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PDB: 549 results

2MOR
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BU of 2mor by Molmil
A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings
Descriptor: Ubiquitin
Authors:Camilloni, C, Vendruscolo, M.
Deposit date:2014-04-29
Release date:2014-06-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings.
J.Phys.Chem.B, 119, 2015
1C3T
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BU of 1c3t by Molmil
ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURAL SPECIFICITY
Descriptor: PROTEIN (1D8 UBIQUITIN)
Authors:Lazar, G.A, Johnson, E.C, Desjarlais, J.R, Handel, T.M.
Deposit date:1999-07-28
Release date:1999-08-20
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Rotamer strain as a determinant of protein structural specificity.
Protein Sci., 8, 1999
1Q5W
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BU of 1q5w by Molmil
Ubiquitin Recognition by Npl4 Zinc-Fingers
Descriptor: Ubiquitin, ZINC ION, homolog of yeast nuclear protein localization 4
Authors:Alam, S.L, Sun, J, Payne, M, Welch, B.D, Blake, B.K, Davis, D.R, Meyer, H.H, Emr, S.D, Sundquist, W.I.
Deposit date:2003-08-11
Release date:2004-03-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Ubiquitin interactions of NZF zinc fingers.
Embo J., 23, 2004
5YMY
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BU of 5ymy by Molmil
The structure of the complex between Rpn13 and K48-diUb
Descriptor: Proteasomal ubiquitin receptor ADRM1, Ubiquitin
Authors:Liu, Z, Dong, X, Gong, Z, Yi, H.W, Liu, K, Yang, J, Zhang, W.P, Tang, C.
Deposit date:2017-10-22
Release date:2019-03-13
Last modified:2019-04-24
Method:SOLUTION NMR
Cite:Structural basis for the recognition of K48-linked Ub chain by proteasomal receptor Rpn13.
Cell Discov, 5, 2019
2K25
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BU of 2k25 by Molmil
Automated NMR Structure of the UBB by FAPSY
Descriptor: UBB
Authors:Lee, W, Jung, J, Lee, W.
Deposit date:2008-03-24
Release date:2008-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Automated Suite for Protein Structure by NMR Spectroscopy
To be Published
2RU6
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BU of 2ru6 by Molmil
The pure alternative state of ubiquitin
Descriptor: Ubiquitin
Authors:Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R.
Deposit date:2013-12-04
Release date:2014-02-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme
Biochemistry, 53, 2014
2RSU
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BU of 2rsu by Molmil
Alternative structure of Ubiquitin
Descriptor: Ubiquitin
Authors:Kitazawa, S, Kameda, T, Yagi-Utsumi, M, Kato, K, Kitahara, R.
Deposit date:2012-06-15
Release date:2013-03-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin
Biochemistry, 52, 2013
6UD0
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BU of 6ud0 by Molmil
Solution-state NMR structural ensemble of human Tsg101 UEV in complex with K63-linked diubiquitin
Descriptor: Tumor susceptibility gene 101 protein, Ubiquitin
Authors:Strickland, M, Watanabe, S, Bonn, S.M, Camara, C.M, Fushman, D, Carter, C.A, Tjandra, N.
Deposit date:2019-09-18
Release date:2021-03-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Tsg101/ESCRT-I Recruitment Regulated by the Dual Binding Modes of K63-Linked Diubiquitin
Structure, 2021
1FXT
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BU of 1fxt by Molmil
STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTER COMPLEX
Descriptor: UBIQUITIN, UBIQUITIN-CONJUGATING ENZYME E2-24 KDA
Authors:Hamilton, K.S, Shaw, G.S, Williams, R.S, Huzil, J.T, McKenna, S, Ptak, C, Glover, M, Ellison, M.J.
Deposit date:2000-09-26
Release date:2001-10-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of a conjugating enzyme-ubiquitin thiolester intermediate reveals a novel role for the ubiquitin tail.
Structure, 9, 2001
5UJL
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BU of 5ujl by Molmil
Representative 1-conformer ensembles of K27-linked Ub2 from RDC data
Descriptor: Ubiquitin
Authors:Castaneda, C.A, Fushman, D.
Deposit date:2017-01-18
Release date:2017-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.
Structure, 24, 2016
5UJN
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BU of 5ujn by Molmil
Representative 2-conformer ensembles of K27-linked Ub2 from RDC data
Descriptor: Ubiquitin
Authors:Castaneda, C.A, Fushman, D.
Deposit date:2017-01-18
Release date:2018-08-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.
Structure, 24, 2016
2MWS
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BU of 2mws by Molmil
Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1
Descriptor: DNA damage-inducible protein 1, Ubiquitin
Authors:Fushman, D, Nowicka, U, Walker, O.
Deposit date:2014-11-23
Release date:2015-03-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
2MRO
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BU of 2mro by Molmil
Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)
Descriptor: DNA damage-inducible protein 1, Polyubiquitin-B
Authors:Zhang, D, Fushman, D.
Deposit date:2014-07-14
Release date:2015-02-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
5VEY
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BU of 5vey by Molmil
Solution NMR structure of histone H2A-H2B mono-ubiquitylated at H2A Lys15 in complex with RNF169 (653-708)
Descriptor: E3 ubiquitin-protein ligase RNF169, Histone H2B type 1-J,Histone H2A type 1-B/E, Polyubiquitin-B
Authors:Hu, Q, Botuyan, M.V, Cui, G, Mer, G.
Deposit date:2017-04-06
Release date:2017-05-17
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18.
Mol. Cell, 66, 2017
6QF8
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BU of 6qf8 by Molmil
Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method
Descriptor: Polyubiquitin-B
Authors:ElGamacy, M, Truffault, V, Zhu, H, Coles, M.
Deposit date:2019-01-09
Release date:2019-04-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mapping Local Conformational Landscapes of Proteins in Solution.
Structure, 27, 2019
2L3Z
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BU of 2l3z by Molmil
Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin
Descriptor: Ubiquitin
Authors:Huber, M, Hiller, S, Schanda, P, Ernst, M, Bockmann, A, Verel, R, Meier, B.H.
Deposit date:2010-09-27
Release date:2011-02-16
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination.
Chemphyschem, 12, 2011
2LD9
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BU of 2ld9 by Molmil
Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs
Descriptor: Ubiquitin
Authors:Kumar, D, Hosur, R.
Deposit date:2011-05-18
Release date:2011-06-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:AUTOBA: Automation of Backbone Assignment from HN(C)N Suite of Experiments
To be Published
7F7X
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BU of 7f7x by Molmil
Protein complex between phosphorylated ubiquitin and Ubqln2 UBA
Descriptor: Polyubiquitin-B, Ubiquilin-2
Authors:Qin, L.Y, Dong, X, Tang, C.
Deposit date:2021-06-30
Release date:2022-05-18
Method:SOLUTION NMR
Cite:Kinetic Constraints in the Specific Interaction between Phosphorylated Ubiquitin and Proteasomal Shuttle Factors.
Biomolecules, 11, 2021
2BGF
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BU of 2bgf by Molmil
NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data
Descriptor: DI-UBIQUITIN
Authors:Van Dijk, A.D.J, Fushman, D, Bonvin, A.M.J.J.
Deposit date:2004-12-22
Release date:2005-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Various Strategies of Using Residual Dipolar Couplings in NMR-Driven Protein Docking: Application to Lys48-Linked Di-Ubiquitin and Validation Against 15N-Relaxation Data
Proteins: Struct., Funct., Bioinf., 60, 2005
2JZZ
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BU of 2jzz by Molmil
Solid-State NMR Structure of Microcrystalline Ubiquitin
Descriptor: Ubiquitin
Authors:Manolikas, T, Herrmann, T, Meier, B.H.
Deposit date:2008-01-22
Release date:2008-03-25
Last modified:2024-05-08
Method:SOLID-STATE NMR
Cite:Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy.
J.Am.Chem.Soc., 130, 2008
1GJZ
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BU of 1gjz by Molmil
Solution structure of a dimeric N-terminal fragment of human ubiquitin
Descriptor: UBIQUITIN
Authors:Bolton, D, Evans, P.A, Stott, K, Broadhurst, R.W.
Deposit date:2001-08-06
Release date:2001-12-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Properties of a Dimeric N-Terminal Fragment of Human Ubiquitin.
J.Mol.Biol., 314, 2001
6KOW
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BU of 6kow by Molmil
Retracted state of S65/T66 double-phosphorylated ubiquitin
Descriptor: Polyubiquitin-B
Authors:Dong, X, Tang, C.
Deposit date:2019-08-13
Release date:2019-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
6N13
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BU of 6n13 by Molmil
UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin
Descriptor: E3 ubiquitin-protein ligase parkin, Ubiquitin-conjugating enzyme E2 L3, ZINC ION, ...
Authors:Condos, T.E.C, Dunkerley, K.M, Freeman, E.A, Barber, K.R, Aguirre, J.D, Chaugule, V.K, Xiao, Y, Konermann, L, Walden, H, Shaw, G.S.
Deposit date:2018-11-08
Release date:2018-11-28
Last modified:2020-01-08
Method:SOLUTION NMR
Cite:Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation.
EMBO J., 37, 2018
2LZ6
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BU of 2lz6 by Molmil
Distinct ubiquitin binding modes exhibited by sh3 domains: molecular determinants and functional implications
Descriptor: CD2-associated protein, Ubiquitin
Authors:Ortega-Roldan, J, Azuaga, A, Blackledge, M, Van Nuland, N.
Deposit date:2012-09-24
Release date:2013-10-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Distinct Ubiquitin Binding Modes Exhibited by SH3 Domains: Molecular Determinants and Functional Implications.
Plos One, 8, 2013
2MI8
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BU of 2mi8 by Molmil
Solution structure of lysine-free (K0) ubiquitin
Descriptor: Ubiquitin
Authors:Huang, T, Li, J.R, Byrd, A.R.
Deposit date:2013-12-09
Release date:2014-04-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of lysine-free (K0) ubiquitin.
Protein Sci., 23, 2014

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