mol.Biol., 299, 2000
2KP3	Structure of ANA-RNA hybrid duplex Descriptor: RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') Authors: Gonzalez, C, Martn-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. Nucleic Acids Res., 38, 2010
8H99	Crystal structure of E. coli ThrS catalytic domain mutant Descriptor: ADENOSINE-5'-TRIPHOSPHATE, IMIDAZOLE, MAGNESIUM ION, ... Authors: Qiao, H, Xia, M, Wang, J, Fang, P. Deposit date: 2022-10-25 Release date: 2023-02-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Tyrosine-targeted covalent inhibition of a tRNA synthetase aided by zinc ion. Commun Biol, 6, 2023
8H9C	Crystal structure of chemically modified E. coli ThrS catalytic domain 4 Descriptor: N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine, Threonine--tRNA ligase, ZINC ION Authors: Qiao, H, Xia, M, Wang, J, Fang, P. Deposit date: 2022-10-25 Release date: 2023-02-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Tyrosine-targeted covalent inhibition of a tRNA synthetase aided by zinc ion. Commun Biol, 6, 2023
8H98	Crystal structure of chemically modified E. coli ThrS catalytic domain 1 Descriptor: N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine, Threonine--tRNA ligase, ZINC ION Authors: Qiao, H, Xia, M, Wang, J, Fang, P. Deposit date: 2022-10-25 Release date: 2023-02-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Tyrosine-targeted covalent inhibition of a tRNA synthetase aided by zinc ion. Commun Biol, 6, 2023
8H9B	Crystal structure of chemically modified E. coli ThrS catalytic domain 3 Descriptor: N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine, Threonine--tRNA ligase, ZINC ION Authors: Qiao, H, Xia, M, Wang, J, Fang, P. Deposit date: 2022-10-25 Release date: 2023-02-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Tyrosine-targeted covalent inhibition of a tRNA synthetase aided by zinc ion. Commun Biol, 6, 2023
8H9A	Crystal structure of chemically modified E. coli ThrS catalytic domain 2 Descriptor: N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine, Threonine--tRNA ligase, ZINC ION Authors: Qiao, H, Xia, M, Wang, J, Fang, P. Deposit date: 2022-10-25 Release date: 2023-02-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Tyrosine-targeted covalent inhibition of a tRNA synthetase aided by zinc ion. Commun Biol, 6, 2023
8TVZ	RNA origami 3-helix tile Traptamer Descriptor: RNA (363-MER) Authors: McRae, E.K.S, Vallina, N.S, Andersen, E.S. Deposit date: 2023-08-18 Release date: 2024-04-03 Method: ELECTRON MICROSCOPY (5.94 Å) Cite: An RNA origami robot that traps and releases a fluorescent aptamer. Sci Adv, 10, 2024
472D	STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS Descriptor: RNA (5'-R(*GP*UP*AP*GP*GP*CP*AP*C)-3'), RNA (5'-R(*GP*UP*GP*UP*UP*UP*AP*C)-3') Authors: Deng, J, Sundaralingam, M. Deposit date: 1999-05-14 Release date: 2000-11-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Synthesis and crystal structure of an octamer RNA r(guguuuac)/r(guaggcac) with G.G/U.U tandem wobble base pairs: comparison with other tandem G.U pairs. Nucleic Acids Res., 28, 2000
7R6O	Pyrrolysyl-tRNA synthetase from methanogenic archaeon ISO4-G1 (G1PylRS) Descriptor: 1,2-ETHANEDIOL, Pyrrolysyl-tRNA synthetase PylS, SULFATE ION Authors: Frkic, R.L, Huber, T, Jackson, C.J. Deposit date: 2021-06-23 Release date: 2022-03-02 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Genetic Encoding of Cyanopyridylalanine for In-Cell Protein Macrocyclization by the Nitrile-Aminothiol Click Reaction. Angew.Chem.Int.Ed.Engl., 61, 2022
3WKR	Crystal structure of the SepCysS-SepCysE complex from Methanocaldococcus jannaschii Descriptor: O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481 Authors: Nakazawa, Y, Asano, N, Nakamura, A, Yao, M. Deposit date: 2013-10-30 Release date: 2014-07-16 Last modified: 2022-08-24 Method: X-RAY DIFFRACTION (2.803 Å) Cite: Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea. Proc.Natl.Acad.Sci.USA, 111, 2014
3WKS	Crystal structure of the SepCysS-SepCysE N-terminal domain complex from Descriptor: O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481 Authors: Nakazawa, Y, Asano, N, Nakamura, A, Yao, M. Deposit date: 2013-10-30 Release date: 2014-07-30 Last modified: 2022-08-24 Method: X-RAY DIFFRACTION (3.029 Å) Cite: Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea. Proc.Natl.Acad.Sci.USA, 111, 2014
2N3Q	NMR structure of the II-III-VI three-way junction from the VS ribozyme Descriptor: RNA (62-MER) Authors: Bonneau, E, Girard, N, Lemieux, S, Legault, P. Deposit date: 2015-06-09 Release date: 2015-07-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. Rna, 21, 2015
5XAQ	Crystal structure of Animalia-specific tRNA deacylase from Mus musculus Descriptor: Probable D-tyrosyl-tRNA(Tyr) deacylase 2 Authors: Kuncha, K.S, Kattula, B, Sankarnarayanan, R. Deposit date: 2017-03-14 Release date: 2018-02-14 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.86 Å) Cite: A chiral selectivity relaxed paralog of DTD for proofreading tRNA mischarging in Animalia Nat Commun, 9, 2018
2LVY	Solution Structure of a RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification Descriptor: RNA (5'-R(*CP*GP*CP*(UPV)P*AP*CP*GP*CP*T)-3'), RNA (5'-R(*GP*CP*GP*UP*AP*GP*CP*GP*T)-3') Authors: Baraguey, C. Deposit date: 2012-07-13 Release date: 2013-04-10 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The biolabile 2'-O-pivaloyloxymethyl modification in an RNA helix: an NMR solution structure. Org.Biomol.Chem., 11, 2013
2N7X	Solution structure of microRNA 20b pre-element Descriptor: RNA (5'-R(*GP*GP*UP*AP*GP*UP*UP*UP*UP*GP*GP*CP*AP*UP*GP*AP*CP*UP*CP*UP*AP*CP*C)-3') Authors: Yang, F, Chen, Y, Varani, G. Deposit date: 2015-09-25 Release date: 2016-04-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer. Nucleic Acids Res., 44, 2016
1NTG	Crystal Structure of the EMAP II-like Cytokine Released from human tyrosyl-tRNA Synthetase Descriptor: Tyrosyl-tRNA synthetase Authors: Yang, X.-L, Skene, R.J, Mcree, D.E, Schimmel, P. Deposit date: 2003-01-29 Release date: 2003-05-13 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal Structure of an EMAP-II-like Cytokine Released from a human tRNA Synthetase Helv.Chim.Acta, 86, 2003
1Q7S	Crystal structure of bit1 Descriptor: bit1 Authors: De Pereda, J.M, Waas, W.F, Jan, Y, Ruoslahti, E, Schimmel, P, Pascual, J. Deposit date: 2003-08-19 Release date: 2003-12-16 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of a human peptidyl-tRNA hydrolase reveals a new fold and suggests basis for a bifunctional activity. J.Biol.Chem., 279, 2004
3MF2	Crystal structure of class II aaRS homologue (Bll0957) complexed with AMP Descriptor: ADENOSINE MONOPHOSPHATE, Bll0957 protein, GLYCEROL, ... Authors: Weygand-Durasevic, I, Mocibob, M, Ivic, N, Bilokapic, S, Maier, T, Luic, M, Ban, N. Deposit date: 2010-04-01 Release date: 2010-07-28 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis Proc.Natl.Acad.Sci.USA, 107, 2010
3MEY	Crystal structure of class II aaRS homologue (Bll0957) complexed with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bll0957 protein, MAGNESIUM ION, ... Authors: Weygand-Durasevic, I, Mocibob, M, Ivic, N, Bilokapic, S, Maier, T, Luic, M, Ban, N. Deposit date: 2010-04-01 Release date: 2010-07-28 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis Proc.Natl.Acad.Sci.USA, 107, 2010

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